RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 RAB3GAP2Q9H2M9 1393 aa14.15□□□□□ -0.14
CD44-206ENST00000415148 SETD5Q9C0A6 1442 aa14.15□□□□□ -0.14
CD44-206ENST00000415148 CFAP43Q8NDM7 1665 aa14.14□□□□□ -0.15
CD44-206ENST00000415148 ITGAEP38570 1179 aa14.13□□□□□ -0.15
CD44-206ENST00000415148 MAPKBP1O60336 1514 aa14.13□□□□□ -0.15
CD44-206ENST00000415148 TIMELESSQ9UNS1 1208 aa14.11□□□□□ -0.15
CD44-206ENST00000415148 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.1□□□□□ -0.15
CD44-206ENST00000415148 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
CD44-206ENST00000415148 AQRO60306 1485 aaKnown RBP eCLIP14.09□□□□□ -0.15
CD44-206ENST00000415148 TSHZ2Q9NRE2 1034 aa14.09□□□□□ -0.15
CD44-206ENST00000415148 DNMBPQ6XZF7 1577 aa14.09□□□□□ -0.15
CD44-206ENST00000415148 ABCA10Q8WWZ4 1543 aa14.08□□□□□ -0.15
CD44-206ENST00000415148 FANCD2Q9BXW9 1451 aa14.08□□□□□ -0.15
CD44-206ENST00000415148 PHLDB1Q86UU1 1377 aa14.08□□□□□ -0.16
CD44-206ENST00000415148 DNAJC5BQ9UF47 199 aa14.08□□□□□ -0.16
CD44-206ENST00000415148 FYCO1Q9BQS8 1478 aa14.07□□□□□ -0.16
CD44-206ENST00000415148 PCF11O94913 1555 aaKnown RBP14.07□□□□□ -0.16
CD44-206ENST00000415148 CUL7Q14999 1698 aa14.07□□□□□ -0.16
CD44-206ENST00000415148 CASKIN1Q8WXD9 1431 aa14.05□□□□□ -0.16
CD44-206ENST00000415148 CTTNBP2Q8WZ74 1663 aa14.02□□□□□ -0.16
CD44-206ENST00000415148 TOPBP1Q92547 1522 aa14.02□□□□□ -0.17
CD44-206ENST00000415148 BCANQ96GW7 911 aa14.02□□□□□ -0.17
CD44-206ENST00000415148 POLA1P09884 1462 aaPredicted RBP14.01□□□□□ -0.17
CD44-206ENST00000415148 FAM50AQ14320 339 aaKnown RBP14□□□□□ -0.17
CD44-206ENST00000415148 FMN1Q68DA7 1419 aa13.99□□□□□ -0.17
CD44-206ENST00000415148 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
CD44-206ENST00000415148 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
CD44-206ENST00000415148 SIN3AQ96ST3 1273 aa13.98□□□□□ -0.17
CD44-206ENST00000415148 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
CD44-206ENST00000415148 HIRIP3Q9BW71 556 aaPredicted RBP13.96□□□□□ -0.18
CD44-206ENST00000415148 DDX10Q13206 875 aaKnown RBP13.95□□□□□ -0.18
CD44-206ENST00000415148 P3H3Q8IVL6 736 aa13.95□□□□□ -0.18
CD44-206ENST00000415148 PPP1R15AO75807 674 aaPredicted RBP13.94□□□□□ -0.18
CD44-206ENST00000415148 FGD6Q6ZV73 1430 aa13.93□□□□□ -0.18
CD44-206ENST00000415148 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
CD44-206ENST00000415148 LAMC3Q9Y6N6 1575 aa13.93□□□□□ -0.18
CD44-206ENST00000415148 ATP1B4Q9UN42 357 aaPredicted RBP13.92□□□□□ -0.18
CD44-206ENST00000415148 SAMD9Q5K651 1589 aa13.92□□□□□ -0.18
CD44-206ENST00000415148 THOC2Q8NI27 1593 aaKnown RBP13.92□□□□□ -0.18
CD44-206ENST00000415148 FKBP8Q14318 412 aa13.91□□□□□ -0.18
CD44-206ENST00000415148 ABCA5Q8WWZ7 1642 aa13.89□□□□□ -0.19
CD44-206ENST00000415148 HFM1A2PYH4 1435 aa13.89□□□□□ -0.19
CD44-206ENST00000415148 CCER2I3L3R5 266 aa13.89□□□□□ -0.19
CD44-206ENST00000415148 UACAQ9BZF9 1416 aa13.88□□□□□ -0.19
CD44-206ENST00000415148 ANP32EQ9BTT0 268 aa13.88□□□□□ -0.19
CD44-206ENST00000415148 MTUS2Q5JR59 1369 aa13.87□□□□□ -0.19
CD44-206ENST00000415148 NESP48681 1621 aa13.87□□□□□ -0.19
CD44-206ENST00000415148 CCDC18Q5T9S5 1454 aa13.87□□□□□ -0.19
CD44-206ENST00000415148 URB2Q14146 1524 aaKnown RBP13.86□□□□□ -0.19
CD44-206ENST00000415148 GRIN2BQ13224 1484 aa13.86□□□□□ -0.19
CD44-206ENST00000415148 KIF21AQ7Z4S6 1674 aa13.86□□□□□ -0.19
CD44-206ENST00000415148 PTPN23Q9H3S7 1636 aa13.86□□□□□ -0.19
CD44-206ENST00000415148 SUPT6HQ7KZ85 1726 aaKnown RBP13.85□□□□□ -0.19
CD44-206ENST00000415148 MYOM3Q5VTT5 1437 aa13.85□□□□□ -0.19
CD44-206ENST00000415148 TRIM52Q96A61 297 aa13.85□□□□□ -0.19
CD44-206ENST00000415148 GAPVD1Q14C86 1478 aa13.84□□□□□ -0.19
CD44-206ENST00000415148 LRRIQ1Q96JM4 1722 aa13.84□□□□□ -0.19
CD44-206ENST00000415148 EHBP1L1Q8N3D4 1523 aa13.84□□□□□ -0.19
CD44-206ENST00000415148 TONSLQ96HA7 1378 aa13.83□□□□□ -0.19
CD44-206ENST00000415148 NCOA2Q15596 1464 aa13.83□□□□□ -0.2
CD44-206ENST00000415148 PTPRKQ15262 1439 aa13.82□□□□□ -0.2
CD44-206ENST00000415148 ANP32CO43423 234 aa13.82□□□□□ -0.2
CD44-206ENST00000415148 NAIPQ13075 1403 aa13.81□□□□□ -0.2
CD44-206ENST00000415148 ARHGEF11O15085 1522 aa13.81□□□□□ -0.2
CD44-206ENST00000415148 PDS5BQ9NTI5 1447 aa13.81□□□□□ -0.2
CD44-206ENST00000415148 UGGT2Q9NYU1 1516 aa13.8□□□□□ -0.2
CD44-206ENST00000415148 TDRD9Q8NDG6 1382 aaKnown RBP13.78□□□□□ -0.2
CD44-206ENST00000415148 TCOF1Q13428 1488 aaKnown RBP13.78□□□□□ -0.2
CD44-206ENST00000415148 AKNAQ7Z591 1439 aa13.76□□□□□ -0.21
CD44-206ENST00000415148 RBM19Q9Y4C8 960 aaKnown RBP13.76□□□□□ -0.21
CD44-206ENST00000415148 GCC2Q8IWJ2 1684 aa13.75□□□□□ -0.21
CD44-206ENST00000415148 TARBP1Q13395 1621 aaKnown RBP13.74□□□□□ -0.21
CD44-206ENST00000415148 HECW1Q76N89 1606 aa13.74□□□□□ -0.21
CD44-206ENST00000415148 KDM5BQ9UGL1 1544 aa13.73□□□□□ -0.21
CD44-206ENST00000415148 MIA2Q96PC5 1412 aa13.72□□□□□ -0.21
CD44-206ENST00000415148 MAGI3Q5TCQ9 1506 aa13.71□□□□□ -0.21
CD44-206ENST00000415148 NEFLP07196 543 aa13.71□□□□□ -0.22
CD44-206ENST00000415148 PBRM1Q86U86 1689 aa13.69□□□□□ -0.22
CD44-206ENST00000415148 IQGAP2Q13576 1575 aa13.69□□□□□ -0.22
CD44-206ENST00000415148 MSH5O43196 834 aa13.68□□□□□ -0.22
CD44-206ENST00000415148 IRX6P78412 446 aaPredicted RBP13.68□□□□□ -0.22
CD44-206ENST00000415148 EPRSP07814 1512 aaKnown RBP13.68□□□□□ -0.22
CD44-206ENST00000415148 BCL11AQ9H165 835 aa13.66□□□□□ -0.22
CD44-206ENST00000415148 DENND4BO75064 1496 aaPredicted RBP13.65□□□□□ -0.22
CD44-206ENST00000415148 ADAMTS12P58397 1594 aa13.65□□□□□ -0.22
CD44-206ENST00000415148 WDR62O43379 1518 aa13.64□□□□□ -0.23
CD44-206ENST00000415148 RRP7BPQ9NSQ0 103 aa13.63□□□□□ -0.23
CD44-206ENST00000415148 ROCK1Q13464 1354 aa13.63□□□□□ -0.23
CD44-206ENST00000415148 EIF4G2P78344 907 aaKnown RBP eCLIP13.61□□□□□ -0.23
CD44-206ENST00000415148 MPHOSPH9Q99550 1183 aa13.61□□□□□ -0.23
CD44-206ENST00000415148 HSPA5P11021 654 aaKnown RBP13.61□□□□□ -0.23
CD44-206ENST00000415148 KDM6BO15054 1643 aa13.6□□□□□ -0.23
CD44-206ENST00000415148 HNRNPUQ00839 825 aaKnown RBP eCLIP13.6□□□□□ -0.23
CD44-206ENST00000415148 CCDC184Q52MB2 194 aa13.6□□□□□ -0.23
CD44-206ENST00000415148 WASHC2AQ641Q2 1341 aa13.6□□□□□ -0.23
CD44-206ENST00000415148 CHIC2Q9UKJ5 165 aa13.59□□□□□ -0.23
CD44-206ENST00000415148 CDK13Q14004 1512 aaKnown RBP13.58□□□□□ -0.24
CD44-206ENST00000415148 DNMT1P26358 1616 aaKnown RBP13.57□□□□□ -0.24
CD44-206ENST00000415148 CNTLNQ9NXG0 1405 aa13.57□□□□□ -0.24
CD44-206ENST00000415148 MRC2Q9UBG0 1479 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms