RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
CD44-206ENST00000415148 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
CD44-206ENST00000415148 ZCCHC6Q5VYS8 1495 aaKnown RBP16.99■□□□□ 0.31
CD44-206ENST00000415148 SHROOM4Q9ULL8 1493 aa16.96■□□□□ 0.31
CD44-206ENST00000415148 SUPT5HO00267 1087 aaKnown RBP16.72■□□□□ 0.27
CD44-206ENST00000415148 DCAF1Q9Y4B6 1507 aa16.58■□□□□ 0.24
CD44-206ENST00000415148 MYO15BQ96JP2 1530 aa16.48■□□□□ 0.23
CD44-206ENST00000415148 CHIC1Q5VXU3 224 aa16.4■□□□□ 0.22
CD44-206ENST00000415148 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
CD44-206ENST00000415148 HRCP23327 699 aa16.31■□□□□ 0.2
CD44-206ENST00000415148 PCGF6Q9BYE7 350 aa16.19■□□□□ 0.18
CD44-206ENST00000415148 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
CD44-206ENST00000415148 ABCC9O60706 1549 aa16.05■□□□□ 0.16
CD44-206ENST00000415148 LOC105371045A0A1W2PR82 267 aa15.99■□□□□ 0.15
CD44-206ENST00000415148 RSF1Q96T23 1441 aaPredicted RBP15.88■□□□□ 0.13
CD44-206ENST00000415148 SCRIBQ14160 1630 aa15.85■□□□□ 0.13
CD44-206ENST00000415148 RB1CC1Q8TDY2 1594 aa15.78■□□□□ 0.12
CD44-206ENST00000415148 NACADO15069 1562 aa15.76■□□□□ 0.11
CD44-206ENST00000415148 TRIM26Q12899 539 aaPredicted RBP15.74■□□□□ 0.11
CD44-206ENST00000415148 TRIM41Q8WV44 630 aa15.65■□□□□ 0.1
CD44-206ENST00000415148 CECR2Q9BXF3 1484 aa15.54■□□□□ 0.08
CD44-206ENST00000415148 MROH2BQ7Z745 1585 aa15.54■□□□□ 0.08
CD44-206ENST00000415148 ZEB1P37275 1124 aaPredicted RBP15.53■□□□□ 0.08
CD44-206ENST00000415148 FAM9AQ8IZU1 332 aaPredicted RBP15.49■□□□□ 0.07
CD44-206ENST00000415148 EHMT2Q96KQ7 1210 aa15.47■□□□□ 0.07
CD44-206ENST00000415148 WIZO95785 1651 aa15.46■□□□□ 0.07
CD44-206ENST00000415148 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
CD44-206ENST00000415148 EIF4G1Q04637 1599 aaKnown RBP15.36■□□□□ 0.05
CD44-206ENST00000415148 SCAF1Q9H7N4 1312 aaKnown RBP15.33■□□□□ 0.04
CD44-206ENST00000415148 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
CD44-206ENST00000415148 SMARCA4P51532 1647 aa15.25■□□□□ 0.03
CD44-206ENST00000415148 CCDC88BA6NC98 1476 aa15.18■□□□□ 0.02
CD44-206ENST00000415148 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
CD44-206ENST00000415148 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
CD44-206ENST00000415148 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.14■□□□□ 0.01
CD44-206ENST00000415148 WRNQ14191 1432 aaPredicted RBP eCLIP15.14■□□□□ 0.01
CD44-206ENST00000415148 EEA1Q15075 1411 aa15.12■□□□□ 0.01
CD44-206ENST00000415148 ABCC8Q09428 1581 aa15.1■□□□□ 0.01
CD44-206ENST00000415148 TNIKQ9UKE5 1360 aa15.06■□□□□ 0
CD44-206ENST00000415148 PEG3Q9GZU2 1588 aa15.03■□□□□ -0
CD44-206ENST00000415148 TTBK1Q5TCY1 1321 aaPredicted RBP15.02■□□□□ -0
CD44-206ENST00000415148 NEUROD1Q13562 356 aa15.02■□□□□ -0
CD44-206ENST00000415148 PELP1Q8IZL8 1130 aaKnown RBP15.02■□□□□ -0
CD44-206ENST00000415148 CEP162Q5TB80 1403 aa15.02□□□□□ -0.01
CD44-206ENST00000415148 CCER1Q8TC90 406 aaPredicted RBP15.01□□□□□ -0.01
CD44-206ENST00000415148 SOGA1O94964 1423 aa15□□□□□ -0.01
CD44-206ENST00000415148 CSRNP3Q8WYN3 585 aa14.99□□□□□ -0.01
CD44-206ENST00000415148 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
CD44-206ENST00000415148 ACIN1Q9UKV3 1341 aaKnown RBP14.97□□□□□ -0.01
CD44-206ENST00000415148 GOLGA3Q08378 1498 aa14.93□□□□□ -0.02
CD44-206ENST00000415148 RUSC2Q8N2Y8 1516 aa14.9□□□□□ -0.02
CD44-206ENST00000415148 DIEXFQ68CQ4 756 aaKnown RBP14.89□□□□□ -0.03
CD44-206ENST00000415148 UBTFP17480 764 aaKnown RBP14.87□□□□□ -0.03
CD44-206ENST00000415148 KIF21BO75037 1637 aa14.86□□□□□ -0.03
CD44-206ENST00000415148 GTF3C3Q9Y5Q9 886 aa14.86□□□□□ -0.03
CD44-206ENST00000415148 CEP164Q9UPV0 1460 aa14.85□□□□□ -0.03
CD44-206ENST00000415148 ATAD2BQ9ULI0 1458 aa14.82□□□□□ -0.04
CD44-206ENST00000415148 PABPN1Q86U42 306 aaKnown RBP eCLIP14.82□□□□□ -0.04
CD44-206ENST00000415148 SYNJ1O43426 1573 aa14.81□□□□□ -0.04
CD44-206ENST00000415148 BAZ1BQ9UIG0 1483 aaKnown RBP14.79□□□□□ -0.04
CD44-206ENST00000415148 CLIP1P30622 1438 aa14.72□□□□□ -0.05
CD44-206ENST00000415148 VPS8Q8N3P4 1428 aa14.71□□□□□ -0.05
CD44-206ENST00000415148 CENPBP07199 599 aaPredicted RBP14.7□□□□□ -0.06
CD44-206ENST00000415148 TOP2BQ02880 1626 aa14.7□□□□□ -0.06
CD44-206ENST00000415148 ZNF316A6NFI3 1004 aaPredicted RBP14.67□□□□□ -0.06
CD44-206ENST00000415148 YTHDC1Q96MU7 727 aaKnown RBP14.67□□□□□ -0.06
CD44-206ENST00000415148 BIVM-ERCC5R4GMW8 1640 aa14.66□□□□□ -0.06
CD44-206ENST00000415148 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
CD44-206ENST00000415148 APLP2Q06481 763 aa14.62□□□□□ -0.07
CD44-206ENST00000415148 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
CD44-206ENST00000415148 HNRNPUL2Q1KMD3 747 aaKnown RBP14.61□□□□□ -0.07
CD44-206ENST00000415148 MIER1Q8N108 512 aa14.61□□□□□ -0.07
CD44-206ENST00000415148 HMGXB3Q12766 1538 aa14.58□□□□□ -0.07
CD44-206ENST00000415148 PRXQ9BXM0 1461 aa14.57□□□□□ -0.08
CD44-206ENST00000415148 NCAPD3P42695 1498 aa14.56□□□□□ -0.08
CD44-206ENST00000415148 CLSPNQ9HAW4 1339 aa14.54□□□□□ -0.08
CD44-206ENST00000415148 RANGAP1P46060 587 aaPredicted RBP14.48□□□□□ -0.09
CD44-206ENST00000415148 ARAP1Q96P48 1450 aa14.48□□□□□ -0.09
CD44-206ENST00000415148 KIF27Q86VH2 1401 aa14.47□□□□□ -0.09
CD44-206ENST00000415148 CUX1P39880 1505 aa14.47□□□□□ -0.09
CD44-206ENST00000415148 CFTRP13569 1480 aa14.45□□□□□ -0.1
CD44-206ENST00000415148 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
CD44-206ENST00000415148 PRDM2Q13029 1718 aa14.4□□□□□ -0.1
CD44-206ENST00000415148 DHX57Q6P158 1386 aaKnown RBP14.39□□□□□ -0.11
CD44-206ENST00000415148 CUX2O14529 1486 aa14.38□□□□□ -0.11
CD44-206ENST00000415148 KANK4Q5T7N3 995 aaPredicted RBP14.35□□□□□ -0.11
CD44-206ENST00000415148 ARHGAP35Q9NRY4 1499 aa14.34□□□□□ -0.11
CD44-206ENST00000415148 MAP3K1Q13233 1512 aa14.34□□□□□ -0.11
CD44-206ENST00000415148 CCNB3Q8WWL7 1395 aa14.3□□□□□ -0.12
CD44-206ENST00000415148 IGF1RP08069 1367 aa14.28□□□□□ -0.12
CD44-206ENST00000415148 CC2D2AQ9P2K1 1620 aa14.27□□□□□ -0.13
CD44-206ENST00000415148 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
CD44-206ENST00000415148 MYT1Q01538 1121 aa14.24□□□□□ -0.13
CD44-206ENST00000415148 TIAM1Q13009 1591 aa14.24□□□□□ -0.13
CD44-206ENST00000415148 SUPT16HQ9Y5B9 1047 aaKnown RBP14.22□□□□□ -0.13
CD44-206ENST00000415148 CARMIL1Q5VZK9 1371 aa14.22□□□□□ -0.13
CD44-206ENST00000415148 FGD5Q6ZNL6 1462 aa14.19□□□□□ -0.14
CD44-206ENST00000415148 FHAD1B1AJZ9 1412 aa14.18□□□□□ -0.14
CD44-206ENST00000415148 KCNH8Q96L42 1107 aa14.18□□□□□ -0.14
CD44-206ENST00000415148 LRRC9Q6ZRR7 1453 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 228.3 ms