RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.21
SNX13-202ENST00000409604 TSPY4P0CV99 314 aa16.38■□□□□ 0.21
SNX13-202ENST00000409604 TSPY10P0CW01 314 aa16.38■□□□□ 0.21
SNX13-202ENST00000409604 JPH4Q96JJ6 628 aa16.38■□□□□ 0.21
SNX13-202ENST00000409604 CFDP1Q9UEE9 299 aaPredicted RBP16.37■□□□□ 0.21
SNX13-202ENST00000409604 FGD5Q6ZNL6 1462 aa16.37■□□□□ 0.21
SNX13-202ENST00000409604 HIRIP3Q9BW71 556 aaPredicted RBP16.36■□□□□ 0.21
SNX13-202ENST00000409604 ESF1Q9H501 851 aaKnown RBP16.34■□□□□ 0.21
SNX13-202ENST00000409604 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
SNX13-202ENST00000409604 FHOD3Q2V2M9 1422 aa16.31■□□□□ 0.2
SNX13-202ENST00000409604 IGF1RP08069 1367 aa16.29■□□□□ 0.2
SNX13-202ENST00000409604 MLECQ14165 292 aa16.28■□□□□ 0.2
SNX13-202ENST00000409604 CFTRP13569 1480 aa16.27■□□□□ 0.19
SNX13-202ENST00000409604 STAG3Q9UJ98 1225 aa16.26■□□□□ 0.19
SNX13-202ENST00000409604 ARID4BQ4LE39 1312 aaPredicted RBP16.26■□□□□ 0.19
SNX13-202ENST00000409604 RGL3Q3MIN7 710 aa16.25■□□□□ 0.19
SNX13-202ENST00000409604 DIEXFQ68CQ4 756 aaKnown RBP16.22■□□□□ 0.19
SNX13-202ENST00000409604 OSCARQ8IYS5 282 aa16.22■□□□□ 0.19
SNX13-202ENST00000409604 GAPVD1Q14C86 1478 aa16.21■□□□□ 0.19
SNX13-202ENST00000409604 SYNJ1O43426 1573 aa16.18■□□□□ 0.18
SNX13-202ENST00000409604 PLEKHG5O94827 1062 aa16.17■□□□□ 0.18
SNX13-202ENST00000409604 FOXD1Q16676 465 aa16.16■□□□□ 0.18
SNX13-202ENST00000409604 SIN3AQ96ST3 1273 aa16.16■□□□□ 0.18
SNX13-202ENST00000409604 CCNB3Q8WWL7 1395 aa16.12■□□□□ 0.17
SNX13-202ENST00000409604 HMGXB3Q12766 1538 aa16.12■□□□□ 0.17
SNX13-202ENST00000409604 CUX1P39880 1505 aa16.12■□□□□ 0.17
SNX13-202ENST00000409604 CARMIL2Q6F5E8 1435 aa16.11■□□□□ 0.17
SNX13-202ENST00000409604 HNRNPMP52272 730 aaKnown RBP eCLIP16.11■□□□□ 0.178e-7■■■■■ 42.1
SNX13-202ENST00000409604 TOPBP1Q92547 1522 aa16.11■□□□□ 0.17
SNX13-202ENST00000409604 POLA1P09884 1462 aaPredicted RBP16.11■□□□□ 0.17
SNX13-202ENST00000409604 VPS8Q8N3P4 1428 aa16.1■□□□□ 0.17
SNX13-202ENST00000409604 GGT6Q6P531 493 aa16.1■□□□□ 0.17
SNX13-202ENST00000409604 TONSLQ96HA7 1378 aa16.1■□□□□ 0.17
SNX13-202ENST00000409604 CENPBP07199 599 aaPredicted RBP16.1■□□□□ 0.17
SNX13-202ENST00000409604 FHAD1B1AJZ9 1412 aa16.08■□□□□ 0.16
SNX13-202ENST00000409604 SENP3-EIF4A1A0A087X0R7 540 aa16.04■□□□□ 0.16
SNX13-202ENST00000409604 PTPRGP23470 1445 aa16.04■□□□□ 0.16
SNX13-202ENST00000409604 DDX10Q13206 875 aaKnown RBP16.04■□□□□ 0.16
SNX13-202ENST00000409604 MRC2Q9UBG0 1479 aa16.04■□□□□ 0.16
SNX13-202ENST00000409604 ZNF316A6NFI3 1004 aaPredicted RBP16.02■□□□□ 0.16
SNX13-202ENST00000409604 ZNF644Q9H582 1327 aaPredicted RBP16.01■□□□□ 0.15
SNX13-202ENST00000409604 ZNF608Q9ULD9 1512 aaPredicted RBP15.99■□□□□ 0.15
SNX13-202ENST00000409604 FMN1Q68DA7 1419 aa15.97■□□□□ 0.15
SNX13-202ENST00000409604 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
SNX13-202ENST00000409604 GRIN2BQ13224 1484 aa15.94■□□□□ 0.14
SNX13-202ENST00000409604 SNAPC4Q5SXM2 1469 aa15.93■□□□□ 0.14
SNX13-202ENST00000409604 EFCAB2Q5VUJ9 269 aa15.93■□□□□ 0.14
SNX13-202ENST00000409604 PPP1R15AO75807 674 aaPredicted RBP15.92■□□□□ 0.14
SNX13-202ENST00000409604 FAM69CQ0P6D2 419 aa15.92■□□□□ 0.14
SNX13-202ENST00000409604 NUTM2DQ5VT03 806 aaPredicted RBP15.92■□□□□ 0.14
SNX13-202ENST00000409604 SALL2Q9Y467 1007 aaPredicted RBP15.91■□□□□ 0.14
SNX13-202ENST00000409604 KIF3BO15066 747 aa15.91■□□□□ 0.14
SNX13-202ENST00000409604 PRG4Q92954 1404 aaPredicted RBP15.89■□□□□ 0.13
SNX13-202ENST00000409604 ANP32CO43423 234 aa15.88■□□□□ 0.13
SNX13-202ENST00000409604 SLC24A1O60721 1099 aa15.88■□□□□ 0.13
SNX13-202ENST00000409604 ARHGAP35Q9NRY4 1499 aa15.88■□□□□ 0.13
SNX13-202ENST00000409604 PKD2Q13563 968 aa15.87■□□□□ 0.13
SNX13-202ENST00000409604 SAFB2Q14151 953 aaKnown RBP eCLIP15.87■□□□□ 0.13
SNX13-202ENST00000409604 TOP2BQ02880 1626 aa15.86■□□□□ 0.13
SNX13-202ENST00000409604 IFT140Q96RY7 1462 aa15.86■□□□□ 0.13
SNX13-202ENST00000409604 NEFLP07196 543 aa15.85■□□□□ 0.13
SNX13-202ENST00000409604 ARAP1Q96P48 1450 aa15.85■□□□□ 0.13
SNX13-202ENST00000409604 DCAF11Q8TEB1 546 aa15.84■□□□□ 0.13
SNX13-202ENST00000409604 PEG3Q9GZU2 1588 aa15.84■□□□□ 0.13
SNX13-202ENST00000409604 LAMC3Q9Y6N6 1575 aa15.84■□□□□ 0.13
SNX13-202ENST00000409604 SCAF1Q9H7N4 1312 aaKnown RBP15.84■□□□□ 0.13
SNX13-202ENST00000409604 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.12
SNX13-202ENST00000409604 AFAP1Q8N556 730 aa15.83■□□□□ 0.12
SNX13-202ENST00000409604 C14orf37Q86TY3 774 aa15.82■□□□□ 0.12
SNX13-202ENST00000409604 BCL11AQ9H165 835 aa15.81■□□□□ 0.12
SNX13-202ENST00000409604 SPAG9O60271 1321 aaKnown RBP15.81■□□□□ 0.12
SNX13-202ENST00000409604 TMC1Q8TDI8 760 aa15.8■□□□□ 0.12
SNX13-202ENST00000409604 RAB3GAP2Q9H2M9 1393 aa15.8■□□□□ 0.12
SNX13-202ENST00000409604 NUP155O75694 1391 aa15.79■□□□□ 0.12
SNX13-202ENST00000409604 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
SNX13-202ENST00000409604 FAM9BQ8IZU0 186 aa15.78■□□□□ 0.12
SNX13-202ENST00000409604 ZBTB7CA1YPR0 619 aa15.77■□□□□ 0.12
SNX13-202ENST00000409604 PRDM2Q13029 1718 aa15.77■□□□□ 0.11
SNX13-202ENST00000409604 MPHOSPH9Q99550 1183 aa15.76■□□□□ 0.11
SNX13-202ENST00000409604 STK26Q9P289 416 aa15.76■□□□□ 0.11
SNX13-202ENST00000409604 KIF21BO75037 1637 aa15.76■□□□□ 0.11
SNX13-202ENST00000409604 CARD11Q9BXL7 1154 aa15.75■□□□□ 0.11
SNX13-202ENST00000409604 PHLDB1Q86UU1 1377 aa15.75■□□□□ 0.11
SNX13-202ENST00000409604 EIF4G2P78344 907 aaKnown RBP eCLIP15.73■□□□□ 0.11
SNX13-202ENST00000409604 RAPGEF3O95398 923 aa15.72■□□□□ 0.11
SNX13-202ENST00000409604 ABCA10Q8WWZ4 1543 aa15.72■□□□□ 0.11
SNX13-202ENST00000409604 SETD5Q9C0A6 1442 aa15.72■□□□□ 0.11
SNX13-202ENST00000409604 MIER1Q8N108 512 aa15.71■□□□□ 0.11
SNX13-202ENST00000409604 WASHC2CQ9Y4E1 1318 aa15.71■□□□□ 0.11
SNX13-202ENST00000409604 PELP1Q8IZL8 1130 aaKnown RBP15.71■□□□□ 0.11
SNX13-202ENST00000409604 CCDC18Q5T9S5 1454 aa15.7■□□□□ 0.1
SNX13-202ENST00000409604 TNNT2P45379 298 aaPredicted RBP15.69■□□□□ 0.1
SNX13-202ENST00000409604 LMOD2Q6P5Q4 547 aa15.68■□□□□ 0.1
SNX13-202ENST00000409604 SOX12O15370 315 aa15.67■□□□□ 0.1
SNX13-202ENST00000409604 NUTM2FA1L443 756 aa15.67■□□□□ 0.1
SNX13-202ENST00000409604 PLB1Q6P1J6 1458 aa15.66■□□□□ 0.1
SNX13-202ENST00000409604 ANKRD30AQ9BXX3 1397 aa15.65■□□□□ 0.1
SNX13-202ENST00000409604 PPM1GO15355 546 aaPredicted RBP15.65■□□□□ 0.1
SNX13-202ENST00000409604 POGKQ9P215 609 aa15.64■□□□□ 0.09
SNX13-202ENST00000409604 L3MBTL2Q969R5 705 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms