RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 NISCHQ9Y2I1 1504 aa22.15■■□□□ 1.14
SNX13-202ENST00000409604 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
SNX13-202ENST00000409604 SHROOM4Q9ULL8 1493 aa20.54■□□□□ 0.88
SNX13-202ENST00000409604 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
SNX13-202ENST00000409604 EHMT2Q96KQ7 1210 aa19.55■□□□□ 0.72
SNX13-202ENST00000409604 ABCC9O60706 1549 aa19.5■□□□□ 0.71
SNX13-202ENST00000409604 PABPN1Q86U42 306 aaKnown RBP eCLIP19.18■□□□□ 0.66
SNX13-202ENST00000409604 FAM9AQ8IZU1 332 aaPredicted RBP19.07■□□□□ 0.64
SNX13-202ENST00000409604 RANGAP1P46060 587 aaPredicted RBP18.77■□□□□ 0.6
SNX13-202ENST00000409604 TTBK1Q5TCY1 1321 aaPredicted RBP18.63■□□□□ 0.57
SNX13-202ENST00000409604 TRIM41Q8WV44 630 aa18.58■□□□□ 0.56
SNX13-202ENST00000409604 SCRIBQ14160 1630 aa18.36■□□□□ 0.53
SNX13-202ENST00000409604 ZCCHC6Q5VYS8 1495 aaKnown RBP18.32■□□□□ 0.52
SNX13-202ENST00000409604 CCDC180Q9P1Z9 1646 aa18.28■□□□□ 0.52
SNX13-202ENST00000409604 ATP1B4Q9UN42 357 aaPredicted RBP18.25■□□□□ 0.51
SNX13-202ENST00000409604 PPARGC1BQ86YN6 1023 aaKnown RBP18.25■□□□□ 0.51
SNX13-202ENST00000409604 UBTFP17480 764 aaKnown RBP18.24■□□□□ 0.51
SNX13-202ENST00000409604 LOC105371045A0A1W2PR82 267 aa18.21■□□□□ 0.5
SNX13-202ENST00000409604 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
SNX13-202ENST00000409604 APLP2Q06481 763 aa18.07■□□□□ 0.48
SNX13-202ENST00000409604 PCGF6Q9BYE7 350 aa17.98■□□□□ 0.47
SNX13-202ENST00000409604 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
SNX13-202ENST00000409604 FBLN2P98095 1184 aa17.8■□□□□ 0.44
SNX13-202ENST00000409604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.74■□□□□ 0.43
SNX13-202ENST00000409604 HNRNPUL2Q1KMD3 747 aaKnown RBP17.74■□□□□ 0.43
SNX13-202ENST00000409604 CECR2Q9BXF3 1484 aa17.73■□□□□ 0.43
SNX13-202ENST00000409604 NACADO15069 1562 aa17.71■□□□□ 0.43
SNX13-202ENST00000409604 ITGAEP38570 1179 aa17.66■□□□□ 0.42
SNX13-202ENST00000409604 RSF1Q96T23 1441 aaPredicted RBP17.61■□□□□ 0.41
SNX13-202ENST00000409604 ARID3CA6NKF2 412 aa17.6■□□□□ 0.41
SNX13-202ENST00000409604 P3H3Q8IVL6 736 aa17.59■□□□□ 0.41
SNX13-202ENST00000409604 MYT1LQ9UL68 1186 aa17.4■□□□□ 0.38
SNX13-202ENST00000409604 CCER1Q8TC90 406 aaPredicted RBP17.4■□□□□ 0.38
SNX13-202ENST00000409604 DCAF1Q9Y4B6 1507 aa17.38■□□□□ 0.37
SNX13-202ENST00000409604 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
SNX13-202ENST00000409604 MROH2BQ7Z745 1585 aa17.36■□□□□ 0.37
SNX13-202ENST00000409604 BAZ1BQ9UIG0 1483 aaKnown RBP17.34■□□□□ 0.37
SNX13-202ENST00000409604 BAZ1AQ9NRL2 1556 aaPredicted RBP17.2■□□□□ 0.34
SNX13-202ENST00000409604 FAM50AQ14320 339 aaKnown RBP17.18■□□□□ 0.34
SNX13-202ENST00000409604 TRIM26Q12899 539 aaPredicted RBP17.15■□□□□ 0.34
SNX13-202ENST00000409604 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
SNX13-202ENST00000409604 WIZO95785 1651 aa17.11■□□□□ 0.33
SNX13-202ENST00000409604 CHMP7Q8WUX9 453 aaPredicted RBP17.09■□□□□ 0.33
SNX13-202ENST00000409604 MYO15BQ96JP2 1530 aa17.07■□□□□ 0.32
SNX13-202ENST00000409604 ERCC6Q03468 1493 aa17.06■□□□□ 0.32
SNX13-202ENST00000409604 CCDC88BA6NC98 1476 aa17.05■□□□□ 0.32
SNX13-202ENST00000409604 WRNQ14191 1432 aaPredicted RBP eCLIP17.03■□□□□ 0.32
SNX13-202ENST00000409604 ZNF777Q9ULD5 760 aaPredicted RBP17.02■□□□□ 0.31
SNX13-202ENST00000409604 CNGB1Q14028 1251 aaPredicted RBP16.99■□□□□ 0.31
SNX13-202ENST00000409604 ABCC8Q09428 1581 aa16.96■□□□□ 0.31
SNX13-202ENST00000409604 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.31
SNX13-202ENST00000409604 SOGA1O94964 1423 aa16.92■□□□□ 0.3
SNX13-202ENST00000409604 TDRD9Q8NDG6 1382 aaKnown RBP16.9■□□□□ 0.3
SNX13-202ENST00000409604 POLR3GLQ9BT43 218 aa16.89■□□□□ 0.3
SNX13-202ENST00000409604 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
SNX13-202ENST00000409604 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
SNX13-202ENST00000409604 NEUROD1Q13562 356 aa16.84■□□□□ 0.29
SNX13-202ENST00000409604 SMARCA4P51532 1647 aa16.84■□□□□ 0.29
SNX13-202ENST00000409604 KCNH8Q96L42 1107 aa16.83■□□□□ 0.28
SNX13-202ENST00000409604 SMARCA2P51531 1590 aa16.83■□□□□ 0.28
SNX13-202ENST00000409604 CHIC2Q9UKJ5 165 aa16.79■□□□□ 0.28
SNX13-202ENST00000409604 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
SNX13-202ENST00000409604 CUX2O14529 1486 aa16.77■□□□□ 0.28
SNX13-202ENST00000409604 EIF4G1Q04637 1599 aaKnown RBP16.75■□□□□ 0.27
SNX13-202ENST00000409604 ZNF326Q5BKZ1 582 aaKnown RBP16.73■□□□□ 0.27
SNX13-202ENST00000409604 KIF27Q86VH2 1401 aa16.72■□□□□ 0.27
SNX13-202ENST00000409604 NPM1P06748 294 aaKnown RBP eCLIP16.72■□□□□ 0.27
SNX13-202ENST00000409604 YTHDC1Q96MU7 727 aaKnown RBP16.71■□□□□ 0.27
SNX13-202ENST00000409604 TOP2AP11388 1531 aaKnown RBP16.71■□□□□ 0.27
SNX13-202ENST00000409604 CLIP1P30622 1438 aa16.7■□□□□ 0.26
SNX13-202ENST00000409604 NESP48681 1621 aa16.69■□□□□ 0.26
SNX13-202ENST00000409604 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
SNX13-202ENST00000409604 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
SNX13-202ENST00000409604 ZEB1P37275 1124 aaPredicted RBP16.66■□□□□ 0.26
SNX13-202ENST00000409604 RUSC2Q8N2Y8 1516 aa16.66■□□□□ 0.26
SNX13-202ENST00000409604 BICRAQ9NZM4 1560 aa16.65■□□□□ 0.26
SNX13-202ENST00000409604 CDK11AQ9UQ88 783 aaPredicted RBP16.64■□□□□ 0.25
SNX13-202ENST00000409604 CARMIL1Q5VZK9 1371 aa16.64■□□□□ 0.25
SNX13-202ENST00000409604 HRCP23327 699 aa16.64■□□□□ 0.25
SNX13-202ENST00000409604 CEP162Q5TB80 1403 aa16.62■□□□□ 0.25
SNX13-202ENST00000409604 FANCD2Q9BXW9 1451 aa16.59■□□□□ 0.25
SNX13-202ENST00000409604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.59■□□□□ 0.25
SNX13-202ENST00000409604 CC2D2AQ9P2K1 1620 aa16.59■□□□□ 0.25
SNX13-202ENST00000409604 MTUS2Q5JR59 1369 aa16.57■□□□□ 0.24
SNX13-202ENST00000409604 GOLGA3Q08378 1498 aa16.55■□□□□ 0.24
SNX13-202ENST00000409604 NCAPD3P42695 1498 aa16.54■□□□□ 0.24
SNX13-202ENST00000409604 SLC4A1APQ9BWU0 796 aaKnown RBP16.54■□□□□ 0.24
SNX13-202ENST00000409604 RRP7BPQ9NSQ0 103 aa16.53■□□□□ 0.24
SNX13-202ENST00000409604 RAD54L2Q9Y4B4 1467 aa16.53■□□□□ 0.24
SNX13-202ENST00000409604 CEP164Q9UPV0 1460 aa16.52■□□□□ 0.23
SNX13-202ENST00000409604 PLEKHD1A6NEE1 506 aa16.49■□□□□ 0.23
SNX13-202ENST00000409604 CHGAP10645 457 aaKnown RBP16.47■□□□□ 0.23
SNX13-202ENST00000409604 TRHP20396 242 aaPredicted RBP16.46■□□□□ 0.23
SNX13-202ENST00000409604 EEA1Q15075 1411 aa16.44■□□□□ 0.22
SNX13-202ENST00000409604 KANK4Q5T7N3 995 aaPredicted RBP16.44■□□□□ 0.22
SNX13-202ENST00000409604 BCANQ96GW7 911 aa16.44■□□□□ 0.22
SNX13-202ENST00000409604 TNIKQ9UKE5 1360 aa16.43■□□□□ 0.22
SNX13-202ENST00000409604 AQRO60306 1485 aaKnown RBP eCLIP16.43■□□□□ 0.22
SNX13-202ENST00000409604 CYB5RLQ6IPT4 315 aa16.39■□□□□ 0.21
SNX13-202ENST00000409604 RAPGEF2Q9Y4G8 1499 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms