RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 RIMBP3Q9UFD9 1639 aa16.33■□□□□ 0.21
NIF3L1-204ENST00000409357 TRIM41Q8WV44 630 aa16.31■□□□□ 0.2
NIF3L1-204ENST00000409357 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
NIF3L1-204ENST00000409357 SYNJ2O15056 1496 aa16.29■□□□□ 0.2
NIF3L1-204ENST00000409357 GTF3C3Q9Y5Q9 886 aa16.29■□□□□ 0.2
NIF3L1-204ENST00000409357 CLASP1Q7Z460 1538 aa16.26■□□□□ 0.19
NIF3L1-204ENST00000409357 CHMP7Q8WUX9 453 aaPredicted RBP16.25■□□□□ 0.19
NIF3L1-204ENST00000409357 ADAMTS12P58397 1594 aa16.24■□□□□ 0.19
NIF3L1-204ENST00000409357 LOC105371045A0A1W2PR82 267 aa16.23■□□□□ 0.19
NIF3L1-204ENST00000409357 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
NIF3L1-204ENST00000409357 GRIN2AQ12879 1464 aa16.19■□□□□ 0.18
NIF3L1-204ENST00000409357 ARAP1Q96P48 1450 aa16.17■□□□□ 0.18
NIF3L1-204ENST00000409357 CEP170Q5SW79 1584 aa16.16■□□□□ 0.18
NIF3L1-204ENST00000409357 FHAD1B1AJZ9 1412 aa16.14■□□□□ 0.17
NIF3L1-204ENST00000409357 EHMT2Q96KQ7 1210 aa16.13■□□□□ 0.17
NIF3L1-204ENST00000409357 CYB5RLQ6IPT4 315 aa16.11■□□□□ 0.17
NIF3L1-204ENST00000409357 NUP160Q12769 1436 aa16.11■□□□□ 0.17
NIF3L1-204ENST00000409357 ERCC6L2Q5T890 1561 aa16.09■□□□□ 0.17
NIF3L1-204ENST00000409357 KIF27Q86VH2 1401 aa16.07■□□□□ 0.16
NIF3L1-204ENST00000409357 DIEXFQ68CQ4 756 aaKnown RBP16.05■□□□□ 0.16
NIF3L1-204ENST00000409357 IGF1RP08069 1367 aa16.05■□□□□ 0.16
NIF3L1-204ENST00000409357 CLSPNQ9HAW4 1339 aa16.05■□□□□ 0.16
NIF3L1-204ENST00000409357 SHROOM2Q13796 1616 aa16.04■□□□□ 0.16
NIF3L1-204ENST00000409357 CUL7Q14999 1698 aa16.03■□□□□ 0.16
NIF3L1-204ENST00000409357 RUSC2Q8N2Y8 1516 aa16.02■□□□□ 0.16
NIF3L1-204ENST00000409357 CARMIL1Q5VZK9 1371 aa15.93■□□□□ 0.14
NIF3L1-204ENST00000409357 PRG4Q92954 1404 aaPredicted RBP15.92■□□□□ 0.14
NIF3L1-204ENST00000409357 JPH4Q96JJ6 628 aa15.89■□□□□ 0.13
NIF3L1-204ENST00000409357 BCL11AQ9H165 835 aa15.89■□□□□ 0.13
NIF3L1-204ENST00000409357 KIAA0586Q9BVV6 1533 aa15.89■□□□□ 0.13
NIF3L1-204ENST00000409357 PIAS4Q8N2W9 510 aaPredicted RBP15.89■□□□□ 0.13
NIF3L1-204ENST00000409357 ANP32EQ9BTT0 268 aa15.86■□□□□ 0.13
NIF3L1-204ENST00000409357 PPP4R3CPQ6ZMV5 832 aa15.85■□□□□ 0.13
NIF3L1-204ENST00000409357 RAPGEF2Q9Y4G8 1499 aa15.82■□□□□ 0.12
NIF3L1-204ENST00000409357 IQGAP2Q13576 1575 aa15.82■□□□□ 0.12
NIF3L1-204ENST00000409357 TRHP20396 242 aaPredicted RBP15.81■□□□□ 0.12
NIF3L1-204ENST00000409357 CCER1Q8TC90 406 aaPredicted RBP15.8■□□□□ 0.12
NIF3L1-204ENST00000409357 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
NIF3L1-204ENST00000409357 ADCY10Q96PN6 1610 aa15.77■□□□□ 0.12
NIF3L1-204ENST00000409357 PRXQ9BXM0 1461 aa15.77■□□□□ 0.11
NIF3L1-204ENST00000409357 CTTNBP2Q8WZ74 1663 aa15.76■□□□□ 0.11
NIF3L1-204ENST00000409357 DISP1Q96F81 1524 aa15.74■□□□□ 0.11
NIF3L1-204ENST00000409357 UGGT2Q9NYU1 1516 aa15.71■□□□□ 0.11
NIF3L1-204ENST00000409357 KIF13AQ9H1H9 1805 aa15.7■□□□□ 0.1
NIF3L1-204ENST00000409357 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
NIF3L1-204ENST00000409357 KIAA0556O60303 1618 aa15.7■□□□□ 0.1
NIF3L1-204ENST00000409357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.68■□□□□ 0.1
NIF3L1-204ENST00000409357 PTPRGP23470 1445 aa15.68■□□□□ 0.1
NIF3L1-204ENST00000409357 CARMIL2Q6F5E8 1435 aa15.68■□□□□ 0.1
NIF3L1-204ENST00000409357 TNIKQ9UKE5 1360 aa15.67■□□□□ 0.1
NIF3L1-204ENST00000409357 CSRNP3Q8WYN3 585 aa15.65■□□□□ 0.1
NIF3L1-204ENST00000409357 MAPKBP1O60336 1514 aa15.64■□□□□ 0.09
NIF3L1-204ENST00000409357 SLC4A1APQ9BWU0 796 aaKnown RBP15.63■□□□□ 0.09
NIF3L1-204ENST00000409357 EEA1Q15075 1411 aa15.61■□□□□ 0.09
NIF3L1-204ENST00000409357 DIP2BQ9P265 1576 aa15.6■□□□□ 0.09
NIF3L1-204ENST00000409357 ABCC2Q92887 1545 aa15.59■□□□□ 0.09
NIF3L1-204ENST00000409357 UACAQ9BZF9 1416 aa15.58■□□□□ 0.09
NIF3L1-204ENST00000409357 ABCC10Q5T3U5 1492 aa15.58■□□□□ 0.08
NIF3L1-204ENST00000409357 UHRF1BP1LA0JNW5 1464 aa15.57■□□□□ 0.08
NIF3L1-204ENST00000409357 NPM1P06748 294 aaKnown RBP eCLIP15.57■□□□□ 0.08
NIF3L1-204ENST00000409357 TSHZ2Q9NRE2 1034 aa15.57■□□□□ 0.08
NIF3L1-204ENST00000409357 PLB1Q6P1J6 1458 aa15.56■□□□□ 0.08
NIF3L1-204ENST00000409357 KIF21BO75037 1637 aa15.56■□□□□ 0.08
NIF3L1-204ENST00000409357 GOLGA3Q08378 1498 aa15.55■□□□□ 0.08
NIF3L1-204ENST00000409357 ZCCHC11Q5TAX3 1644 aaKnown RBP15.55■□□□□ 0.08
NIF3L1-204ENST00000409357 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
NIF3L1-204ENST00000409357 SUPT16HQ9Y5B9 1047 aaKnown RBP15.54■□□□□ 0.08
NIF3L1-204ENST00000409357 SAMD9Q5K651 1589 aa15.54■□□□□ 0.08
NIF3L1-204ENST00000409357 FAM69CQ0P6D2 419 aa15.53■□□□□ 0.08
NIF3L1-204ENST00000409357 MIER1Q8N108 512 aa15.53■□□□□ 0.08
NIF3L1-204ENST00000409357 KDM5BQ9UGL1 1544 aa15.53■□□□□ 0.08
NIF3L1-204ENST00000409357 ASXL2Q76L83 1435 aa15.52■□□□□ 0.08
NIF3L1-204ENST00000409357 TSPOAP1O95153 1857 aa15.52■□□□□ 0.07
NIF3L1-204ENST00000409357 ABCA8O94911 1581 aa15.52■□□□□ 0.07
NIF3L1-204ENST00000409357 P3H3Q8IVL6 736 aa15.51■□□□□ 0.07
NIF3L1-204ENST00000409357 RANGAP1P46060 587 aaPredicted RBP15.49■□□□□ 0.07
NIF3L1-204ENST00000409357 NCBP3Q53F19 620 aaKnown RBP15.49■□□□□ 0.07
NIF3L1-204ENST00000409357 PRKCSHP14314 528 aaPredicted RBP15.47■□□□□ 0.07
NIF3L1-204ENST00000409357 NPM3O75607 178 aaKnown RBP15.46■□□□□ 0.07
NIF3L1-204ENST00000409357 PPRC1Q5VV67 1664 aaKnown RBP15.45■□□□□ 0.06
NIF3L1-204ENST00000409357 FHOD3Q2V2M9 1422 aa15.44■□□□□ 0.06
NIF3L1-204ENST00000409357 YTHDC1Q96MU7 727 aaKnown RBP15.44■□□□□ 0.06
NIF3L1-204ENST00000409357 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
NIF3L1-204ENST00000409357 GLI2P10070 1586 aa15.42■□□□□ 0.06
NIF3L1-204ENST00000409357 ARID3CA6NKF2 412 aa15.42■□□□□ 0.06
NIF3L1-204ENST00000409357 WDR7Q9Y4E6 1490 aa15.41■□□□□ 0.06
NIF3L1-204ENST00000409357 RAPGEF6Q8TEU7 1601 aa15.4■□□□□ 0.06
NIF3L1-204ENST00000409357 MAP3K4Q9Y6R4 1608 aa15.4■□□□□ 0.06
NIF3L1-204ENST00000409357 MYT1LQ9UL68 1186 aa15.4■□□□□ 0.06
NIF3L1-204ENST00000409357 EFCAB5A4FU69 1503 aa15.38■□□□□ 0.05
NIF3L1-204ENST00000409357 ATP10BO94823 1461 aa15.37■□□□□ 0.05
NIF3L1-204ENST00000409357 UBTFP17480 764 aaKnown RBP15.37■□□□□ 0.05
NIF3L1-204ENST00000409357 KDM6BO15054 1643 aa15.37■□□□□ 0.05
NIF3L1-204ENST00000409357 NUP153P49790 1475 aaKnown RBP15.36■□□□□ 0.05
NIF3L1-204ENST00000409357 ARHGAP35Q9NRY4 1499 aa15.33■□□□□ 0.04
NIF3L1-204ENST00000409357 KCNH8Q96L42 1107 aa15.32■□□□□ 0.04
NIF3L1-204ENST00000409357 CFAP43Q8NDM7 1665 aa15.31■□□□□ 0.04
NIF3L1-204ENST00000409357 APLP2Q06481 763 aa15.31■□□□□ 0.04
NIF3L1-204ENST00000409357 COL17A1Q9UMD9 1497 aaPredicted RBP15.3■□□□□ 0.04
NIF3L1-204ENST00000409357 CDK13Q14004 1512 aaKnown RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms