RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 NISCHQ9Y2I1 1504 aa22.97■■□□□ 1.27
NIF3L1-204ENST00000409357 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
NIF3L1-204ENST00000409357 AEBP2Q6ZN18 517 aaPredicted RBP21.56■■□□□ 1.04
NIF3L1-204ENST00000409357 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
NIF3L1-204ENST00000409357 ABCC9O60706 1549 aa20.23■□□□□ 0.83
NIF3L1-204ENST00000409357 RB1CC1Q8TDY2 1594 aa19.33■□□□□ 0.69
NIF3L1-204ENST00000409357 NACADO15069 1562 aa19.26■□□□□ 0.67
NIF3L1-204ENST00000409357 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
NIF3L1-204ENST00000409357 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
NIF3L1-204ENST00000409357 ZCCHC6Q5VYS8 1495 aaKnown RBP19.12■□□□□ 0.65
NIF3L1-204ENST00000409357 MYO15BQ96JP2 1530 aa19.06■□□□□ 0.64
NIF3L1-204ENST00000409357 UNC13AQ9UPW8 1703 aa19.03■□□□□ 0.64
NIF3L1-204ENST00000409357 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
NIF3L1-204ENST00000409357 PABPN1Q86U42 306 aaKnown RBP eCLIP18.87■□□□□ 0.61
NIF3L1-204ENST00000409357 BICRAQ9NZM4 1560 aa18.84■□□□□ 0.61
NIF3L1-204ENST00000409357 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
NIF3L1-204ENST00000409357 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
NIF3L1-204ENST00000409357 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
NIF3L1-204ENST00000409357 EIF4G1Q04637 1599 aaKnown RBP18.32■□□□□ 0.52
NIF3L1-204ENST00000409357 CC2D2AQ9P2K1 1620 aa18.29■□□□□ 0.52
NIF3L1-204ENST00000409357 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
NIF3L1-204ENST00000409357 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
NIF3L1-204ENST00000409357 SENP3Q9H4L4 574 aaPredicted RBP17.95■□□□□ 0.46
NIF3L1-204ENST00000409357 HRCP23327 699 aa17.93■□□□□ 0.46
NIF3L1-204ENST00000409357 SMARCA4P51532 1647 aa17.89■□□□□ 0.45
NIF3L1-204ENST00000409357 PLPPR3Q6T4P5 718 aa17.8■□□□□ 0.44
NIF3L1-204ENST00000409357 ATAD2BQ9ULI0 1458 aa17.79■□□□□ 0.44
NIF3L1-204ENST00000409357 BAZ1AQ9NRL2 1556 aaPredicted RBP17.79■□□□□ 0.44
NIF3L1-204ENST00000409357 NCAPD3P42695 1498 aa17.77■□□□□ 0.44
NIF3L1-204ENST00000409357 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
NIF3L1-204ENST00000409357 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
NIF3L1-204ENST00000409357 HMGXB3Q12766 1538 aa17.7■□□□□ 0.42
NIF3L1-204ENST00000409357 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
NIF3L1-204ENST00000409357 MYT1Q01538 1121 aa17.67■□□□□ 0.42
NIF3L1-204ENST00000409357 BAZ1BQ9UIG0 1483 aaKnown RBP17.63■□□□□ 0.41
NIF3L1-204ENST00000409357 WIZO95785 1651 aa17.57■□□□□ 0.4
NIF3L1-204ENST00000409357 NESP48681 1621 aa17.5■□□□□ 0.39
NIF3L1-204ENST00000409357 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.38
NIF3L1-204ENST00000409357 ERCC6Q03468 1493 aa17.4■□□□□ 0.38
NIF3L1-204ENST00000409357 LAMC3Q9Y6N6 1575 aa17.34■□□□□ 0.37
NIF3L1-204ENST00000409357 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
NIF3L1-204ENST00000409357 KIF21AQ7Z4S6 1674 aa17.3■□□□□ 0.36
NIF3L1-204ENST00000409357 THOC2Q8NI27 1593 aaKnown RBP17.25■□□□□ 0.35
NIF3L1-204ENST00000409357 CADPSQ9ULU8 1353 aa17.24■□□□□ 0.35
NIF3L1-204ENST00000409357 CUX2O14529 1486 aa17.24■□□□□ 0.35
NIF3L1-204ENST00000409357 PDS5BQ9NTI5 1447 aa17.18■□□□□ 0.34
NIF3L1-204ENST00000409357 CFTRP13569 1480 aa17.14■□□□□ 0.33
NIF3L1-204ENST00000409357 CCDC88BA6NC98 1476 aa17.11■□□□□ 0.33
NIF3L1-204ENST00000409357 FANCD2Q9BXW9 1451 aa17.08■□□□□ 0.32
NIF3L1-204ENST00000409357 PCGF6Q9BYE7 350 aa17.07■□□□□ 0.32
NIF3L1-204ENST00000409357 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
NIF3L1-204ENST00000409357 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
NIF3L1-204ENST00000409357 PPARGC1BQ86YN6 1023 aaKnown RBP17.06■□□□□ 0.32
NIF3L1-204ENST00000409357 WDR62O43379 1518 aa17.05■□□□□ 0.32
NIF3L1-204ENST00000409357 PRDM2Q13029 1718 aa17.05■□□□□ 0.32
NIF3L1-204ENST00000409357 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
NIF3L1-204ENST00000409357 URB2Q14146 1524 aaKnown RBP16.96■□□□□ 0.31
NIF3L1-204ENST00000409357 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
NIF3L1-204ENST00000409357 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
NIF3L1-204ENST00000409357 DNAJC5Q9H3Z4 198 aa16.89■□□□□ 0.29
NIF3L1-204ENST00000409357 ADRA2BP18089 450 aa16.88■□□□□ 0.29
NIF3L1-204ENST00000409357 TOPBP1Q92547 1522 aa16.81■□□□□ 0.28
NIF3L1-204ENST00000409357 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
NIF3L1-204ENST00000409357 TTBK1Q5TCY1 1321 aaPredicted RBP16.79■□□□□ 0.28
NIF3L1-204ENST00000409357 DNMBPQ6XZF7 1577 aa16.77■□□□□ 0.27
NIF3L1-204ENST00000409357 PPP6R1Q9UPN7 881 aa16.76■□□□□ 0.27
NIF3L1-204ENST00000409357 FOXD1Q16676 465 aa16.72■□□□□ 0.27
NIF3L1-204ENST00000409357 ZNF608Q9ULD9 1512 aaPredicted RBP16.72■□□□□ 0.27
NIF3L1-204ENST00000409357 ABCC8Q09428 1581 aa16.69■□□□□ 0.26
NIF3L1-204ENST00000409357 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
NIF3L1-204ENST00000409357 TARBP1Q13395 1621 aaKnown RBP16.67■□□□□ 0.26
NIF3L1-204ENST00000409357 POLA1P09884 1462 aaPredicted RBP16.67■□□□□ 0.26
NIF3L1-204ENST00000409357 CUX1P39880 1505 aa16.65■□□□□ 0.26
NIF3L1-204ENST00000409357 EIF4G3O43432 1585 aaKnown RBP16.64■□□□□ 0.25
NIF3L1-204ENST00000409357 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
NIF3L1-204ENST00000409357 FGD5Q6ZNL6 1462 aa16.6■□□□□ 0.25
NIF3L1-204ENST00000409357 ACIN1Q9UKV3 1341 aaKnown RBP16.6■□□□□ 0.25
NIF3L1-204ENST00000409357 AQRO60306 1485 aaKnown RBP eCLIP16.57■□□□□ 0.24
NIF3L1-204ENST00000409357 SOGA1O94964 1423 aa16.54■□□□□ 0.24
NIF3L1-204ENST00000409357 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
NIF3L1-204ENST00000409357 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
NIF3L1-204ENST00000409357 CHD1O14646 1710 aa16.48■□□□□ 0.23
NIF3L1-204ENST00000409357 SYNJ1O43426 1573 aa16.48■□□□□ 0.23
NIF3L1-204ENST00000409357 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
NIF3L1-204ENST00000409357 BIVM-ERCC5R4GMW8 1640 aa16.45■□□□□ 0.22
NIF3L1-204ENST00000409357 TOP2BQ02880 1626 aa16.44■□□□□ 0.22
NIF3L1-204ENST00000409357 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
NIF3L1-204ENST00000409357 CENPBP07199 599 aaPredicted RBP16.41■□□□□ 0.22
NIF3L1-204ENST00000409357 SNAPC4Q5SXM2 1469 aa16.41■□□□□ 0.22
NIF3L1-204ENST00000409357 KCNA4P22459 653 aa16.4■□□□□ 0.22
NIF3L1-204ENST00000409357 PBRM1Q86U86 1689 aa16.4■□□□□ 0.22
NIF3L1-204ENST00000409357 ABCA5Q8WWZ7 1642 aa16.4■□□□□ 0.22
NIF3L1-204ENST00000409357 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
NIF3L1-204ENST00000409357 GRIN2BQ13224 1484 aa16.36■□□□□ 0.21
NIF3L1-204ENST00000409357 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
NIF3L1-204ENST00000409357 FBLN2P98095 1184 aa16.36■□□□□ 0.21
NIF3L1-204ENST00000409357 NEUROD1Q13562 356 aa16.35■□□□□ 0.21
NIF3L1-204ENST00000409357 MAGI1Q96QZ7 1491 aaPredicted RBP16.34■□□□□ 0.21
NIF3L1-204ENST00000409357 RIMBP3CA6NJZ7 1639 aa16.33■□□□□ 0.21
NIF3L1-204ENST00000409357 RIMBP3BA6NNM3 1639 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms