RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.89
PRAME-202ENST00000398743 CTTNBP2Q8WZ74 1663 aa20.58■□□□□ 0.89
PRAME-202ENST00000398743 LRRC9Q6ZRR7 1453 aa20.58■□□□□ 0.88
PRAME-202ENST00000398743 PCF11O94913 1555 aaKnown RBP20.57■□□□□ 0.88
PRAME-202ENST00000398743 CLSPNQ9HAW4 1339 aa20.57■□□□□ 0.88
PRAME-202ENST00000398743 TDRD9Q8NDG6 1382 aaKnown RBP20.56■□□□□ 0.88
PRAME-202ENST00000398743 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
PRAME-202ENST00000398743 ZNF316A6NFI3 1004 aaPredicted RBP20.56■□□□□ 0.88
PRAME-202ENST00000398743 P3H3Q8IVL6 736 aa20.55■□□□□ 0.88
PRAME-202ENST00000398743 FHOD3Q2V2M9 1422 aa20.55■□□□□ 0.88
PRAME-202ENST00000398743 CFAP43Q8NDM7 1665 aa20.54■□□□□ 0.88
PRAME-202ENST00000398743 DHX57Q6P158 1386 aaKnown RBP20.54■□□□□ 0.88
PRAME-202ENST00000398743 FYCO1Q9BQS8 1478 aa20.52■□□□□ 0.88
PRAME-202ENST00000398743 AQRO60306 1485 aaKnown RBP eCLIP20.51■□□□□ 0.872e-41■■■■■ 46.3
PRAME-202ENST00000398743 CASKIN1Q8WXD9 1431 aa20.49■□□□□ 0.87
PRAME-202ENST00000398743 TARBP1Q13395 1621 aaKnown RBP20.48■□□□□ 0.87
PRAME-202ENST00000398743 FMN1Q68DA7 1419 aa20.47■□□□□ 0.87
PRAME-202ENST00000398743 PHLDB1Q86UU1 1377 aa20.45■□□□□ 0.87
PRAME-202ENST00000398743 ATP1B4Q9UN42 357 aaPredicted RBP20.45■□□□□ 0.86
PRAME-202ENST00000398743 ITGAEP38570 1179 aa20.44■□□□□ 0.86
PRAME-202ENST00000398743 SAMD9Q5K651 1589 aa20.42■□□□□ 0.86
PRAME-202ENST00000398743 MRC2Q9UBG0 1479 aa20.41■□□□□ 0.86
PRAME-202ENST00000398743 SNAPC4Q5SXM2 1469 aa20.4■□□□□ 0.86
PRAME-202ENST00000398743 RAB3GAP2Q9H2M9 1393 aa20.36■□□□□ 0.85
PRAME-202ENST00000398743 PBRM1Q86U86 1689 aa20.35■□□□□ 0.85
PRAME-202ENST00000398743 FAM50AQ14320 339 aaKnown RBP20.34■□□□□ 0.85
PRAME-202ENST00000398743 SETD5Q9C0A6 1442 aa20.32■□□□□ 0.84
PRAME-202ENST00000398743 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.31■□□□□ 0.843e-13■■■■■ 30.1
PRAME-202ENST00000398743 THOC2Q8NI27 1593 aaKnown RBP20.3■□□□□ 0.84
PRAME-202ENST00000398743 ADAMTS12P58397 1594 aa20.3■□□□□ 0.84
PRAME-202ENST00000398743 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
PRAME-202ENST00000398743 MTUS2Q5JR59 1369 aa20.28■□□□□ 0.84
PRAME-202ENST00000398743 IFT140Q96RY7 1462 aa20.26■□□□□ 0.83
PRAME-202ENST00000398743 WDR62O43379 1518 aa20.26■□□□□ 0.83
PRAME-202ENST00000398743 IQGAP2Q13576 1575 aa20.24■□□□□ 0.83
PRAME-202ENST00000398743 FGD6Q6ZV73 1430 aa20.24■□□□□ 0.83
PRAME-202ENST00000398743 MAPKBP1O60336 1514 aa20.24■□□□□ 0.83
PRAME-202ENST00000398743 LRRIQ1Q96JM4 1722 aa20.23■□□□□ 0.83
PRAME-202ENST00000398743 SCAF1Q9H7N4 1312 aaKnown RBP20.22■□□□□ 0.83
PRAME-202ENST00000398743 ACIN1Q9UKV3 1341 aaKnown RBP20.22■□□□□ 0.83
PRAME-202ENST00000398743 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
PRAME-202ENST00000398743 EHBP1L1Q8N3D4 1523 aa20.2■□□□□ 0.82
PRAME-202ENST00000398743 CCDC18Q5T9S5 1454 aa20.19■□□□□ 0.82
PRAME-202ENST00000398743 ZNF608Q9ULD9 1512 aaPredicted RBP20.19■□□□□ 0.82
PRAME-202ENST00000398743 NCOA2Q15596 1464 aa20.18■□□□□ 0.82
PRAME-202ENST00000398743 NEUROD1Q13562 356 aa20.17■□□□□ 0.82
PRAME-202ENST00000398743 SUPT6HQ7KZ85 1726 aaKnown RBP20.17■□□□□ 0.82
PRAME-202ENST00000398743 HECW1Q76N89 1606 aa20.16■□□□□ 0.82
PRAME-202ENST00000398743 MYOM3Q5VTT5 1437 aa20.15■□□□□ 0.82
PRAME-202ENST00000398743 MIER1Q8N108 512 aa20.15■□□□□ 0.82
PRAME-202ENST00000398743 UGGT2Q9NYU1 1516 aa20.13■□□□□ 0.81
PRAME-202ENST00000398743 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
PRAME-202ENST00000398743 ARHGEF11O15085 1522 aa20.1■□□□□ 0.81
PRAME-202ENST00000398743 MAGI3Q5TCQ9 1506 aa20.1■□□□□ 0.81
PRAME-202ENST00000398743 EIF4G3O43432 1585 aaKnown RBP20.1■□□□□ 0.81
PRAME-202ENST00000398743 EPRSP07814 1512 aaKnown RBP20.09■□□□□ 0.81
PRAME-202ENST00000398743 KIAA0586Q9BVV6 1533 aa20.08■□□□□ 0.81
PRAME-202ENST00000398743 HFM1A2PYH4 1435 aa20.07■□□□□ 0.8
PRAME-202ENST00000398743 PTPRKQ15262 1439 aa20.06■□□□□ 0.8
PRAME-202ENST00000398743 GRIN2AQ12879 1464 aa20.06■□□□□ 0.8
PRAME-202ENST00000398743 PTPN23Q9H3S7 1636 aa20.05■□□□□ 0.8
PRAME-202ENST00000398743 KIAA0556O60303 1618 aa20.03■□□□□ 0.8
PRAME-202ENST00000398743 TIMELESSQ9UNS1 1208 aa20.02■□□□□ 0.8
PRAME-202ENST00000398743 CDK13Q14004 1512 aaKnown RBP20.02■□□□□ 0.79
PRAME-202ENST00000398743 DISP1Q96F81 1524 aa20.02■□□□□ 0.79
PRAME-202ENST00000398743 SIN3AQ96ST3 1273 aa20.01■□□□□ 0.79
PRAME-202ENST00000398743 MAGI1Q96QZ7 1491 aaPredicted RBP20.01■□□□□ 0.79
PRAME-202ENST00000398743 TCOF1Q13428 1488 aaKnown RBP20.01■□□□□ 0.79
PRAME-202ENST00000398743 YTHDC1Q96MU7 727 aaKnown RBP20■□□□□ 0.79
PRAME-202ENST00000398743 NAIPQ13075 1403 aa19.99■□□□□ 0.79
PRAME-202ENST00000398743 UACAQ9BZF9 1416 aa19.99■□□□□ 0.79
PRAME-202ENST00000398743 MIA2Q96PC5 1412 aa19.96■□□□□ 0.79
PRAME-202ENST00000398743 SYNJ2O15056 1496 aa19.95■□□□□ 0.78
PRAME-202ENST00000398743 CHMP7Q8WUX9 453 aaPredicted RBP19.93■□□□□ 0.78
PRAME-202ENST00000398743 GTF3C3Q9Y5Q9 886 aa19.93■□□□□ 0.78
PRAME-202ENST00000398743 ARID3CA6NKF2 412 aa19.92■□□□□ 0.78
PRAME-202ENST00000398743 RAPGEF6Q8TEU7 1601 aa19.92■□□□□ 0.78
PRAME-202ENST00000398743 NUP153P49790 1475 aaKnown RBP19.91■□□□□ 0.78
PRAME-202ENST00000398743 CEP170Q5SW79 1584 aa19.91■□□□□ 0.78
PRAME-202ENST00000398743 AKNAQ7Z591 1439 aa19.9■□□□□ 0.78
PRAME-202ENST00000398743 GCC2Q8IWJ2 1684 aa19.88■□□□□ 0.77
PRAME-202ENST00000398743 PPP1R15AO75807 674 aaPredicted RBP19.87■□□□□ 0.77
PRAME-202ENST00000398743 TONSLQ96HA7 1378 aa19.86■□□□□ 0.77
PRAME-202ENST00000398743 CDK11AQ9UQ88 783 aaPredicted RBP19.86■□□□□ 0.77
PRAME-202ENST00000398743 RRP7BPQ9NSQ0 103 aa19.85■□□□□ 0.77
PRAME-202ENST00000398743 CHIC2Q9UKJ5 165 aa19.85■□□□□ 0.77
PRAME-202ENST00000398743 NUP160Q12769 1436 aa19.85■□□□□ 0.77
PRAME-202ENST00000398743 FBLN2P98095 1184 aa19.84■□□□□ 0.77
PRAME-202ENST00000398743 CARMIL2Q6F5E8 1435 aa19.82■□□□□ 0.76
PRAME-202ENST00000398743 PLB1Q6P1J6 1458 aa19.79■□□□□ 0.76
PRAME-202ENST00000398743 DAPK1P53355 1430 aa19.78■□□□□ 0.76
PRAME-202ENST00000398743 TROQ12816 1431 aaPredicted RBP19.78■□□□□ 0.76
PRAME-202ENST00000398743 JPH4Q96JJ6 628 aa19.78■□□□□ 0.76
PRAME-202ENST00000398743 ROCK1Q13464 1354 aa19.76■□□□□ 0.75
PRAME-202ENST00000398743 DNMT1P26358 1616 aaKnown RBP19.76■□□□□ 0.75
PRAME-202ENST00000398743 KDM6BO15054 1643 aa19.75■□□□□ 0.75
PRAME-202ENST00000398743 PRG4Q92954 1404 aaPredicted RBP19.75■□□□□ 0.75
PRAME-202ENST00000398743 TRIM52Q96A61 297 aa19.74■□□□□ 0.75
PRAME-202ENST00000398743 ABCC5O15440 1437 aa19.74■□□□□ 0.75
PRAME-202ENST00000398743 DENND4BO75064 1496 aaPredicted RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms