RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
NEDD8-202ENST00000396828 IGF1RP08069 1367 aa18.13■□□□□ 0.49
NEDD8-202ENST00000396828 KIF13AQ9H1H9 1805 aa18.07■□□□□ 0.48
NEDD8-202ENST00000396828 KIF27Q86VH2 1401 aa18.06■□□□□ 0.48
NEDD8-202ENST00000396828 KIAA0586Q9BVV6 1533 aa18.03■□□□□ 0.48
NEDD8-202ENST00000396828 CUL7Q14999 1698 aa18.02■□□□□ 0.47
NEDD8-202ENST00000396828 ADCY10Q96PN6 1610 aa18■□□□□ 0.47
NEDD8-202ENST00000396828 CARMIL1Q5VZK9 1371 aa17.97■□□□□ 0.47
NEDD8-202ENST00000396828 FAM69CQ0P6D2 419 aa17.94■□□□□ 0.46
NEDD8-202ENST00000396828 ABCC10Q5T3U5 1492 aa17.94■□□□□ 0.46
NEDD8-202ENST00000396828 MAPKBP1O60336 1514 aa17.93■□□□□ 0.46
NEDD8-202ENST00000396828 NPM1P06748 294 aaKnown RBP eCLIP17.92■□□□□ 0.46
NEDD8-202ENST00000396828 TTBK1Q5TCY1 1321 aaPredicted RBP17.92■□□□□ 0.46
NEDD8-202ENST00000396828 DIP2BQ9P265 1576 aa17.91■□□□□ 0.46
NEDD8-202ENST00000396828 PTPRGP23470 1445 aa17.88■□□□□ 0.45
NEDD8-202ENST00000396828 IQGAP2Q13576 1575 aa17.85■□□□□ 0.45
NEDD8-202ENST00000396828 TNIKQ9UKE5 1360 aa17.82■□□□□ 0.44
NEDD8-202ENST00000396828 DISP1Q96F81 1524 aa17.82■□□□□ 0.44
NEDD8-202ENST00000396828 TSPOAP1O95153 1857 aa17.82■□□□□ 0.44
NEDD8-202ENST00000396828 CARMIL2Q6F5E8 1435 aa17.81■□□□□ 0.44
NEDD8-202ENST00000396828 RAPGEF2Q9Y4G8 1499 aa17.79■□□□□ 0.44
NEDD8-202ENST00000396828 ABCC2Q92887 1545 aa17.78■□□□□ 0.44
NEDD8-202ENST00000396828 ASXL2Q76L83 1435 aa17.74■□□□□ 0.43
NEDD8-202ENST00000396828 UGGT2Q9NYU1 1516 aa17.74■□□□□ 0.43
NEDD8-202ENST00000396828 UHRF1BP1LA0JNW5 1464 aa17.74■□□□□ 0.43
NEDD8-202ENST00000396828 UACAQ9BZF9 1416 aa17.73■□□□□ 0.43
NEDD8-202ENST00000396828 KDM6BO15054 1643 aa17.73■□□□□ 0.43
NEDD8-202ENST00000396828 KIAA0556O60303 1618 aa17.71■□□□□ 0.43
NEDD8-202ENST00000396828 PPRC1Q5VV67 1664 aaKnown RBP17.7■□□□□ 0.42
NEDD8-202ENST00000396828 PLB1Q6P1J6 1458 aa17.69■□□□□ 0.42
NEDD8-202ENST00000396828 KDM5BQ9UGL1 1544 aa17.67■□□□□ 0.42
NEDD8-202ENST00000396828 GLI2P10070 1586 aa17.67■□□□□ 0.42
NEDD8-202ENST00000396828 ZCCHC11Q5TAX3 1644 aaKnown RBP17.66■□□□□ 0.42
NEDD8-202ENST00000396828 KDM4FA0A1W2PPD8 638 aa17.66■□□□□ 0.42
NEDD8-202ENST00000396828 CTTNBP2Q8WZ74 1663 aa17.65■□□□□ 0.42
NEDD8-202ENST00000396828 EPRSP07814 1512 aaKnown RBP17.64■□□□□ 0.41
NEDD8-202ENST00000396828 PRXQ9BXM0 1461 aa17.63■□□□□ 0.41
NEDD8-202ENST00000396828 COL17A1Q9UMD9 1497 aaPredicted RBP17.62■□□□□ 0.41
NEDD8-202ENST00000396828 MAP3K4Q9Y6R4 1608 aa17.6■□□□□ 0.41
NEDD8-202ENST00000396828 ABCA8O94911 1581 aa17.56■□□□□ 0.4
NEDD8-202ENST00000396828 WDR7Q9Y4E6 1490 aa17.55■□□□□ 0.4
NEDD8-202ENST00000396828 GOLGA3Q08378 1498 aa17.54■□□□□ 0.4
NEDD8-202ENST00000396828 P3H3Q8IVL6 736 aa17.52■□□□□ 0.4
NEDD8-202ENST00000396828 KCNH8Q96L42 1107 aa17.5■□□□□ 0.39
NEDD8-202ENST00000396828 ARID3CA6NKF2 412 aa17.49■□□□□ 0.39
NEDD8-202ENST00000396828 CSRNP3Q8WYN3 585 aa17.48■□□□□ 0.39
NEDD8-202ENST00000396828 TEX14Q8IWB6 1497 aa17.48■□□□□ 0.39
NEDD8-202ENST00000396828 ADGRL1O94910 1474 aa17.45■□□□□ 0.38
NEDD8-202ENST00000396828 CD109Q6YHK3 1445 aa17.45■□□□□ 0.38
NEDD8-202ENST00000396828 ATP10BO94823 1461 aa17.44■□□□□ 0.38
NEDD8-202ENST00000396828 CFAP43Q8NDM7 1665 aa17.43■□□□□ 0.38
NEDD8-202ENST00000396828 MAGI3Q5TCQ9 1506 aa17.42■□□□□ 0.38
NEDD8-202ENST00000396828 SAMD9Q5K651 1589 aa17.42■□□□□ 0.38
NEDD8-202ENST00000396828 RANGAP1P46060 587 aaPredicted RBP17.39■□□□□ 0.37
NEDD8-202ENST00000396828 FAM9AQ8IZU1 332 aaPredicted RBP17.38■□□□□ 0.37
NEDD8-202ENST00000396828 RAPGEF6Q8TEU7 1601 aa17.35■□□□□ 0.37
NEDD8-202ENST00000396828 FHOD3Q2V2M9 1422 aa17.33■□□□□ 0.36
NEDD8-202ENST00000396828 NUP153P49790 1475 aaKnown RBP17.31■□□□□ 0.36
NEDD8-202ENST00000396828 ABCA9Q8IUA7 1624 aa17.31■□□□□ 0.36
NEDD8-202ENST00000396828 EEA1Q15075 1411 aa17.3■□□□□ 0.36
NEDD8-202ENST00000396828 ARAP3Q8WWN8 1544 aa17.3■□□□□ 0.36
NEDD8-202ENST00000396828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.29■□□□□ 0.36
NEDD8-202ENST00000396828 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
NEDD8-202ENST00000396828 KIF21BO75037 1637 aa17.29■□□□□ 0.36
NEDD8-202ENST00000396828 RAPGEF3O95398 923 aa17.25■□□□□ 0.35
NEDD8-202ENST00000396828 EHMT2Q96KQ7 1210 aa17.25■□□□□ 0.35
NEDD8-202ENST00000396828 HECW2Q9P2P5 1572 aa17.23■□□□□ 0.35
NEDD8-202ENST00000396828 FRMPD1Q5SYB0 1578 aa17.2■□□□□ 0.34
NEDD8-202ENST00000396828 NEO1Q92859 1461 aa17.19■□□□□ 0.34
NEDD8-202ENST00000396828 PHLDB1Q86UU1 1377 aa17.18■□□□□ 0.34
NEDD8-202ENST00000396828 EFCAB5A4FU69 1503 aa17.18■□□□□ 0.34
NEDD8-202ENST00000396828 PLEKHD1A6NEE1 506 aa17.17■□□□□ 0.34
NEDD8-202ENST00000396828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.16■□□□□ 0.34
NEDD8-202ENST00000396828 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
NEDD8-202ENST00000396828 TTC37Q6PGP7 1564 aa17.15■□□□□ 0.34
NEDD8-202ENST00000396828 ILDR1Q86SU0 546 aaPredicted RBP17.14■□□□□ 0.33
NEDD8-202ENST00000396828 ADAMTSL3P82987 1691 aa17.13■□□□□ 0.33
NEDD8-202ENST00000396828 UBTFP17480 764 aaKnown RBP17.13■□□□□ 0.33
NEDD8-202ENST00000396828 AKNAQ7Z591 1439 aa17.12■□□□□ 0.33
NEDD8-202ENST00000396828 RICTORQ6R327 1708 aa17.11■□□□□ 0.33
NEDD8-202ENST00000396828 FANCAO15360 1455 aa17.11■□□□□ 0.33
NEDD8-202ENST00000396828 ARHGAP35Q9NRY4 1499 aa17.11■□□□□ 0.33
NEDD8-202ENST00000396828 PTPRMP28827 1452 aa17.09■□□□□ 0.33
NEDD8-202ENST00000396828 BCORL1Q5H9F3 1711 aa17.08■□□□□ 0.32
NEDD8-202ENST00000396828 DENND4BO75064 1496 aaPredicted RBP17.08■□□□□ 0.32
NEDD8-202ENST00000396828 ATP1B4Q9UN42 357 aaPredicted RBP17.08■□□□□ 0.32
NEDD8-202ENST00000396828 SIGLEC1Q9BZZ2 1709 aa17.07■□□□□ 0.32
NEDD8-202ENST00000396828 MADDQ8WXG6 1647 aa17.07■□□□□ 0.32
NEDD8-202ENST00000396828 ARID4BQ4LE39 1312 aaPredicted RBP17.06■□□□□ 0.32
NEDD8-202ENST00000396828 ARHGEF40Q8TER5 1519 aa17.06■□□□□ 0.32
NEDD8-202ENST00000396828 YEATS2Q9ULM3 1422 aa17.04■□□□□ 0.32
NEDD8-202ENST00000396828 CFAP74Q9C0B2 1584 aa17.03■□□□□ 0.32
NEDD8-202ENST00000396828 LRRIQ1Q96JM4 1722 aa17.03■□□□□ 0.32
NEDD8-202ENST00000396828 PLCH2O75038 1416 aa17.03■□□□□ 0.32
NEDD8-202ENST00000396828 FMN1Q68DA7 1419 aa17.03■□□□□ 0.32
NEDD8-202ENST00000396828 KIF14Q15058 1648 aa17.02■□□□□ 0.31
NEDD8-202ENST00000396828 HECW1Q76N89 1606 aa17.02■□□□□ 0.31
NEDD8-202ENST00000396828 ZMYM4Q5VZL5 1548 aa17.01■□□□□ 0.31
NEDD8-202ENST00000396828 SCAPERQ9BY12 1400 aa17■□□□□ 0.31
NEDD8-202ENST00000396828 RIMS1Q86UR5 1692 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms