RNA–Protein interactions for RNA: ENST00000396081.5

HERPUD2-202, Transcript of HERPUD family member 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERPUD2, Length 3,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-202ENST00000396081 ATP1B4Q9UN42 357 aaPredicted RBP25.6■■□□□ 1.69
HERPUD2-202ENST00000396081 SETD5Q9C0A6 1442 aa25.58■■□□□ 1.69
HERPUD2-202ENST00000396081 IRX6P78412 446 aaPredicted RBP25.55■■□□□ 1.68
HERPUD2-202ENST00000396081 BICRAQ9NZM4 1560 aa25.54■■□□□ 1.68
HERPUD2-202ENST00000396081 ERICH6Q7L0X2 663 aa25.54■■□□□ 1.68
HERPUD2-202ENST00000396081 ARHGAP35Q9NRY4 1499 aa25.54■■□□□ 1.68
HERPUD2-202ENST00000396081 CCER2I3L3R5 266 aa25.52■■□□□ 1.68
HERPUD2-202ENST00000396081 MSH5O43196 834 aa25.52■■□□□ 1.68
HERPUD2-202ENST00000396081 KIF27Q86VH2 1401 aa25.52■■□□□ 1.68
HERPUD2-202ENST00000396081 HNRNPUQ00839 825 aaKnown RBP eCLIP25.45■■□□□ 1.66
HERPUD2-202ENST00000396081 P3H3Q8IVL6 736 aa25.45■■□□□ 1.66
HERPUD2-202ENST00000396081 CDK11AQ9UQ88 783 aaPredicted RBP25.44■■□□□ 1.66
HERPUD2-202ENST00000396081 PHLDB1Q86UU1 1377 aa25.41■■□□□ 1.66
HERPUD2-202ENST00000396081 BIVM-ERCC5R4GMW8 1640 aa25.4■■□□□ 1.66
HERPUD2-202ENST00000396081 TIMELESSQ9UNS1 1208 aa25.36■■□□□ 1.65
HERPUD2-202ENST00000396081 TONSLQ96HA7 1378 aa25.34■■□□□ 1.65
HERPUD2-202ENST00000396081 CUX1P39880 1505 aa25.34■■□□□ 1.65
HERPUD2-202ENST00000396081 TIAM1Q13009 1591 aa25.31■■□□□ 1.64
HERPUD2-202ENST00000396081 LRRC9Q6ZRR7 1453 aa25.3■■□□□ 1.64
HERPUD2-202ENST00000396081 FANCIQ9NVI1 1328 aa25.27■■□□□ 1.64
HERPUD2-202ENST00000396081 IGF1RP08069 1367 aa25.19■■□□□ 1.62
HERPUD2-202ENST00000396081 CARMIL1Q5VZK9 1371 aa25.17■■□□□ 1.62
HERPUD2-202ENST00000396081 MAP3K1Q13233 1512 aa25.13■■□□□ 1.61
HERPUD2-202ENST00000396081 B4GALNT3Q6L9W6 998 aa25.12■■□□□ 1.61
HERPUD2-202ENST00000396081 PPP4R2Q9NY27 417 aa25.12■■□□□ 1.61
HERPUD2-202ENST00000396081 FHAD1B1AJZ9 1412 aa25.12■■□□□ 1.61
HERPUD2-202ENST00000396081 FAM9BQ8IZU0 186 aa25.1■■□□□ 1.61
HERPUD2-202ENST00000396081 DEKP35659 375 aaKnown RBP25.05■■□□□ 1.6
HERPUD2-202ENST00000396081 CCDC184Q52MB2 194 aa25.05■■□□□ 1.6
HERPUD2-202ENST00000396081 FHOD3Q2V2M9 1422 aa25.05■■□□□ 1.6
HERPUD2-202ENST00000396081 HSPA5P11021 654 aaKnown RBP25.04■■□□□ 1.6
HERPUD2-202ENST00000396081 NBR1Q14596 966 aa25.03■■□□□ 1.6
HERPUD2-202ENST00000396081 PRKCSHP14314 528 aaPredicted RBP25.02■■□□□ 1.6
HERPUD2-202ENST00000396081 CCDC18Q5T9S5 1454 aa25.02■■□□□ 1.6
HERPUD2-202ENST00000396081 WASHC2AQ641Q2 1341 aa25.02■■□□□ 1.6
HERPUD2-202ENST00000396081 PCF11O94913 1555 aaKnown RBP25.01■■□□□ 1.59
HERPUD2-202ENST00000396081 CNGB1Q14028 1251 aaPredicted RBP24.97■■□□□ 1.59
HERPUD2-202ENST00000396081 MRS2Q9HD23 443 aa24.97■■□□□ 1.59
HERPUD2-202ENST00000396081 CFTRP13569 1480 aa24.97■■□□□ 1.59
HERPUD2-202ENST00000396081 ERICH6BQ5W0A0 696 aa24.97■■□□□ 1.59
HERPUD2-202ENST00000396081 MYT1LQ9UL68 1186 aa24.94■■□□□ 1.58
HERPUD2-202ENST00000396081 UACAQ9BZF9 1416 aa24.94■■□□□ 1.58
HERPUD2-202ENST00000396081 EIF4G2P78344 907 aaKnown RBP eCLIP24.94■■□□□ 1.58
HERPUD2-202ENST00000396081 MTUS2Q5JR59 1369 aa24.93■■□□□ 1.58
HERPUD2-202ENST00000396081 FGD6Q6ZV73 1430 aa24.93■■□□□ 1.58
HERPUD2-202ENST00000396081 RRP7BPQ9NSQ0 103 aa24.92■■□□□ 1.58
HERPUD2-202ENST00000396081 CHIC2Q9UKJ5 165 aa24.92■■□□□ 1.58
HERPUD2-202ENST00000396081 NOP58Q9Y2X3 529 aaKnown RBP24.91■■□□□ 1.58
HERPUD2-202ENST00000396081 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
HERPUD2-202ENST00000396081 PTPRKQ15262 1439 aa24.9■■□□□ 1.58
HERPUD2-202ENST00000396081 CFAP43Q8NDM7 1665 aa24.89■■□□□ 1.57
HERPUD2-202ENST00000396081 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.87■■□□□ 1.57
HERPUD2-202ENST00000396081 PAK3O75914 559 aaPredicted RBP24.87■■□□□ 1.57
HERPUD2-202ENST00000396081 FGD5Q6ZNL6 1462 aa24.86■■□□□ 1.57
HERPUD2-202ENST00000396081 PRKRIP1Q9H875 184 aaPredicted RBP24.85■■□□□ 1.57
HERPUD2-202ENST00000396081 HFM1A2PYH4 1435 aa24.85■■□□□ 1.57
HERPUD2-202ENST00000396081 AQRO60306 1485 aaKnown RBP eCLIP24.85■■□□□ 1.57
HERPUD2-202ENST00000396081 SENP3-EIF4A1A0A087X0R7 540 aa24.84■■□□□ 1.57
HERPUD2-202ENST00000396081 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
HERPUD2-202ENST00000396081 FYCO1Q9BQS8 1478 aa24.82■■□□□ 1.56
HERPUD2-202ENST00000396081 C11orf95C9JLR9 678 aaPredicted RBP24.82■■□□□ 1.56
HERPUD2-202ENST00000396081 CASKIN1Q8WXD9 1431 aa24.82■■□□□ 1.56
HERPUD2-202ENST00000396081 NAIPQ13075 1403 aa24.8■■□□□ 1.56
HERPUD2-202ENST00000396081 ZBED9Q6R2W3 1325 aa24.79■■□□□ 1.56
HERPUD2-202ENST00000396081 CNTLNQ9NXG0 1405 aa24.79■■□□□ 1.56
HERPUD2-202ENST00000396081 FOXD1Q16676 465 aa24.79■■□□□ 1.56
HERPUD2-202ENST00000396081 PTPN23Q9H3S7 1636 aa24.78■■□□□ 1.56
HERPUD2-202ENST00000396081 FMN1Q68DA7 1419 aa24.77■■□□□ 1.56
HERPUD2-202ENST00000396081 POLR3GLQ9BT43 218 aa24.77■■□□□ 1.56
HERPUD2-202ENST00000396081 L3MBTL2Q969R5 705 aa24.76■■□□□ 1.55
HERPUD2-202ENST00000396081 CCDC136Q96JN2 1154 aa24.75■■□□□ 1.55
HERPUD2-202ENST00000396081 ANP32AP39687 249 aaKnown RBP24.74■■□□□ 1.55
HERPUD2-202ENST00000396081 RTL5Q5HYW3 569 aaPredicted RBP24.72■■□□□ 1.55
HERPUD2-202ENST00000396081 KDM5BQ9UGL1 1544 aa24.72■■□□□ 1.55
HERPUD2-202ENST00000396081 CCDC7Q96M83 1385 aa24.71■■□□□ 1.55
HERPUD2-202ENST00000396081 CADPSQ9ULU8 1353 aa24.68■■□□□ 1.54
HERPUD2-202ENST00000396081 AKNAQ7Z591 1439 aa24.67■■□□□ 1.54
HERPUD2-202ENST00000396081 ZBTB47Q9UFB7 747 aaPredicted RBP24.67■■□□□ 1.54
HERPUD2-202ENST00000396081 NCOA2Q15596 1464 aa24.67■■□□□ 1.54
HERPUD2-202ENST00000396081 MYOM3Q5VTT5 1437 aa24.66■■□□□ 1.54
HERPUD2-202ENST00000396081 MPHOSPH9Q99550 1183 aa24.66■■□□□ 1.54
HERPUD2-202ENST00000396081 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
HERPUD2-202ENST00000396081 IPO9Q96P70 1041 aaKnown RBP24.63■■□□□ 1.53
HERPUD2-202ENST00000396081 EFCAB5A4FU69 1503 aa24.62■■□□□ 1.53
HERPUD2-202ENST00000396081 ARID3CA6NKF2 412 aa24.61■■□□□ 1.53
HERPUD2-202ENST00000396081 NPM2Q86SE8 214 aaKnown RBP24.61■■□□□ 1.53
HERPUD2-202ENST00000396081 KIF7Q2M1P5 1343 aa24.61■■□□□ 1.53
HERPUD2-202ENST00000396081 NBPF8Q3BBV2 869 aa24.61■■□□□ 1.53
HERPUD2-202ENST00000396081 NCOA1Q15788 1441 aa24.6■■□□□ 1.53
HERPUD2-202ENST00000396081 NUDCQ9Y266 331 aa24.58■■□□□ 1.52
HERPUD2-202ENST00000396081 ZNF326Q5BKZ1 582 aaKnown RBP24.55■■□□□ 1.52
HERPUD2-202ENST00000396081 SNAPC4Q5SXM2 1469 aa24.55■■□□□ 1.52
HERPUD2-202ENST00000396081 ANO8Q9HCE9 1232 aaPredicted RBP24.51■■□□□ 1.51
HERPUD2-202ENST00000396081 DENND4BO75064 1496 aaPredicted RBP24.51■■□□□ 1.51
HERPUD2-202ENST00000396081 SMG6Q86US8 1419 aaKnown RBP24.5■■□□□ 1.51
HERPUD2-202ENST00000396081 RTN4Q9NQC3 1192 aaKnown RBP24.49■■□□□ 1.51
HERPUD2-202ENST00000396081 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
HERPUD2-202ENST00000396081 LAS1LQ9Y4W2 734 aaKnown RBP24.46■■□□□ 1.51
HERPUD2-202ENST00000396081 FANCD2Q9BXW9 1451 aa24.46■■□□□ 1.51
HERPUD2-202ENST00000396081 PRDM2Q13029 1718 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms