RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DNMBPQ6XZF7 1577 aa25.79■■□□□ 1.72
SQSTM1-202ENST00000389805 RRBP1Q9P2E9 1410 aaKnown RBP25.77■■□□□ 1.72
SQSTM1-202ENST00000389805 CCNB3Q8WWL7 1395 aa25.75■■□□□ 1.71
SQSTM1-202ENST00000389805 DHX57Q6P158 1386 aaKnown RBP25.74■■□□□ 1.71
SQSTM1-202ENST00000389805 ABCA10Q8WWZ4 1543 aa25.74■■□□□ 1.71
SQSTM1-202ENST00000389805 TSHZ2Q9NRE2 1034 aa25.69■■□□□ 1.7
SQSTM1-202ENST00000389805 URB2Q14146 1524 aaKnown RBP25.69■■□□□ 1.7
SQSTM1-202ENST00000389805 TDRD9Q8NDG6 1382 aaKnown RBP25.68■■□□□ 1.7
SQSTM1-202ENST00000389805 FHOD3Q2V2M9 1422 aa25.66■■□□□ 1.7
SQSTM1-202ENST00000389805 ANP32EQ9BTT0 268 aa25.65■■□□□ 1.7
SQSTM1-202ENST00000389805 TIAM1Q13009 1591 aa25.65■■□□□ 1.7
SQSTM1-202ENST00000389805 LAMC3Q9Y6N6 1575 aa25.61■■□□□ 1.69
SQSTM1-202ENST00000389805 LRRC9Q6ZRR7 1453 aa25.6■■□□□ 1.69
SQSTM1-202ENST00000389805 PHLDB1Q86UU1 1377 aa25.6■■□□□ 1.69
SQSTM1-202ENST00000389805 BCL11AQ9H165 835 aa25.6■■□□□ 1.69
SQSTM1-202ENST00000389805 FHAD1B1AJZ9 1412 aa25.58■■□□□ 1.68
SQSTM1-202ENST00000389805 FAM50AQ14320 339 aaKnown RBP25.57■■□□□ 1.68
SQSTM1-202ENST00000389805 PCF11O94913 1555 aaKnown RBP25.56■■□□□ 1.68
SQSTM1-202ENST00000389805 CLSPNQ9HAW4 1339 aa25.55■■□□□ 1.68
SQSTM1-202ENST00000389805 PDS5BQ9NTI5 1447 aa25.53■■□□□ 1.68
SQSTM1-202ENST00000389805 MAP3K1Q13233 1512 aa25.53■■□□□ 1.68
SQSTM1-202ENST00000389805 RAB3GAP2Q9H2M9 1393 aa25.51■■□□□ 1.67
SQSTM1-202ENST00000389805 BCANQ96GW7 911 aa25.5■■□□□ 1.67
SQSTM1-202ENST00000389805 CUL7Q14999 1698 aa25.48■■□□□ 1.67
SQSTM1-202ENST00000389805 GAPVD1Q14C86 1478 aa25.48■■□□□ 1.67
SQSTM1-202ENST00000389805 KIF21AQ7Z4S6 1674 aa25.44■■□□□ 1.66
SQSTM1-202ENST00000389805 WDR97A6NE52 1622 aa25.44■■□□□ 1.66
SQSTM1-202ENST00000389805 CASKIN1Q8WXD9 1431 aa25.41■■□□□ 1.66
SQSTM1-202ENST00000389805 EFCAB5A4FU69 1503 aa25.4■■□□□ 1.66
SQSTM1-202ENST00000389805 CTTNBP2Q8WZ74 1663 aa25.4■■□□□ 1.66
SQSTM1-202ENST00000389805 ABCA5Q8WWZ7 1642 aa25.4■■□□□ 1.66
SQSTM1-202ENST00000389805 FYCO1Q9BQS8 1478 aa25.39■■□□□ 1.65
SQSTM1-202ENST00000389805 CFAP43Q8NDM7 1665 aa25.38■■□□□ 1.65
SQSTM1-202ENST00000389805 SETD5Q9C0A6 1442 aa25.37■■□□□ 1.65
SQSTM1-202ENST00000389805 KCNH8Q96L42 1107 aa25.37■■□□□ 1.65
SQSTM1-202ENST00000389805 FMN1Q68DA7 1419 aa25.34■■□□□ 1.65
SQSTM1-202ENST00000389805 AQRO60306 1485 aaKnown RBP eCLIP25.31■■□□□ 1.643e-8■■■■■ 26.9
SQSTM1-202ENST00000389805 SIN3AQ96ST3 1273 aa25.31■■□□□ 1.64
SQSTM1-202ENST00000389805 SNAPC4Q5SXM2 1469 aa25.3■■□□□ 1.64
SQSTM1-202ENST00000389805 MAPKBP1O60336 1514 aa25.3■■□□□ 1.64
SQSTM1-202ENST00000389805 MTUS2Q5JR59 1369 aa25.28■■□□□ 1.64
SQSTM1-202ENST00000389805 TARBP1Q13395 1621 aaKnown RBP25.28■■□□□ 1.64
SQSTM1-202ENST00000389805 FKBP8Q14318 412 aa25.24■■□□□ 1.63
SQSTM1-202ENST00000389805 SAMD9Q5K651 1589 aa25.22■■□□□ 1.63
SQSTM1-202ENST00000389805 ARID3CA6NKF2 412 aa25.2■■□□□ 1.63
SQSTM1-202ENST00000389805 FGD6Q6ZV73 1430 aa25.2■■□□□ 1.62
SQSTM1-202ENST00000389805 LRRIQ1Q96JM4 1722 aa25.17■■□□□ 1.62
SQSTM1-202ENST00000389805 GRIN2BQ13224 1484 aa25.16■■□□□ 1.62
SQSTM1-202ENST00000389805 PTPRKQ15262 1439 aa25.14■■□□□ 1.62
SQSTM1-202ENST00000389805 MRC2Q9UBG0 1479 aa25.13■■□□□ 1.61
SQSTM1-202ENST00000389805 NCOA2Q15596 1464 aa25.12■■□□□ 1.61
SQSTM1-202ENST00000389805 ZNF608Q9ULD9 1512 aaPredicted RBP25.11■■□□□ 1.61
SQSTM1-202ENST00000389805 RBM19Q9Y4C8 960 aaKnown RBP25.11■■□□□ 1.61
SQSTM1-202ENST00000389805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.11■■□□□ 1.611e-6■□□□□ 11.1
SQSTM1-202ENST00000389805 PBRM1Q86U86 1689 aa25.09■■□□□ 1.61
SQSTM1-202ENST00000389805 MAGI3Q5TCQ9 1506 aa25.06■■□□□ 1.6
SQSTM1-202ENST00000389805 MYOM3Q5VTT5 1437 aa25.05■■□□□ 1.6
SQSTM1-202ENST00000389805 HIRIP3Q9BW71 556 aaPredicted RBP25.03■■□□□ 1.6
SQSTM1-202ENST00000389805 CHIC2Q9UKJ5 165 aa25.03■■□□□ 1.6
SQSTM1-202ENST00000389805 ADAMTS12P58397 1594 aa25.02■■□□□ 1.6
SQSTM1-202ENST00000389805 IQGAP2Q13576 1575 aa25.02■■□□□ 1.6
SQSTM1-202ENST00000389805 RRP7BPQ9NSQ0 103 aa24.99■■□□□ 1.59
SQSTM1-202ENST00000389805 CCDC18Q5T9S5 1454 aa24.99■■□□□ 1.59
SQSTM1-202ENST00000389805 DDX10Q13206 875 aaKnown RBP24.98■■□□□ 1.59
SQSTM1-202ENST00000389805 SUPT6HQ7KZ85 1726 aaKnown RBP24.96■■□□□ 1.59
SQSTM1-202ENST00000389805 CDK13Q14004 1512 aaKnown RBP24.96■■□□□ 1.59
SQSTM1-202ENST00000389805 EHBP1L1Q8N3D4 1523 aa24.96■■□□□ 1.59
SQSTM1-202ENST00000389805 NEFLP07196 543 aa24.96■■□□□ 1.59
SQSTM1-202ENST00000389805 HFM1A2PYH4 1435 aa24.96■■□□□ 1.59
SQSTM1-202ENST00000389805 PPP1R15AO75807 674 aaPredicted RBP24.95■■□□□ 1.58
SQSTM1-202ENST00000389805 THOC2Q8NI27 1593 aaKnown RBP24.95■■□□□ 1.58
SQSTM1-202ENST00000389805 NAIPQ13075 1403 aa24.94■■□□□ 1.58
SQSTM1-202ENST00000389805 IFT140Q96RY7 1462 aa24.94■■□□□ 1.58
SQSTM1-202ENST00000389805 TRIM52Q96A61 297 aa24.94■■□□□ 1.58
SQSTM1-202ENST00000389805 EPRSP07814 1512 aaKnown RBP24.94■■□□□ 1.58
SQSTM1-202ENST00000389805 UGGT2Q9NYU1 1516 aa24.94■■□□□ 1.58
SQSTM1-202ENST00000389805 PTPN23Q9H3S7 1636 aa24.91■■□□□ 1.58
SQSTM1-202ENST00000389805 MSH5O43196 834 aa24.89■■□□□ 1.58
SQSTM1-202ENST00000389805 ARHGEF11O15085 1522 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 WDR62O43379 1518 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 UACAQ9BZF9 1416 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 HECW1Q76N89 1606 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 FBLN2P98095 1184 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 TIMELESSQ9UNS1 1208 aa24.88■■□□□ 1.57
SQSTM1-202ENST00000389805 ERCC6Q03468 1493 aa24.86■■□□□ 1.57
SQSTM1-202ENST00000389805 TONSLQ96HA7 1378 aa24.85■■□□□ 1.57
SQSTM1-202ENST00000389805 DISP1Q96F81 1524 aa24.82■■□□□ 1.56
SQSTM1-202ENST00000389805 KIAA0586Q9BVV6 1533 aa24.82■■□□□ 1.56
SQSTM1-202ENST00000389805 CHMP7Q8WUX9 453 aaPredicted RBP24.81■■□□□ 1.56
SQSTM1-202ENST00000389805 GRIN2AQ12879 1464 aa24.79■■□□□ 1.56
SQSTM1-202ENST00000389805 EIF4G3O43432 1585 aaKnown RBP24.79■■□□□ 1.56
SQSTM1-202ENST00000389805 ZNF644Q9H582 1327 aaPredicted RBP24.79■■□□□ 1.56
SQSTM1-202ENST00000389805 TCOF1Q13428 1488 aaKnown RBP24.77■■□□□ 1.56
SQSTM1-202ENST00000389805 KIAA0556O60303 1618 aa24.74■■□□□ 1.55
SQSTM1-202ENST00000389805 FOXD1Q16676 465 aa24.74■■□□□ 1.55
SQSTM1-202ENST00000389805 KDM6BO15054 1643 aa24.73■■□□□ 1.55
SQSTM1-202ENST00000389805 NUP153P49790 1475 aaKnown RBP24.73■■□□□ 1.55
SQSTM1-202ENST00000389805 IRX6P78412 446 aaPredicted RBP24.71■■□□□ 1.55
SQSTM1-202ENST00000389805 ERICH6Q7L0X2 663 aa24.7■■□□□ 1.55
SQSTM1-202ENST00000389805 MIA2Q96PC5 1412 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms