RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NISCHQ9Y2I1 1504 aa36.61■■■■□ 3.45
SQSTM1-202ENST00000389805 SHROOM4Q9ULL8 1493 aa31.28■■■□□ 2.6
SQSTM1-202ENST00000389805 CCDC180Q9P1Z9 1646 aa31.07■■■□□ 2.56
SQSTM1-202ENST00000389805 ZCCHC6Q5VYS8 1495 aaKnown RBP30.89■■■□□ 2.53
SQSTM1-202ENST00000389805 DCAF8L2P0C7V8 631 aa30.73■■■□□ 2.51
SQSTM1-202ENST00000389805 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.48
SQSTM1-202ENST00000389805 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
SQSTM1-202ENST00000389805 HRCP23327 699 aa29.58■■■□□ 2.33
SQSTM1-202ENST00000389805 CHIC1Q5VXU3 224 aa29.52■■■□□ 2.32
SQSTM1-202ENST00000389805 MYO15BQ96JP2 1530 aa29.32■■■□□ 2.28
SQSTM1-202ENST00000389805 SCRIBQ14160 1630 aa29.29■■■□□ 2.28
SQSTM1-202ENST00000389805 ABCC9O60706 1549 aa29.27■■■□□ 2.28
SQSTM1-202ENST00000389805 PPARGC1BQ86YN6 1023 aaKnown RBP29.22■■■□□ 2.27
SQSTM1-202ENST00000389805 PCGF6Q9BYE7 350 aa29.21■■■□□ 2.27
SQSTM1-202ENST00000389805 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
SQSTM1-202ENST00000389805 NACADO15069 1562 aa28.86■■■□□ 2.21
SQSTM1-202ENST00000389805 LOC105371045A0A1W2PR82 267 aa28.76■■■□□ 2.19
SQSTM1-202ENST00000389805 CECR2Q9BXF3 1484 aa28.69■■■□□ 2.18
SQSTM1-202ENST00000389805 RB1CC1Q8TDY2 1594 aa28.58■■■□□ 2.17
SQSTM1-202ENST00000389805 MROH2BQ7Z745 1585 aa28.51■■■□□ 2.16
SQSTM1-202ENST00000389805 TRIM41Q8WV44 630 aa28.42■■■□□ 2.14
SQSTM1-202ENST00000389805 WIZO95785 1651 aa28.33■■■□□ 2.13
SQSTM1-202ENST00000389805 FAM9AQ8IZU1 332 aaPredicted RBP28.3■■■□□ 2.12
SQSTM1-202ENST00000389805 PELP1Q8IZL8 1130 aaKnown RBP28.23■■■□□ 2.11
SQSTM1-202ENST00000389805 EHMT2Q96KQ7 1210 aa28.16■■■□□ 2.1
SQSTM1-202ENST00000389805 TRIM26Q12899 539 aaPredicted RBP28.1■■■□□ 2.09
SQSTM1-202ENST00000389805 BAZ1AQ9NRL2 1556 aaPredicted RBP28.09■■■□□ 2.09
SQSTM1-202ENST00000389805 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.082e-7■□□□□ 9.6
SQSTM1-202ENST00000389805 UNC13AQ9UPW8 1703 aa28.04■■■□□ 2.08
SQSTM1-202ENST00000389805 SCAF1Q9H7N4 1312 aaKnown RBP28.03■■■□□ 2.08
SQSTM1-202ENST00000389805 SMARCA4P51532 1647 aa27.9■■■□□ 2.06
SQSTM1-202ENST00000389805 TOP2AP11388 1531 aaKnown RBP27.79■■■□□ 2.04
SQSTM1-202ENST00000389805 CCDC88BA6NC98 1476 aa27.78■■■□□ 2.04
SQSTM1-202ENST00000389805 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.03
SQSTM1-202ENST00000389805 ZEB1P37275 1124 aaPredicted RBP27.73■■■□□ 2.03
SQSTM1-202ENST00000389805 EIF4G1Q04637 1599 aaKnown RBP27.73■■■□□ 2.03
SQSTM1-202ENST00000389805 SMARCA2P51531 1590 aa27.68■■■□□ 2.02
SQSTM1-202ENST00000389805 ABCC8Q09428 1581 aa27.66■■■□□ 2.02
SQSTM1-202ENST00000389805 SOGA1O94964 1423 aa27.39■■□□□ 1.98
SQSTM1-202ENST00000389805 NEUROD1Q13562 356 aa27.33■■□□□ 1.96
SQSTM1-202ENST00000389805 PEG3Q9GZU2 1588 aa27.31■■□□□ 1.96
SQSTM1-202ENST00000389805 ACIN1Q9UKV3 1341 aaKnown RBP27.3■■□□□ 1.96
SQSTM1-202ENST00000389805 ATAD2BQ9ULI0 1458 aa27.3■■□□□ 1.96
SQSTM1-202ENST00000389805 RUSC2Q8N2Y8 1516 aa27.29■■□□□ 1.96
SQSTM1-202ENST00000389805 BAZ1BQ9UIG0 1483 aaKnown RBP27.21■■□□□ 1.95
SQSTM1-202ENST00000389805 CSRNP3Q8WYN3 585 aa27.2■■□□□ 1.95
SQSTM1-202ENST00000389805 GTF3C3Q9Y5Q9 886 aa27.18■■□□□ 1.94
SQSTM1-202ENST00000389805 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.944e-10■■□□□ 11.8
SQSTM1-202ENST00000389805 TTBK1Q5TCY1 1321 aaPredicted RBP27.15■■□□□ 1.94
SQSTM1-202ENST00000389805 UBTFP17480 764 aaKnown RBP27.14■■□□□ 1.93
SQSTM1-202ENST00000389805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.11■■□□□ 1.93
SQSTM1-202ENST00000389805 CEP162Q5TB80 1403 aa27.08■■□□□ 1.93
SQSTM1-202ENST00000389805 SYNJ1O43426 1573 aa27.04■■□□□ 1.92
SQSTM1-202ENST00000389805 TNIKQ9UKE5 1360 aa27.02■■□□□ 1.92
SQSTM1-202ENST00000389805 EEA1Q15075 1411 aa27.01■■□□□ 1.92
SQSTM1-202ENST00000389805 MYT1Q01538 1121 aa27.01■■□□□ 1.91
SQSTM1-202ENST00000389805 CCER1Q8TC90 406 aaPredicted RBP27■■□□□ 1.91
SQSTM1-202ENST00000389805 CENPBP07199 599 aaPredicted RBP26.94■■□□□ 1.9
SQSTM1-202ENST00000389805 DIEXFQ68CQ4 756 aaKnown RBP26.94■■□□□ 1.9
SQSTM1-202ENST00000389805 GOLGA3Q08378 1498 aa26.88■■□□□ 1.89
SQSTM1-202ENST00000389805 RANGAP1P46060 587 aaPredicted RBP26.8■■□□□ 1.88
SQSTM1-202ENST00000389805 NCAPD3P42695 1498 aa26.78■■□□□ 1.88
SQSTM1-202ENST00000389805 CEP164Q9UPV0 1460 aa26.75■■□□□ 1.87
SQSTM1-202ENST00000389805 RAPGEF2Q9Y4G8 1499 aa26.7■■□□□ 1.86
SQSTM1-202ENST00000389805 YTHDC1Q96MU7 727 aaKnown RBP26.69■■□□□ 1.86
SQSTM1-202ENST00000389805 HMGXB3Q12766 1538 aa26.67■■□□□ 1.86
SQSTM1-202ENST00000389805 TOP2BQ02880 1626 aa26.67■■□□□ 1.86
SQSTM1-202ENST00000389805 KIF21BO75037 1637 aa26.66■■□□□ 1.86
SQSTM1-202ENST00000389805 CLIP1P30622 1438 aa26.64■■□□□ 1.85
SQSTM1-202ENST00000389805 CUX1P39880 1505 aa26.54■■□□□ 1.84
SQSTM1-202ENST00000389805 BIVM-ERCC5R4GMW8 1640 aa26.52■■□□□ 1.84
SQSTM1-202ENST00000389805 CFTRP13569 1480 aa26.51■■□□□ 1.83
SQSTM1-202ENST00000389805 VPS8Q8N3P4 1428 aa26.44■■□□□ 1.82
SQSTM1-202ENST00000389805 HNRNPUL2Q1KMD3 747 aaKnown RBP26.43■■□□□ 1.82
SQSTM1-202ENST00000389805 APLP2Q06481 763 aa26.4■■□□□ 1.82
SQSTM1-202ENST00000389805 PRXQ9BXM0 1461 aa26.39■■□□□ 1.82
SQSTM1-202ENST00000389805 ZNF316A6NFI3 1004 aaPredicted RBP26.38■■□□□ 1.81
SQSTM1-202ENST00000389805 KIF27Q86VH2 1401 aa26.34■■□□□ 1.81
SQSTM1-202ENST00000389805 CADPSQ9ULU8 1353 aa26.31■■□□□ 1.8
SQSTM1-202ENST00000389805 MIER1Q8N108 512 aa26.3■■□□□ 1.8
SQSTM1-202ENST00000389805 ERICH3Q5RHP9 1530 aa26.27■■□□□ 1.8
SQSTM1-202ENST00000389805 CC2D2AQ9P2K1 1620 aa26.26■■□□□ 1.79
SQSTM1-202ENST00000389805 ARAP1Q96P48 1450 aa26.21■■□□□ 1.79
SQSTM1-202ENST00000389805 CUX2O14529 1486 aa26.19■■□□□ 1.78
SQSTM1-202ENST00000389805 KANK4Q5T7N3 995 aaPredicted RBP26.19■■□□□ 1.78
SQSTM1-202ENST00000389805 IGF1RP08069 1367 aa26.15■■□□□ 1.78
SQSTM1-202ENST00000389805 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
SQSTM1-202ENST00000389805 PRDM2Q13029 1718 aa26.1■■□□□ 1.77
SQSTM1-202ENST00000389805 ARHGAP35Q9NRY4 1499 aa26.05■■□□□ 1.76
SQSTM1-202ENST00000389805 FANCD2Q9BXW9 1451 aa26.04■■□□□ 1.76
SQSTM1-202ENST00000389805 NESP48681 1621 aa26.03■■□□□ 1.76
SQSTM1-202ENST00000389805 CARMIL1Q5VZK9 1371 aa26.02■■□□□ 1.76
SQSTM1-202ENST00000389805 DNAJC5BQ9UF47 199 aa25.95■■□□□ 1.75
SQSTM1-202ENST00000389805 RAD54L2Q9Y4B4 1467 aa25.95■■□□□ 1.74
SQSTM1-202ENST00000389805 P3H3Q8IVL6 736 aa25.92■■□□□ 1.74
SQSTM1-202ENST00000389805 ITGAEP38570 1179 aa25.87■■□□□ 1.73
SQSTM1-202ENST00000389805 TOPBP1Q92547 1522 aa25.83■■□□□ 1.73
SQSTM1-202ENST00000389805 POLA1P09884 1462 aaPredicted RBP25.83■■□□□ 1.73
SQSTM1-202ENST00000389805 SUPT16HQ9Y5B9 1047 aaKnown RBP25.82■■□□□ 1.72
SQSTM1-202ENST00000389805 ATP1B4Q9UN42 357 aaPredicted RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms