RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DDX3XO00571 662 aaKnown RBP eCLIP18.97■□□□□ 0.633e-52■■■□□ 17.8
SQSTM1-202ENST00000389805 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.53■□□□□ 0.563e-24■■□□□ 13.5
SQSTM1-202ENST00000389805 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.98■□□□□ 0.475e-15■■□□□ 14.4
SQSTM1-202ENST00000389805 ZC3H11AO75152 810 aaKnown RBP eCLIP18.53■□□□□ 0.562e-14■■■■□ 19.8
SQSTM1-202ENST00000389805 RBFOX2O43251 390 aaKnown RBP eCLIP14.84□□□□□ -0.034e-14■■■□□ 14.6
SQSTM1-202ENST00000389805 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.5□□□□□ -0.252e-12■■■□□ 17
SQSTM1-202ENST00000389805 PPIGQ13427 754 aaKnown RBP eCLIP16.9■□□□□ 0.34e-12■■□□□ 11.7
SQSTM1-202ENST00000389805 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.27■□□□□ 0.688e-12■■□□□ 13.9
SQSTM1-202ENST00000389805 ZRANB2O95218 330 aaKnown RBP eCLIP20.42■□□□□ 0.861e-11■■□□□ 13.3
SQSTM1-202ENST00000389805 DDX42Q86XP3 938 aaKnown RBP eCLIP19.35■□□□□ 0.692e-11■□□□□ 10.2
SQSTM1-202ENST00000389805 LARP4Q71RC2 724 aaKnown RBP eCLIP17.52■□□□□ 0.393e-11■□□□□ 8.9
SQSTM1-202ENST00000389805 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.09■□□□□ 0.657e-11■■□□□ 13.1
SQSTM1-202ENST00000389805 U2AF2P26368 475 aaKnown RBP eCLIP21.23■□□□□ 0.994e-10■□□□□ 10.9
SQSTM1-202ENST00000389805 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.944e-10■■□□□ 11.8
SQSTM1-202ENST00000389805 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.82■□□□□ 0.287e-10■■□□□ 12.9
SQSTM1-202ENST00000389805 PABPC4Q13310 644 aaKnown RBP eCLIP19.25■□□□□ 0.678e-10■■■□□ 18
SQSTM1-202ENST00000389805 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.72■□□□□ 0.593e-9■■■□□ 18.1
SQSTM1-202ENST00000389805 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.43■□□□□ 0.386e-9■■■□□ 16.2
SQSTM1-202ENST00000389805 PRPF4O43172 522 aaKnown RBP eCLIP18.52■□□□□ 0.561e-8■■■■□ 19.6
SQSTM1-202ENST00000389805 NONOQ15233 471 aaKnown RBP eCLIP19.57■□□□□ 0.722e-8■■■■□ 21.7
SQSTM1-202ENST00000389805 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.92■□□□□ 0.33e-8■□□□□ 10.2
SQSTM1-202ENST00000389805 AQRO60306 1485 aaKnown RBP eCLIP25.31■■□□□ 1.643e-8■■■■■ 26.9
SQSTM1-202ENST00000389805 EWSR1Q01844 656 aaKnown RBP eCLIP15.32■□□□□ 0.043e-8■■■□□ 18.8
SQSTM1-202ENST00000389805 HNRNPMP52272 730 aaKnown RBP eCLIP24.29■■□□□ 1.484e-8■■■■□ 21.3
SQSTM1-202ENST00000389805 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.28■□□□□ 0.364e-8■■□□□ 14.3
SQSTM1-202ENST00000389805 NKRFO15226 690 aaKnown RBP eCLIP19.54■□□□□ 0.724e-8■□□□□ 9.4
SQSTM1-202ENST00000389805 SRSF7Q16629 238 aaKnown RBP eCLIP14.74□□□□□ -0.054e-8■□□□□ 9.2
SQSTM1-202ENST00000389805 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.46■■□□□ 1.038e-8■■■■□ 19.4
SQSTM1-202ENST00000389805 RBM22Q9NW64 420 aaKnown RBP eCLIP17.65■□□□□ 0.428e-8■■■■■ 31.1
SQSTM1-202ENST00000389805 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.37■□□□□ 0.378e-8■■■■□ 21.6
SQSTM1-202ENST00000389805 UPF1Q92900 1129 aaKnown RBP eCLIP17.97■□□□□ 0.479e-8■■■□□ 15.9
SQSTM1-202ENST00000389805 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.43■□□□□ 0.381e-7■■■□□ 14.6
SQSTM1-202ENST00000389805 AARSP49588 968 aaKnown RBP eCLIP19.79■□□□□ 0.761e-7■□□□□ 8.5
SQSTM1-202ENST00000389805 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.35■□□□□ 0.531e-7■□□□□ 10.8
SQSTM1-202ENST00000389805 GTF2F1P35269 517 aaKnown RBP eCLIP21.2■□□□□ 0.981e-7■■■■□ 24.5
SQSTM1-202ENST00000389805 EFTUD2Q15029 972 aaKnown RBP eCLIP18.51■□□□□ 0.552e-7■■■■□ 19.3
SQSTM1-202ENST00000389805 FXR2P51116 673 aaKnown RBP eCLIP19.4■□□□□ 0.72e-7■■□□□ 14
SQSTM1-202ENST00000389805 U2AF1Q01081 240 aaKnown RBP eCLIP22.62■■□□□ 1.212e-7■□□□□ 8.7
SQSTM1-202ENST00000389805 G3BP1Q13283 466 aaKnown RBP eCLIP21.03■□□□□ 0.962e-7■□□□□ 10.8
SQSTM1-202ENST00000389805 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.082e-7■□□□□ 9.6
SQSTM1-202ENST00000389805 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.09■□□□□ 0.653e-7■■■■■ 32.1
SQSTM1-202ENST00000389805 SUB1P53999 127 aaKnown RBP eCLIP13.95□□□□□ -0.183e-7■■■■□ 26.7
SQSTM1-202ENST00000389805 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.86■□□□□ 0.293e-7■■■□□ 14.7
SQSTM1-202ENST00000389805 TAF15Q92804 592 aaKnown RBP eCLIP14.92□□□□□ -0.024e-7■□□□□ 10.7
SQSTM1-202ENST00000389805 RBM15Q96T37 977 aaKnown RBP eCLIP18.59■□□□□ 0.574e-7■■□□□ 14.1
SQSTM1-202ENST00000389805 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.97■□□□□ 0.634e-7■■■■□ 22.8
SQSTM1-202ENST00000389805 FUSP35637 526 aaKnown RBP eCLIP11.71□□□□□ -0.544e-7■■■□□ 15.3
SQSTM1-202ENST00000389805 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.27■□□□□ 0.365e-7■■■■■ 35
SQSTM1-202ENST00000389805 TROVE2P10155 538 aaKnown RBP eCLIP18.53■□□□□ 0.565e-7■□□□□ 10.5
SQSTM1-202ENST00000389805 FMR1Q06787 632 aaKnown RBP eCLIP20.03■□□□□ 0.85e-7■■□□□ 13
SQSTM1-202ENST00000389805 TIA1P31483 386 aaKnown RBP eCLIP16.71■□□□□ 0.266e-7■■□□□ 13.2
SQSTM1-202ENST00000389805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.92■■□□□ 1.426e-7■■■■□ 21.5
SQSTM1-202ENST00000389805 RPS3P23396 243 aaKnown RBP eCLIP17.04■□□□□ 0.326e-7■■□□□ 14.1
SQSTM1-202ENST00000389805 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.18■□□□□ 0.666e-7■□□□□ 10.6
SQSTM1-202ENST00000389805 SF3A3Q12874 501 aaKnown RBP eCLIP19.45■□□□□ 0.76e-7■■□□□ 14.3
SQSTM1-202ENST00000389805 SF3B4Q15427 424 aaKnown RBP eCLIP17.63■□□□□ 0.417e-7■■■■■ 39.2
SQSTM1-202ENST00000389805 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.42■□□□□ 0.548e-7■■□□□ 14.1
SQSTM1-202ENST00000389805 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.49■□□□□ 0.878e-7■□□□□ 10.8
SQSTM1-202ENST00000389805 DDX6P26196 483 aaKnown RBP eCLIP16.74■□□□□ 0.278e-7■□□□□ 10.3
SQSTM1-202ENST00000389805 AKAP1Q92667 903 aaKnown RBP eCLIP16.74■□□□□ 0.271e-6■□□□□ 9.1
SQSTM1-202ENST00000389805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.11■■□□□ 1.611e-6■□□□□ 11.1
SQSTM1-202ENST00000389805 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.39■□□□□ 0.531e-6■■□□□ 14.4
SQSTM1-202ENST00000389805 SRSF1Q07955 248 aaKnown RBP eCLIP13.61□□□□□ -0.231e-6■■□□□ 13.1
SQSTM1-202ENST00000389805 AATFQ9NY61 560 aaKnown RBP eCLIP20.02■□□□□ 0.81e-6■□□□□ 10.1
SQSTM1-202ENST00000389805 HNRNPCP07910 306 aaKnown RBP eCLIP18.27■□□□□ 0.511e-6■■■□□ 15.2
SQSTM1-202ENST00000389805 SND1Q7KZF4 910 aaKnown RBP eCLIP19.72■□□□□ 0.751e-6■□□□□ 8.1
SQSTM1-202ENST00000389805 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.66■□□□□ 0.581e-6■■□□□ 13.2
SQSTM1-202ENST00000389805 FKBP4Q02790 459 aaKnown RBP eCLIP20.65■□□□□ 0.91e-6■■□□□ 13.4
SQSTM1-202ENST00000389805 LSM11P83369 360 aaKnown RBP eCLIP16.64■□□□□ 0.251e-6■■□□□ 12.6
SQSTM1-202ENST00000389805 PCBP1Q15365 356 aaKnown RBP eCLIP17.87■□□□□ 0.452e-6■■□□□ 12.6
SQSTM1-202ENST00000389805 PCBP2Q15366 365 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■□□□□ 10.9
SQSTM1-202ENST00000389805 CDC40O60508 579 aaKnown RBP eCLIP15.85■□□□□ 0.133e-6■□□□□ 9.5
SQSTM1-202ENST00000389805 SF3B1O75533 1304 aaKnown RBP eCLIP18.15■□□□□ 0.53e-6■■■■■ 54.2
SQSTM1-202ENST00000389805 YBX3P16989 372 aaKnown RBP eCLIP18.16■□□□□ 0.54e-6■□□□□ 11.2
SQSTM1-202ENST00000389805 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.91■□□□□ 0.784e-6■■■□□ 14.9
SQSTM1-202ENST00000389805 FXR1P51114 621 aaKnown RBP eCLIP19.88■□□□□ 0.774e-6■□□□□ 9.8
SQSTM1-202ENST00000389805 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.74■□□□□ 0.595e-6■■■□□ 15.4
SQSTM1-202ENST00000389805 FTOQ9C0B1 505 aaKnown RBP eCLIP20.58■□□□□ 0.888e-6■■■□□ 15.4
SQSTM1-202ENST00000389805 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.87■□□□□ 0.298e-6■■□□□ 12.6
SQSTM1-202ENST00000389805 XRCC6P12956 609 aaKnown RBP eCLIP22.53■■□□□ 1.21e-5■■■□□ 14.9
Retrieved 80 of 80 RNA–protein pairs in 42 ms