RNA–Protein interactions for RNA: ENST00000380877.7

GABPB1-203, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPB1, Length 4,816 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-203ENST00000380877 NCAPD3P42695 1498 aa16.95■□□□□ 0.3
GABPB1-203ENST00000380877 ESF1Q9H501 851 aaKnown RBP16.94■□□□□ 0.3
GABPB1-203ENST00000380877 RUSC2Q8N2Y8 1516 aa16.94■□□□□ 0.3
GABPB1-203ENST00000380877 BCANQ96GW7 911 aa16.93■□□□□ 0.3
GABPB1-203ENST00000380877 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
GABPB1-203ENST00000380877 RAPGEF2Q9Y4G8 1499 aa16.92■□□□□ 0.3
GABPB1-203ENST00000380877 KANK4Q5T7N3 995 aaPredicted RBP16.92■□□□□ 0.3
GABPB1-203ENST00000380877 KDM2AQ9Y2K7 1162 aa16.89■□□□□ 0.29
GABPB1-203ENST00000380877 ACIN1Q9UKV3 1341 aaKnown RBP16.88■□□□□ 0.29
GABPB1-203ENST00000380877 STAG3Q9UJ98 1225 aa16.86■□□□□ 0.29
GABPB1-203ENST00000380877 HIRIP3Q9BW71 556 aaPredicted RBP16.85■□□□□ 0.29
GABPB1-203ENST00000380877 FMN1Q68DA7 1419 aa16.83■□□□□ 0.28
GABPB1-203ENST00000380877 CLSPNQ9HAW4 1339 aa16.81■□□□□ 0.28
GABPB1-203ENST00000380877 EIF4G2P78344 907 aaKnown RBP eCLIP16.8■□□□□ 0.28
GABPB1-203ENST00000380877 CARMIL2Q6F5E8 1435 aa16.79■□□□□ 0.28
GABPB1-203ENST00000380877 SIN3AQ96ST3 1273 aa16.79■□□□□ 0.28
GABPB1-203ENST00000380877 DAXXQ9UER7 740 aaPredicted RBP16.78■□□□□ 0.28
GABPB1-203ENST00000380877 ARHGAP35Q9NRY4 1499 aa16.78■□□□□ 0.28
GABPB1-203ENST00000380877 FHOD3Q2V2M9 1422 aa16.77■□□□□ 0.28
GABPB1-203ENST00000380877 MIER1Q8N108 512 aa16.77■□□□□ 0.28
GABPB1-203ENST00000380877 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
GABPB1-203ENST00000380877 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
GABPB1-203ENST00000380877 RGL3Q3MIN7 710 aa16.74■□□□□ 0.27
GABPB1-203ENST00000380877 HNRNPUQ00839 825 aaKnown RBP eCLIP16.73■□□□□ 0.27
GABPB1-203ENST00000380877 IGF1RP08069 1367 aa16.73■□□□□ 0.27
GABPB1-203ENST00000380877 FAM9BQ8IZU0 186 aa16.72■□□□□ 0.27
GABPB1-203ENST00000380877 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
GABPB1-203ENST00000380877 CFTRP13569 1480 aa16.7■□□□□ 0.26
GABPB1-203ENST00000380877 NEFMP07197 916 aa16.69■□□□□ 0.26
GABPB1-203ENST00000380877 RAD54L2Q9Y4B4 1467 aa16.69■□□□□ 0.26
GABPB1-203ENST00000380877 BICRAQ9NZM4 1560 aa16.68■□□□□ 0.26
GABPB1-203ENST00000380877 JPH4Q96JJ6 628 aa16.68■□□□□ 0.26
GABPB1-203ENST00000380877 TMC1Q8TDI8 760 aa16.67■□□□□ 0.26
GABPB1-203ENST00000380877 MRS2Q9HD23 443 aa16.66■□□□□ 0.26
GABPB1-203ENST00000380877 GAPVD1Q14C86 1478 aa16.64■□□□□ 0.26
GABPB1-203ENST00000380877 HMGXB3Q12766 1538 aa16.64■□□□□ 0.25
GABPB1-203ENST00000380877 RAB3GAP2Q9H2M9 1393 aa16.62■□□□□ 0.25
GABPB1-203ENST00000380877 CANXP27824 592 aaKnown RBP16.62■□□□□ 0.25
GABPB1-203ENST00000380877 TIMELESSQ9UNS1 1208 aa16.61■□□□□ 0.25
GABPB1-203ENST00000380877 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
GABPB1-203ENST00000380877 CC2D2AQ9P2K1 1620 aa16.6■□□□□ 0.25
GABPB1-203ENST00000380877 CARD11Q9BXL7 1154 aa16.59■□□□□ 0.25
GABPB1-203ENST00000380877 SALL2Q9Y467 1007 aaPredicted RBP16.59■□□□□ 0.25
GABPB1-203ENST00000380877 NESP48681 1621 aa16.58■□□□□ 0.24
GABPB1-203ENST00000380877 FKBP8Q14318 412 aa16.58■□□□□ 0.24
GABPB1-203ENST00000380877 SENP3Q9H4L4 574 aaPredicted RBP16.57■□□□□ 0.24
GABPB1-203ENST00000380877 SLC24A1O60721 1099 aa16.54■□□□□ 0.24
GABPB1-203ENST00000380877 EFCAB2Q5VUJ9 269 aa16.54■□□□□ 0.24
GABPB1-203ENST00000380877 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
GABPB1-203ENST00000380877 PPP1R15AO75807 674 aaPredicted RBP16.53■□□□□ 0.24
GABPB1-203ENST00000380877 AQRO60306 1485 aaKnown RBP eCLIP16.52■□□□□ 0.24
GABPB1-203ENST00000380877 PKD2Q13563 968 aa16.52■□□□□ 0.24
GABPB1-203ENST00000380877 FOXD1Q16676 465 aa16.52■□□□□ 0.23
GABPB1-203ENST00000380877 WDR43Q15061 677 aaKnown RBP eCLIP16.51■□□□□ 0.23
GABPB1-203ENST00000380877 ARID4BQ4LE39 1312 aaPredicted RBP16.51■□□□□ 0.23
GABPB1-203ENST00000380877 DCAF11Q8TEB1 546 aa16.5■□□□□ 0.23
GABPB1-203ENST00000380877 MPHOSPH9Q99550 1183 aa16.5■□□□□ 0.23
GABPB1-203ENST00000380877 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
GABPB1-203ENST00000380877 CUX1P39880 1505 aa16.48■□□□□ 0.23
GABPB1-203ENST00000380877 KIF21BO75037 1637 aa16.47■□□□□ 0.23
GABPB1-203ENST00000380877 TOP2BQ02880 1626 aa16.47■□□□□ 0.23
GABPB1-203ENST00000380877 CDCA8Q53HL2 280 aa16.47■□□□□ 0.23
GABPB1-203ENST00000380877 ZBTB47Q9UFB7 747 aaPredicted RBP16.47■□□□□ 0.23
GABPB1-203ENST00000380877 KANK1Q14678 1352 aa16.47■□□□□ 0.23
GABPB1-203ENST00000380877 PTPRGP23470 1445 aa16.47■□□□□ 0.23
GABPB1-203ENST00000380877 NUP155O75694 1391 aa16.46■□□□□ 0.23
GABPB1-203ENST00000380877 HNRNPMP52272 730 aaKnown RBP eCLIP16.46■□□□□ 0.23
GABPB1-203ENST00000380877 ERICH3Q5RHP9 1530 aa16.45■□□□□ 0.22
GABPB1-203ENST00000380877 TOPBP1Q92547 1522 aa16.44■□□□□ 0.22
GABPB1-203ENST00000380877 PRXQ9BXM0 1461 aa16.43■□□□□ 0.22
GABPB1-203ENST00000380877 POLA1P09884 1462 aaPredicted RBP16.42■□□□□ 0.22
GABPB1-203ENST00000380877 RSPH4AQ5TD94 716 aa16.42■□□□□ 0.22
GABPB1-203ENST00000380877 GGT6Q6P531 493 aa16.42■□□□□ 0.22
GABPB1-203ENST00000380877 MYT1Q01538 1121 aa16.42■□□□□ 0.22
GABPB1-203ENST00000380877 KNSTRNQ9Y448 316 aa16.41■□□□□ 0.22
GABPB1-203ENST00000380877 GRIN2BQ13224 1484 aa16.41■□□□□ 0.22
GABPB1-203ENST00000380877 BCL11AQ9H165 835 aa16.4■□□□□ 0.22
GABPB1-203ENST00000380877 DHX57Q6P158 1386 aaKnown RBP16.39■□□□□ 0.21
GABPB1-203ENST00000380877 ARAP1Q96P48 1450 aa16.39■□□□□ 0.21
GABPB1-203ENST00000380877 MRC2Q9UBG0 1479 aa16.39■□□□□ 0.21
GABPB1-203ENST00000380877 HSPA5P11021 654 aaKnown RBP16.38■□□□□ 0.21
GABPB1-203ENST00000380877 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
GABPB1-203ENST00000380877 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
GABPB1-203ENST00000380877 SCAF1Q9H7N4 1312 aaKnown RBP16.37■□□□□ 0.21
GABPB1-203ENST00000380877 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
GABPB1-203ENST00000380877 RTL5Q5HYW3 569 aaPredicted RBP16.36■□□□□ 0.21
GABPB1-203ENST00000380877 SPAG9O60271 1321 aaKnown RBP16.36■□□□□ 0.21
GABPB1-203ENST00000380877 MLECQ14165 292 aa16.36■□□□□ 0.21
GABPB1-203ENST00000380877 L3MBTL2Q969R5 705 aa16.34■□□□□ 0.21
GABPB1-203ENST00000380877 KIF3BO15066 747 aa16.34■□□□□ 0.21
GABPB1-203ENST00000380877 CASKIN1Q8WXD9 1431 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 IRX6P78412 446 aaPredicted RBP16.33■□□□□ 0.2
GABPB1-203ENST00000380877 PHLDB1Q86UU1 1377 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 DNMBPQ6XZF7 1577 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 TMF1P82094 1093 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 CCDC136Q96JN2 1154 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 LRRC9Q6ZRR7 1453 aa16.33■□□□□ 0.2
GABPB1-203ENST00000380877 POGKQ9P215 609 aa16.32■□□□□ 0.2
GABPB1-203ENST00000380877 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms