RNA–Protein interactions for RNA: ENST00000378125.4

PCDHA4-201, Transcript of protocadherin alpha 4, humanhuman

TSL 5 BASIC

Gene PCDHA4, Length 2,328 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-201ENST00000378125 RRBP1Q9P2E9 1410 aaKnown RBP28.7■■■□□ 2.19
PCDHA4-201ENST00000378125 ABCA5Q8WWZ7 1642 aa28.69■■■□□ 2.18
PCDHA4-201ENST00000378125 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
PCDHA4-201ENST00000378125 PCF11O94913 1555 aaKnown RBP28.66■■■□□ 2.18
PCDHA4-201ENST00000378125 FHAD1B1AJZ9 1412 aa28.65■■■□□ 2.18
PCDHA4-201ENST00000378125 CTTNBP2Q8WZ74 1663 aa28.64■■■□□ 2.18
PCDHA4-201ENST00000378125 LRRC9Q6ZRR7 1453 aa28.61■■■□□ 2.17
PCDHA4-201ENST00000378125 DIEXFQ68CQ4 756 aaKnown RBP28.6■■■□□ 2.17
PCDHA4-201ENST00000378125 TARBP1Q13395 1621 aaKnown RBP28.58■■■□□ 2.17
PCDHA4-201ENST00000378125 MAP3K1Q13233 1512 aa28.57■■■□□ 2.16
PCDHA4-201ENST00000378125 EFCAB5A4FU69 1503 aa28.55■■■□□ 2.16
PCDHA4-201ENST00000378125 DHX57Q6P158 1386 aaKnown RBP28.53■■■□□ 2.16
PCDHA4-201ENST00000378125 PHLDB1Q86UU1 1377 aa28.53■■■□□ 2.16
PCDHA4-201ENST00000378125 AQRO60306 1485 aaKnown RBP eCLIP28.53■■■□□ 2.16
PCDHA4-201ENST00000378125 ZNF316A6NFI3 1004 aaPredicted RBP28.52■■■□□ 2.16
PCDHA4-201ENST00000378125 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
PCDHA4-201ENST00000378125 CFAP43Q8NDM7 1665 aa28.49■■■□□ 2.15
PCDHA4-201ENST00000378125 FAM50AQ14320 339 aaKnown RBP28.49■■■□□ 2.15
PCDHA4-201ENST00000378125 CASKIN1Q8WXD9 1431 aa28.47■■■□□ 2.15
PCDHA4-201ENST00000378125 FYCO1Q9BQS8 1478 aa28.47■■■□□ 2.15
PCDHA4-201ENST00000378125 FMN1Q68DA7 1419 aa28.42■■■□□ 2.14
PCDHA4-201ENST00000378125 PBRM1Q86U86 1689 aa28.41■■■□□ 2.14
PCDHA4-201ENST00000378125 SAMD9Q5K651 1589 aa28.37■■■□□ 2.13
PCDHA4-201ENST00000378125 SNAPC4Q5SXM2 1469 aa28.37■■■□□ 2.13
PCDHA4-201ENST00000378125 ZNF608Q9ULD9 1512 aaPredicted RBP28.35■■■□□ 2.13
PCDHA4-201ENST00000378125 RAB3GAP2Q9H2M9 1393 aa28.35■■■□□ 2.13
PCDHA4-201ENST00000378125 CLSPNQ9HAW4 1339 aa28.32■■■□□ 2.12
PCDHA4-201ENST00000378125 MTUS2Q5JR59 1369 aa28.28■■■□□ 2.12
PCDHA4-201ENST00000378125 GRIN2BQ13224 1484 aa28.28■■■□□ 2.12
PCDHA4-201ENST00000378125 ADAMTS12P58397 1594 aa28.28■■■□□ 2.12
PCDHA4-201ENST00000378125 LRRIQ1Q96JM4 1722 aa28.27■■■□□ 2.12
PCDHA4-201ENST00000378125 ERCC6Q03468 1493 aa28.26■■■□□ 2.11
PCDHA4-201ENST00000378125 WDR62O43379 1518 aa28.25■■■□□ 2.11
PCDHA4-201ENST00000378125 IFT140Q96RY7 1462 aa28.25■■■□□ 2.11
PCDHA4-201ENST00000378125 SETD5Q9C0A6 1442 aa28.24■■■□□ 2.11
PCDHA4-201ENST00000378125 ARID3CA6NKF2 412 aa28.2■■■□□ 2.11
PCDHA4-201ENST00000378125 IQGAP2Q13576 1575 aa28.2■■■□□ 2.11
PCDHA4-201ENST00000378125 FGD6Q6ZV73 1430 aa28.15■■■□□ 2.1
PCDHA4-201ENST00000378125 NCOA2Q15596 1464 aa28.11■■■□□ 2.09
PCDHA4-201ENST00000378125 MAPKBP1O60336 1514 aa28.11■■■□□ 2.09
PCDHA4-201ENST00000378125 EIF4G3O43432 1585 aaKnown RBP28.1■■■□□ 2.09
PCDHA4-201ENST00000378125 MIER1Q8N108 512 aa28.08■■■□□ 2.09
PCDHA4-201ENST00000378125 MAGI3Q5TCQ9 1506 aa28.07■■■□□ 2.08
PCDHA4-201ENST00000378125 THOC2Q8NI27 1593 aaKnown RBP28.06■■■□□ 2.08
PCDHA4-201ENST00000378125 SCAF1Q9H7N4 1312 aaKnown RBP28.05■■■□□ 2.08
PCDHA4-201ENST00000378125 FBLN2P98095 1184 aa28.04■■■□□ 2.08
PCDHA4-201ENST00000378125 NEUROD1Q13562 356 aa28.04■■■□□ 2.08
PCDHA4-201ENST00000378125 SIN3AQ96ST3 1273 aa28.04■■■□□ 2.08
PCDHA4-201ENST00000378125 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.03■■■□□ 2.08
PCDHA4-201ENST00000378125 SUPT6HQ7KZ85 1726 aaKnown RBP28.03■■■□□ 2.08
PCDHA4-201ENST00000378125 EHBP1L1Q8N3D4 1523 aa28.02■■■□□ 2.08
PCDHA4-201ENST00000378125 MYOM3Q5VTT5 1437 aa28.02■■■□□ 2.08
PCDHA4-201ENST00000378125 CDK13Q14004 1512 aaKnown RBP28.01■■■□□ 2.08
PCDHA4-201ENST00000378125 PTPRKQ15262 1439 aa28.01■■■□□ 2.07
PCDHA4-201ENST00000378125 HECW1Q76N89 1606 aa28■■■□□ 2.07
PCDHA4-201ENST00000378125 GRIN2AQ12879 1464 aa28■■■□□ 2.07
PCDHA4-201ENST00000378125 CCDC18Q5T9S5 1454 aa27.99■■■□□ 2.07
PCDHA4-201ENST00000378125 EPRSP07814 1512 aaKnown RBP27.99■■■□□ 2.07
PCDHA4-201ENST00000378125 CHMP7Q8WUX9 453 aaPredicted RBP27.98■■■□□ 2.07
PCDHA4-201ENST00000378125 YTHDC1Q96MU7 727 aaKnown RBP27.98■■■□□ 2.07
PCDHA4-201ENST00000378125 UGGT2Q9NYU1 1516 aa27.98■■■□□ 2.07
PCDHA4-201ENST00000378125 KIAA0586Q9BVV6 1533 aa27.97■■■□□ 2.07
PCDHA4-201ENST00000378125 ACIN1Q9UKV3 1341 aaKnown RBP27.96■■■□□ 2.07
PCDHA4-201ENST00000378125 DISP1Q96F81 1524 aa27.93■■■□□ 2.06
PCDHA4-201ENST00000378125 KIAA0556O60303 1618 aa27.9■■■□□ 2.06
PCDHA4-201ENST00000378125 PTPN23Q9H3S7 1636 aa27.9■■■□□ 2.06
PCDHA4-201ENST00000378125 CHIC2Q9UKJ5 165 aa27.9■■■□□ 2.06
PCDHA4-201ENST00000378125 CENPBP07199 599 aaPredicted RBP27.88■■■□□ 2.05
PCDHA4-201ENST00000378125 ARHGEF11O15085 1522 aa27.88■■■□□ 2.05
PCDHA4-201ENST00000378125 MAGI1Q96QZ7 1491 aaPredicted RBP27.85■■■□□ 2.05
PCDHA4-201ENST00000378125 RRP7BPQ9NSQ0 103 aa27.85■■■□□ 2.05
PCDHA4-201ENST00000378125 HFM1A2PYH4 1435 aa27.84■■■□□ 2.05
PCDHA4-201ENST00000378125 CEP170Q5SW79 1584 aa27.83■■■□□ 2.05
PCDHA4-201ENST00000378125 SYNJ2O15056 1496 aa27.83■■■□□ 2.05
PCDHA4-201ENST00000378125 NAIPQ13075 1403 aa27.81■■■□□ 2.04
PCDHA4-201ENST00000378125 NUP153P49790 1475 aaKnown RBP27.78■■■□□ 2.04
PCDHA4-201ENST00000378125 RAPGEF6Q8TEU7 1601 aa27.75■■■□□ 2.03
PCDHA4-201ENST00000378125 JPH4Q96JJ6 628 aa27.73■■■□□ 2.03
PCDHA4-201ENST00000378125 TCOF1Q13428 1488 aaKnown RBP27.73■■■□□ 2.03
PCDHA4-201ENST00000378125 UACAQ9BZF9 1416 aa27.72■■■□□ 2.03
PCDHA4-201ENST00000378125 PLB1Q6P1J6 1458 aa27.71■■■□□ 2.03
PCDHA4-201ENST00000378125 ZNF644Q9H582 1327 aaPredicted RBP27.68■■■□□ 2.02
PCDHA4-201ENST00000378125 TRIM52Q96A61 297 aa27.67■■■□□ 2.02
PCDHA4-201ENST00000378125 GTF3C3Q9Y5Q9 886 aa27.67■■■□□ 2.02
PCDHA4-201ENST00000378125 MIA2Q96PC5 1412 aa27.66■■■□□ 2.02
PCDHA4-201ENST00000378125 CDK11AQ9UQ88 783 aaPredicted RBP27.66■■■□□ 2.02
PCDHA4-201ENST00000378125 HIRIP3Q9BW71 556 aaPredicted RBP27.66■■■□□ 2.02
PCDHA4-201ENST00000378125 PRG4Q92954 1404 aaPredicted RBP27.65■■■□□ 2.02
PCDHA4-201ENST00000378125 NUP160Q12769 1436 aa27.65■■■□□ 2.02
PCDHA4-201ENST00000378125 PPP1R15AO75807 674 aaPredicted RBP27.64■■■□□ 2.02
PCDHA4-201ENST00000378125 CARMIL2Q6F5E8 1435 aa27.62■■■□□ 2.01
PCDHA4-201ENST00000378125 KDM6BO15054 1643 aa27.62■■■□□ 2.01
PCDHA4-201ENST00000378125 TONSLQ96HA7 1378 aa27.62■■■□□ 2.01
PCDHA4-201ENST00000378125 TIMELESSQ9UNS1 1208 aa27.62■■■□□ 2.01
PCDHA4-201ENST00000378125 GCC2Q8IWJ2 1684 aa27.56■■■□□ 2
PCDHA4-201ENST00000378125 ZNF777Q9ULD5 760 aaPredicted RBP27.55■■■□□ 2
PCDHA4-201ENST00000378125 DAPK1P53355 1430 aa27.54■■■□□ 2
PCDHA4-201ENST00000378125 TROQ12816 1431 aaPredicted RBP27.54■■■□□ 2
PCDHA4-201ENST00000378125 DDX10Q13206 875 aaKnown RBP27.51■■□□□ 1.99
PCDHA4-201ENST00000378125 FOXD1Q16676 465 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms