RNA–Protein interactions for RNA: ENST00000377453.8

CLN5-201, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLN5, Length 2,629 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-201ENST00000377453 TIAM1Q13009 1591 aa29.54■■■□□ 2.32
CLN5-201ENST00000377453 KCNH8Q96L42 1107 aa29.53■■■□□ 2.32
CLN5-201ENST00000377453 SIN3AQ96ST3 1273 aa29.52■■■□□ 2.32
CLN5-201ENST00000377453 MAPKBP1O60336 1514 aa29.49■■■□□ 2.31
CLN5-201ENST00000377453 LRRC9Q6ZRR7 1453 aa29.47■■■□□ 2.31
CLN5-201ENST00000377453 RAD54L2Q9Y4B4 1467 aa29.46■■■□□ 2.31
CLN5-201ENST00000377453 PRDM2Q13029 1718 aa29.45■■■□□ 2.3
CLN5-201ENST00000377453 FHOD3Q2V2M9 1422 aa29.43■■■□□ 2.3
CLN5-201ENST00000377453 SETD5Q9C0A6 1442 aa29.41■■■□□ 2.3
CLN5-201ENST00000377453 FANCD2Q9BXW9 1451 aa29.39■■■□□ 2.29
CLN5-201ENST00000377453 PCF11O94913 1555 aaKnown RBP29.38■■■□□ 2.29
CLN5-201ENST00000377453 HIRIP3Q9BW71 556 aaPredicted RBP29.38■■■□□ 2.29
CLN5-201ENST00000377453 SUPT16HQ9Y5B9 1047 aaKnown RBP29.34■■■□□ 2.29
CLN5-201ENST00000377453 DDX10Q13206 875 aaKnown RBP29.3■■■□□ 2.28
CLN5-201ENST00000377453 MAP3K1Q13233 1512 aa29.3■■■□□ 2.28
CLN5-201ENST00000377453 WDR97A6NE52 1622 aa29.29■■■□□ 2.28
CLN5-201ENST00000377453 FHAD1B1AJZ9 1412 aa29.28■■■□□ 2.28
CLN5-201ENST00000377453 POLA1P09884 1462 aaPredicted RBP29.23■■■□□ 2.27
CLN5-201ENST00000377453 CFAP43Q8NDM7 1665 aa29.2■■■□□ 2.26
CLN5-201ENST00000377453 TOPBP1Q92547 1522 aa29.19■■■□□ 2.26
CLN5-201ENST00000377453 ABCA10Q8WWZ4 1543 aa29.14■■■□□ 2.25
CLN5-201ENST00000377453 DNMBPQ6XZF7 1577 aa29.14■■■□□ 2.25
CLN5-201ENST00000377453 TDRD9Q8NDG6 1382 aaKnown RBP29.1■■■□□ 2.25
CLN5-201ENST00000377453 CASKIN1Q8WXD9 1431 aa29.09■■■□□ 2.25
CLN5-201ENST00000377453 BCANQ96GW7 911 aa29.08■■■□□ 2.25
CLN5-201ENST00000377453 FYCO1Q9BQS8 1478 aa29.08■■■□□ 2.25
CLN5-201ENST00000377453 PPP1R15AO75807 674 aaPredicted RBP29.04■■■□□ 2.24
CLN5-201ENST00000377453 PTPRKQ15262 1439 aa29.03■■■□□ 2.24
CLN5-201ENST00000377453 URB2Q14146 1524 aaKnown RBP29.02■■■□□ 2.24
CLN5-201ENST00000377453 MTUS2Q5JR59 1369 aa29.01■■■□□ 2.24
CLN5-201ENST00000377453 FGD6Q6ZV73 1430 aa29.01■■■□□ 2.24
CLN5-201ENST00000377453 LAMC3Q9Y6N6 1575 aa29.01■■■□□ 2.23
CLN5-201ENST00000377453 EFCAB5A4FU69 1503 aa28.99■■■□□ 2.23
CLN5-201ENST00000377453 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
CLN5-201ENST00000377453 CTTNBP2Q8WZ74 1663 aa28.94■■■□□ 2.22
CLN5-201ENST00000377453 TRIM52Q96A61 297 aa28.94■■■□□ 2.22
CLN5-201ENST00000377453 FMN1Q68DA7 1419 aa28.93■■■□□ 2.22
CLN5-201ENST00000377453 AQRO60306 1485 aaKnown RBP eCLIP28.92■■■□□ 2.22
CLN5-201ENST00000377453 CCDC18Q5T9S5 1454 aa28.92■■■□□ 2.22
CLN5-201ENST00000377453 PDS5BQ9NTI5 1447 aa28.92■■■□□ 2.22
CLN5-201ENST00000377453 CUL7Q14999 1698 aa28.92■■■□□ 2.22
CLN5-201ENST00000377453 ARID3CA6NKF2 412 aa28.91■■■□□ 2.22
CLN5-201ENST00000377453 KIF21AQ7Z4S6 1674 aa28.9■■■□□ 2.22
CLN5-201ENST00000377453 TSHZ2Q9NRE2 1034 aa28.9■■■□□ 2.22
CLN5-201ENST00000377453 TONSLQ96HA7 1378 aa28.9■■■□□ 2.22
CLN5-201ENST00000377453 FKBP8Q14318 412 aa28.89■■■□□ 2.21
CLN5-201ENST00000377453 CHIC2Q9UKJ5 165 aa28.89■■■□□ 2.21
CLN5-201ENST00000377453 LRRIQ1Q96JM4 1722 aa28.86■■■□□ 2.21
CLN5-201ENST00000377453 RRP7BPQ9NSQ0 103 aa28.86■■■□□ 2.21
CLN5-201ENST00000377453 NCOA2Q15596 1464 aa28.85■■■□□ 2.21
CLN5-201ENST00000377453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.85■■■□□ 2.21
CLN5-201ENST00000377453 TIMELESSQ9UNS1 1208 aa28.83■■■□□ 2.21
CLN5-201ENST00000377453 GAPVD1Q14C86 1478 aa28.82■■■□□ 2.2
CLN5-201ENST00000377453 ANP32CO43423 234 aa28.81■■■□□ 2.2
CLN5-201ENST00000377453 HFM1A2PYH4 1435 aa28.8■■■□□ 2.2
CLN5-201ENST00000377453 NAIPQ13075 1403 aa28.79■■■□□ 2.2
CLN5-201ENST00000377453 PTPN23Q9H3S7 1636 aa28.79■■■□□ 2.2
CLN5-201ENST00000377453 MYOM3Q5VTT5 1437 aa28.77■■■□□ 2.2
CLN5-201ENST00000377453 UACAQ9BZF9 1416 aa28.77■■■□□ 2.2
CLN5-201ENST00000377453 GRIN2BQ13224 1484 aa28.77■■■□□ 2.2
CLN5-201ENST00000377453 SAMD9Q5K651 1589 aa28.75■■■□□ 2.19
CLN5-201ENST00000377453 MAGI3Q5TCQ9 1506 aa28.74■■■□□ 2.19
CLN5-201ENST00000377453 ABCA5Q8WWZ7 1642 aa28.74■■■□□ 2.19
CLN5-201ENST00000377453 FOXD1Q16676 465 aa28.68■■■□□ 2.18
CLN5-201ENST00000377453 CCER2I3L3R5 266 aa28.66■■■□□ 2.18
CLN5-201ENST00000377453 MYT1Q01538 1121 aa28.64■■■□□ 2.18
CLN5-201ENST00000377453 SUPT6HQ7KZ85 1726 aaKnown RBP28.62■■■□□ 2.17
CLN5-201ENST00000377453 KDM5BQ9UGL1 1544 aa28.62■■■□□ 2.17
CLN5-201ENST00000377453 EHBP1L1Q8N3D4 1523 aa28.6■■■□□ 2.17
CLN5-201ENST00000377453 UGGT2Q9NYU1 1516 aa28.6■■■□□ 2.17
CLN5-201ENST00000377453 KDM6BO15054 1643 aa28.59■■■□□ 2.17
CLN5-201ENST00000377453 CDK13Q14004 1512 aaKnown RBP28.58■■■□□ 2.17
CLN5-201ENST00000377453 DENND4BO75064 1496 aaPredicted RBP28.58■■■□□ 2.16
CLN5-201ENST00000377453 HSPA5P11021 654 aaKnown RBP28.57■■■□□ 2.16
CLN5-201ENST00000377453 NEFLP07196 543 aa28.56■■■□□ 2.16
CLN5-201ENST00000377453 WASHC2AQ641Q2 1341 aa28.53■■■□□ 2.16
CLN5-201ENST00000377453 MRC2Q9UBG0 1479 aa28.52■■■□□ 2.16
CLN5-201ENST00000377453 TARBP1Q13395 1621 aaKnown RBP28.51■■■□□ 2.16
CLN5-201ENST00000377453 IRX6P78412 446 aaPredicted RBP28.51■■■□□ 2.15
CLN5-201ENST00000377453 ARHGEF11O15085 1522 aa28.51■■■□□ 2.15
CLN5-201ENST00000377453 HNRNPUQ00839 825 aaKnown RBP eCLIP28.5■■■□□ 2.15
CLN5-201ENST00000377453 THOC2Q8NI27 1593 aaKnown RBP28.48■■■□□ 2.15
CLN5-201ENST00000377453 MPHOSPH9Q99550 1183 aa28.48■■■□□ 2.15
CLN5-201ENST00000377453 EPRSP07814 1512 aaKnown RBP28.48■■■□□ 2.15
CLN5-201ENST00000377453 CCDC184Q52MB2 194 aa28.46■■■□□ 2.15
CLN5-201ENST00000377453 L3MBTL2Q969R5 705 aa28.46■■■□□ 2.15
CLN5-201ENST00000377453 ZNF608Q9ULD9 1512 aaPredicted RBP28.45■■■□□ 2.15
CLN5-201ENST00000377453 ZNF644Q9H582 1327 aaPredicted RBP28.45■■■□□ 2.15
CLN5-201ENST00000377453 C11orf95C9JLR9 678 aaPredicted RBP28.44■■■□□ 2.14
CLN5-201ENST00000377453 ERCC6Q03468 1493 aa28.44■■■□□ 2.14
CLN5-201ENST00000377453 TCOF1Q13428 1488 aaKnown RBP28.42■■■□□ 2.14
CLN5-201ENST00000377453 HECW1Q76N89 1606 aa28.4■■■□□ 2.14
CLN5-201ENST00000377453 IQGAP2Q13576 1575 aa28.4■■■□□ 2.14
CLN5-201ENST00000377453 EIF4G2P78344 907 aaKnown RBP eCLIP28.38■■■□□ 2.13
CLN5-201ENST00000377453 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
CLN5-201ENST00000377453 NBPF8Q3BBV2 869 aa28.35■■■□□ 2.13
CLN5-201ENST00000377453 GCC2Q8IWJ2 1684 aa28.35■■■□□ 2.13
CLN5-201ENST00000377453 CNGB1Q14028 1251 aaPredicted RBP28.33■■■□□ 2.13
CLN5-201ENST00000377453 WDR62O43379 1518 aa28.32■■■□□ 2.12
CLN5-201ENST00000377453 RBM19Q9Y4C8 960 aaKnown RBP28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms