RNA–Protein interactions for RNA: ENST00000372067.7

VEGFA-205, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 3,535 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-205ENST00000372067 TOPBP1Q92547 1522 aa24.95■■□□□ 1.58
VEGFA-205ENST00000372067 PDS5BQ9NTI5 1447 aa24.94■■□□□ 1.58
VEGFA-205ENST00000372067 POLA1P09884 1462 aaPredicted RBP24.93■■□□□ 1.58
VEGFA-205ENST00000372067 FHOD3Q2V2M9 1422 aa24.89■■□□□ 1.58
VEGFA-205ENST00000372067 CCNB3Q8WWL7 1395 aa24.89■■□□□ 1.57
VEGFA-205ENST00000372067 DNMBPQ6XZF7 1577 aa24.85■■□□□ 1.57
VEGFA-205ENST00000372067 PRDM2Q13029 1718 aa24.82■■□□□ 1.56
VEGFA-205ENST00000372067 FHAD1B1AJZ9 1412 aa24.8■■□□□ 1.56
VEGFA-205ENST00000372067 FBLN2P98095 1184 aa24.79■■□□□ 1.56
VEGFA-205ENST00000372067 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
VEGFA-205ENST00000372067 ABCA10Q8WWZ4 1543 aa24.75■■□□□ 1.55
VEGFA-205ENST00000372067 MTUS2Q5JR59 1369 aa24.74■■□□□ 1.55
VEGFA-205ENST00000372067 GAPVD1Q14C86 1478 aa24.72■■□□□ 1.55
VEGFA-205ENST00000372067 LAMC3Q9Y6N6 1575 aa24.7■■□□□ 1.55
VEGFA-205ENST00000372067 DHX57Q6P158 1386 aaKnown RBP24.68■■□□□ 1.54
VEGFA-205ENST00000372067 ANP32EQ9BTT0 268 aa24.67■■□□□ 1.54
VEGFA-205ENST00000372067 MIER1Q8N108 512 aa24.64■■□□□ 1.53
VEGFA-205ENST00000372067 PHLDB1Q86UU1 1377 aa24.63■■□□□ 1.53
VEGFA-205ENST00000372067 AQRO60306 1485 aaKnown RBP eCLIP24.62■■□□□ 1.533e-8■■■■□ 26.2
VEGFA-205ENST00000372067 RRBP1Q9P2E9 1410 aaKnown RBP24.62■■□□□ 1.53
VEGFA-205ENST00000372067 RAB3GAP2Q9H2M9 1393 aa24.61■■□□□ 1.53
VEGFA-205ENST00000372067 LRRC9Q6ZRR7 1453 aa24.61■■□□□ 1.53
VEGFA-205ENST00000372067 TIAM1Q13009 1591 aa24.58■■□□□ 1.52
VEGFA-205ENST00000372067 CHIC2Q9UKJ5 165 aa24.57■■□□□ 1.52
VEGFA-205ENST00000372067 FMN1Q68DA7 1419 aa24.57■■□□□ 1.52
VEGFA-205ENST00000372067 ERCC6Q03468 1493 aa24.56■■□□□ 1.52
VEGFA-205ENST00000372067 SIN3AQ96ST3 1273 aa24.55■■□□□ 1.52
VEGFA-205ENST00000372067 CLSPNQ9HAW4 1339 aa24.54■■□□□ 1.52
VEGFA-205ENST00000372067 PCF11O94913 1555 aaKnown RBP24.52■■□□□ 1.52
VEGFA-205ENST00000372067 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
VEGFA-205ENST00000372067 SETD5Q9C0A6 1442 aa24.51■■□□□ 1.51
VEGFA-205ENST00000372067 TRIM52Q96A61 297 aa24.51■■□□□ 1.51
VEGFA-205ENST00000372067 CUL7Q14999 1698 aa24.47■■□□□ 1.51
VEGFA-205ENST00000372067 CASKIN1Q8WXD9 1431 aa24.47■■□□□ 1.51
VEGFA-205ENST00000372067 KIF21AQ7Z4S6 1674 aa24.46■■□□□ 1.51
VEGFA-205ENST00000372067 RRP7BPQ9NSQ0 103 aa24.46■■□□□ 1.51
VEGFA-205ENST00000372067 EFCAB5A4FU69 1503 aa24.42■■□□□ 1.5
VEGFA-205ENST00000372067 FYCO1Q9BQS8 1478 aa24.42■■□□□ 1.5
VEGFA-205ENST00000372067 MRC2Q9UBG0 1479 aa24.41■■□□□ 1.5
VEGFA-205ENST00000372067 HIRIP3Q9BW71 556 aaPredicted RBP24.4■■□□□ 1.5
VEGFA-205ENST00000372067 ZNF777Q9ULD5 760 aaPredicted RBP24.35■■□□□ 1.49
VEGFA-205ENST00000372067 MAP3K1Q13233 1512 aa24.34■■□□□ 1.49
VEGFA-205ENST00000372067 ZNF608Q9ULD9 1512 aaPredicted RBP24.32■■□□□ 1.48
VEGFA-205ENST00000372067 GRIN2BQ13224 1484 aa24.31■■□□□ 1.48
VEGFA-205ENST00000372067 FGD6Q6ZV73 1430 aa24.3■■□□□ 1.48
VEGFA-205ENST00000372067 ERICH6Q7L0X2 663 aa24.3■■□□□ 1.48
VEGFA-205ENST00000372067 CTTNBP2Q8WZ74 1663 aa24.29■■□□□ 1.48
VEGFA-205ENST00000372067 CDK11AQ9UQ88 783 aaPredicted RBP24.29■■□□□ 1.48
VEGFA-205ENST00000372067 ABCA5Q8WWZ7 1642 aa24.28■■□□□ 1.48
VEGFA-205ENST00000372067 TONSLQ96HA7 1378 aa24.28■■□□□ 1.48
VEGFA-205ENST00000372067 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
VEGFA-205ENST00000372067 NCOA2Q15596 1464 aa24.24■■□□□ 1.47
VEGFA-205ENST00000372067 TSHZ2Q9NRE2 1034 aa24.22■■□□□ 1.47
VEGFA-205ENST00000372067 IFT140Q96RY7 1462 aa24.21■■□□□ 1.47
VEGFA-205ENST00000372067 SNAPC4Q5SXM2 1469 aa24.19■■□□□ 1.46
VEGFA-205ENST00000372067 MYOM3Q5VTT5 1437 aa24.18■■□□□ 1.46
VEGFA-205ENST00000372067 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
VEGFA-205ENST00000372067 CFAP43Q8NDM7 1665 aa24.17■■□□□ 1.46
VEGFA-205ENST00000372067 WDR97A6NE52 1622 aa24.16■■□□□ 1.46
VEGFA-205ENST00000372067 IQGAP2Q13576 1575 aa24.15■■□□□ 1.46
VEGFA-205ENST00000372067 CDK13Q14004 1512 aaKnown RBP24.12■■□□□ 1.45
VEGFA-205ENST00000372067 CCDC18Q5T9S5 1454 aa24.12■■□□□ 1.45
VEGFA-205ENST00000372067 JPH4Q96JJ6 628 aa24.11■■□□□ 1.45
VEGFA-205ENST00000372067 FOXD1Q16676 465 aa24.11■■□□□ 1.45
VEGFA-205ENST00000372067 CFDP1Q9UEE9 299 aaPredicted RBP24.1■■□□□ 1.45
VEGFA-205ENST00000372067 ZNF644Q9H582 1327 aaPredicted RBP24.08■■□□□ 1.45
VEGFA-205ENST00000372067 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
VEGFA-205ENST00000372067 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
VEGFA-205ENST00000372067 PTPRKQ15262 1439 aa24.06■■□□□ 1.44
VEGFA-205ENST00000372067 ADAMTS12P58397 1594 aa24.05■■□□□ 1.44
VEGFA-205ENST00000372067 MAPKBP1O60336 1514 aa24.05■■□□□ 1.44
VEGFA-205ENST00000372067 EPRSP07814 1512 aaKnown RBP24.05■■□□□ 1.44
VEGFA-205ENST00000372067 EHBP1L1Q8N3D4 1523 aa24.05■■□□□ 1.44
VEGFA-205ENST00000372067 SAMD9Q5K651 1589 aa24.05■■□□□ 1.44
VEGFA-205ENST00000372067 PLEKHD1A6NEE1 506 aa24.04■■□□□ 1.44
VEGFA-205ENST00000372067 SUPT6HQ7KZ85 1726 aaKnown RBP24.02■■□□□ 1.44
VEGFA-205ENST00000372067 ZNF326Q5BKZ1 582 aaKnown RBP24.01■■□□□ 1.43
VEGFA-205ENST00000372067 KIAA0586Q9BVV6 1533 aa24.01■■□□□ 1.43
VEGFA-205ENST00000372067 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.01■■□□□ 1.432e-7■■□□□ 14.3
VEGFA-205ENST00000372067 SLC4A1APQ9BWU0 796 aaKnown RBP24■■□□□ 1.43
VEGFA-205ENST00000372067 SUPT16HQ9Y5B9 1047 aaKnown RBP24■■□□□ 1.43
VEGFA-205ENST00000372067 HECW1Q76N89 1606 aa24■■□□□ 1.43
VEGFA-205ENST00000372067 GRIN2AQ12879 1464 aa23.99■■□□□ 1.43
VEGFA-205ENST00000372067 CNGB1Q14028 1251 aaPredicted RBP23.99■■□□□ 1.43
VEGFA-205ENST00000372067 CARMIL2Q6F5E8 1435 aa23.99■■□□□ 1.43
VEGFA-205ENST00000372067 POLR3GLQ9BT43 218 aa23.98■■□□□ 1.43
VEGFA-205ENST00000372067 TIMELESSQ9UNS1 1208 aa23.98■■□□□ 1.43
VEGFA-205ENST00000372067 ANP32CO43423 234 aa23.98■■□□□ 1.43
VEGFA-205ENST00000372067 HFM1A2PYH4 1435 aa23.96■■□□□ 1.43
VEGFA-205ENST00000372067 MPHOSPH9Q99550 1183 aa23.96■■□□□ 1.43
VEGFA-205ENST00000372067 NAIPQ13075 1403 aa23.96■■□□□ 1.43
VEGFA-205ENST00000372067 UACAQ9BZF9 1416 aa23.95■■□□□ 1.42
VEGFA-205ENST00000372067 KCNH8Q96L42 1107 aa23.94■■□□□ 1.42
VEGFA-205ENST00000372067 WDR62O43379 1518 aa23.94■■□□□ 1.42
VEGFA-205ENST00000372067 PTPN23Q9H3S7 1636 aa23.92■■□□□ 1.42
VEGFA-205ENST00000372067 MAGI3Q5TCQ9 1506 aa23.92■■□□□ 1.42
VEGFA-205ENST00000372067 THOC2Q8NI27 1593 aaKnown RBP23.92■■□□□ 1.42
VEGFA-205ENST00000372067 EIF4G3O43432 1585 aaKnown RBP23.91■■□□□ 1.42
VEGFA-205ENST00000372067 PRG4Q92954 1404 aaPredicted RBP23.91■■□□□ 1.42
VEGFA-205ENST00000372067 ANO8Q9HCE9 1232 aaPredicted RBP23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms