RNA–Protein interactions for RNA: ENST00000371146.5

USP1-202, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP1, Length 3,507 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-202ENST00000371146 CHIC2Q9UKJ5 165 aa10.72□□□□□ -0.69
USP1-202ENST00000371146 IFT140Q96RY7 1462 aa10.72□□□□□ -0.69
USP1-202ENST00000371146 PEG3Q9GZU2 1588 aa10.72□□□□□ -0.69
USP1-202ENST00000371146 AEBP2Q6ZN18 517 aaPredicted RBP10.71□□□□□ -0.69
USP1-202ENST00000371146 SYNJ1O43426 1573 aa10.69□□□□□ -0.7
USP1-202ENST00000371146 GRIN2BQ13224 1484 aa10.68□□□□□ -0.7
USP1-202ENST00000371146 CDK11AQ9UQ88 783 aaPredicted RBP10.68□□□□□ -0.7
USP1-202ENST00000371146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.67□□□□□ -0.73e-7■■■□□ 16.5
USP1-202ENST00000371146 PCGF6Q9BYE7 350 aa10.67□□□□□ -0.7
USP1-202ENST00000371146 PTPRGP23470 1445 aa10.67□□□□□ -0.7
USP1-202ENST00000371146 PRG4Q92954 1404 aaPredicted RBP10.67□□□□□ -0.7
USP1-202ENST00000371146 ESF1Q9H501 851 aaKnown RBP10.67□□□□□ -0.7
USP1-202ENST00000371146 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
USP1-202ENST00000371146 FHOD3Q2V2M9 1422 aa10.62□□□□□ -0.71
USP1-202ENST00000371146 RAPGEF2Q9Y4G8 1499 aa10.62□□□□□ -0.71
USP1-202ENST00000371146 BCANQ96GW7 911 aa10.62□□□□□ -0.71
USP1-202ENST00000371146 CARMIL2Q6F5E8 1435 aa10.61□□□□□ -0.71
USP1-202ENST00000371146 TRIM52Q96A61 297 aa10.59□□□□□ -0.71
USP1-202ENST00000371146 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
USP1-202ENST00000371146 FHAD1B1AJZ9 1412 aa10.58□□□□□ -0.72
USP1-202ENST00000371146 MTUS2Q5JR59 1369 aa10.58□□□□□ -0.72
USP1-202ENST00000371146 CLIP1P30622 1438 aa10.58□□□□□ -0.72
USP1-202ENST00000371146 GGT6Q6P531 493 aa10.56□□□□□ -0.72
USP1-202ENST00000371146 CFDP1Q9UEE9 299 aaPredicted RBP10.56□□□□□ -0.72
USP1-202ENST00000371146 RAPGEF3O95398 923 aa10.55□□□□□ -0.72
USP1-202ENST00000371146 DAXXQ9UER7 740 aaPredicted RBP10.55□□□□□ -0.72
USP1-202ENST00000371146 WDR62O43379 1518 aa10.54□□□□□ -0.72
USP1-202ENST00000371146 RRP7BPQ9NSQ0 103 aa10.53□□□□□ -0.72
USP1-202ENST00000371146 HNRNPMP52272 730 aaKnown RBP eCLIP10.52□□□□□ -0.732e-9■■■■■ 36.1
USP1-202ENST00000371146 SYNJ2O15056 1496 aa10.52□□□□□ -0.73
USP1-202ENST00000371146 PLEKHG5O94827 1062 aa10.52□□□□□ -0.73
USP1-202ENST00000371146 KANK4Q5T7N3 995 aaPredicted RBP10.51□□□□□ -0.73
USP1-202ENST00000371146 THOC2Q8NI27 1593 aaKnown RBP10.5□□□□□ -0.73
USP1-202ENST00000371146 GRIN2AQ12879 1464 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 TSPY4P0CV99 314 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 TSPY10P0CW01 314 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 STAG3Q9UJ98 1225 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 ABCA10Q8WWZ4 1543 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 GOLGA3Q08378 1498 aa10.5□□□□□ -0.73
USP1-202ENST00000371146 EIF4G3O43432 1585 aaKnown RBP10.49□□□□□ -0.73
USP1-202ENST00000371146 CNGB1Q14028 1251 aaPredicted RBP10.49□□□□□ -0.73
USP1-202ENST00000371146 CEP162Q5TB80 1403 aa10.47□□□□□ -0.73
USP1-202ENST00000371146 TOP2BQ02880 1626 aa10.47□□□□□ -0.73
USP1-202ENST00000371146 ZNF326Q5BKZ1 582 aaKnown RBP10.47□□□□□ -0.73
USP1-202ENST00000371146 AFAP1Q8N556 730 aa10.47□□□□□ -0.73
USP1-202ENST00000371146 TNIKQ9UKE5 1360 aa10.45□□□□□ -0.74
USP1-202ENST00000371146 ZNF644Q9H582 1327 aaPredicted RBP10.45□□□□□ -0.74
USP1-202ENST00000371146 PLB1Q6P1J6 1458 aa10.44□□□□□ -0.74
USP1-202ENST00000371146 MAGI1Q96QZ7 1491 aaPredicted RBP10.44□□□□□ -0.74
USP1-202ENST00000371146 SCAF1Q9H7N4 1312 aaKnown RBP10.43□□□□□ -0.74
USP1-202ENST00000371146 BCL11AQ9H165 835 aa10.42□□□□□ -0.74
USP1-202ENST00000371146 EFCAB2Q5VUJ9 269 aa10.42□□□□□ -0.74
USP1-202ENST00000371146 EEA1Q15075 1411 aa10.41□□□□□ -0.74
USP1-202ENST00000371146 NEUROD1Q13562 356 aa10.41□□□□□ -0.74
USP1-202ENST00000371146 POLR3GLQ9BT43 218 aa10.41□□□□□ -0.74
USP1-202ENST00000371146 PRDM2Q13029 1718 aa10.4□□□□□ -0.74
USP1-202ENST00000371146 ARHGEF11O15085 1522 aa10.4□□□□□ -0.75
USP1-202ENST00000371146 NUTM2DQ5VT03 806 aaPredicted RBP10.38□□□□□ -0.75
USP1-202ENST00000371146 KIF3BO15066 747 aa10.38□□□□□ -0.75
USP1-202ENST00000371146 CEBPAP49715 358 aaPredicted RBP10.38□□□□□ -0.75
USP1-202ENST00000371146 CCNB3Q8WWL7 1395 aa10.38□□□□□ -0.75
USP1-202ENST00000371146 CCER1Q8TC90 406 aaPredicted RBP10.37□□□□□ -0.75
USP1-202ENST00000371146 KIAA0586Q9BVV6 1533 aa10.37□□□□□ -0.75
USP1-202ENST00000371146 ERCC6L2Q5T890 1561 aa10.36□□□□□ -0.75
USP1-202ENST00000371146 RGL3Q3MIN7 710 aa10.35□□□□□ -0.75
USP1-202ENST00000371146 HRCP23327 699 aa10.35□□□□□ -0.75
USP1-202ENST00000371146 SLC4A1APQ9BWU0 796 aaKnown RBP10.34□□□□□ -0.75
USP1-202ENST00000371146 TARBP1Q13395 1621 aaKnown RBP10.34□□□□□ -0.75
USP1-202ENST00000371146 UACAQ9BZF9 1416 aa10.33□□□□□ -0.76
USP1-202ENST00000371146 SPAG9O60271 1321 aaKnown RBP10.32□□□□□ -0.76
USP1-202ENST00000371146 FOXD1Q16676 465 aa10.31□□□□□ -0.76
USP1-202ENST00000371146 KDM2AQ9Y2K7 1162 aa10.31□□□□□ -0.76
USP1-202ENST00000371146 C14orf37Q86TY3 774 aa10.3□□□□□ -0.76
USP1-202ENST00000371146 ARAP1Q96P48 1450 aa10.3□□□□□ -0.76
USP1-202ENST00000371146 HSPA2P54652 639 aa10.3□□□□□ -0.76
USP1-202ENST00000371146 PRXQ9BXM0 1461 aa10.3□□□□□ -0.76
USP1-202ENST00000371146 CHD1O14646 1710 aa10.29□□□□□ -0.76
USP1-202ENST00000371146 FMN1Q68DA7 1419 aa10.29□□□□□ -0.76
USP1-202ENST00000371146 ERICH3Q5RHP9 1530 aa10.29□□□□□ -0.76
USP1-202ENST00000371146 PPP1R15AO75807 674 aaPredicted RBP10.29□□□□□ -0.76
USP1-202ENST00000371146 CD109Q6YHK3 1445 aa10.28□□□□□ -0.76
USP1-202ENST00000371146 ASXL2Q76L83 1435 aa10.28□□□□□ -0.76
USP1-202ENST00000371146 CDK13Q14004 1512 aaKnown RBP10.27□□□□□ -0.76
USP1-202ENST00000371146 IQGAP2Q13576 1575 aa10.27□□□□□ -0.77
USP1-202ENST00000371146 WASHC2CQ9Y4E1 1318 aa10.26□□□□□ -0.77
USP1-202ENST00000371146 CEP170Q5SW79 1584 aa10.26□□□□□ -0.77
USP1-202ENST00000371146 SCAPERQ9BY12 1400 aa10.25□□□□□ -0.77
USP1-202ENST00000371146 NUP160Q12769 1436 aa10.24□□□□□ -0.77
USP1-202ENST00000371146 ADAMTS12P58397 1594 aa10.24□□□□□ -0.77
USP1-202ENST00000371146 BIVM-ERCC5R4GMW8 1640 aa10.23□□□□□ -0.77
USP1-202ENST00000371146 ARHGAP35Q9NRY4 1499 aa10.23□□□□□ -0.77
USP1-202ENST00000371146 RBM33Q96EV2 1170 aaKnown RBP10.23□□□□□ -0.77
USP1-202ENST00000371146 SAFB2Q14151 953 aaKnown RBP eCLIP10.21□□□□□ -0.78
USP1-202ENST00000371146 NUTM2FA1L443 756 aa10.2□□□□□ -0.78
USP1-202ENST00000371146 RIMBP3CA6NJZ7 1639 aa10.2□□□□□ -0.78
USP1-202ENST00000371146 RIMBP3BA6NNM3 1639 aa10.2□□□□□ -0.78
USP1-202ENST00000371146 RIMBP3Q9UFD9 1639 aa10.2□□□□□ -0.78
USP1-202ENST00000371146 PBRM1Q86U86 1689 aa10.2□□□□□ -0.78
USP1-202ENST00000371146 TRIM26Q12899 539 aaPredicted RBP10.2□□□□□ -0.78
USP1-202ENST00000371146 TSPOAP1O95153 1857 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms