RNA–Protein interactions for RNA: ENST00000371146.5

USP1-202, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP1, Length 3,507 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-202ENST00000371146 NISCHQ9Y2I1 1504 aa14.74□□□□□ -0.05
USP1-202ENST00000371146 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
USP1-202ENST00000371146 ABCC9O60706 1549 aa13.44□□□□□ -0.26
USP1-202ENST00000371146 SHROOM4Q9ULL8 1493 aa13.21□□□□□ -0.29
USP1-202ENST00000371146 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP1-202ENST00000371146 SUPT5HO00267 1087 aaKnown RBP12.74□□□□□ -0.37
USP1-202ENST00000371146 CCDC180Q9P1Z9 1646 aa12.39□□□□□ -0.43
USP1-202ENST00000371146 EHMT2Q96KQ7 1210 aa12.33□□□□□ -0.44
USP1-202ENST00000371146 SCRIBQ14160 1630 aa12.3□□□□□ -0.44
USP1-202ENST00000371146 DNAJC5BQ9UF47 199 aa12.28□□□□□ -0.44
USP1-202ENST00000371146 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
USP1-202ENST00000371146 ZCCHC6Q5VYS8 1495 aaKnown RBP12.13□□□□□ -0.47
USP1-202ENST00000371146 NACADO15069 1562 aa12.02□□□□□ -0.48
USP1-202ENST00000371146 FAM9AQ8IZU1 332 aaPredicted RBP12.01□□□□□ -0.49
USP1-202ENST00000371146 RANGAP1P46060 587 aaPredicted RBP11.99□□□□□ -0.49
USP1-202ENST00000371146 TTBK1Q5TCY1 1321 aaPredicted RBP11.95□□□□□ -0.5
USP1-202ENST00000371146 FBLN2P98095 1184 aa11.87□□□□□ -0.51
USP1-202ENST00000371146 CECR2Q9BXF3 1484 aa11.87□□□□□ -0.51
USP1-202ENST00000371146 PELP1Q8IZL8 1130 aaKnown RBP11.73□□□□□ -0.53
USP1-202ENST00000371146 MYT1Q01538 1121 aa11.69□□□□□ -0.54
USP1-202ENST00000371146 TRIM41Q8WV44 630 aa11.68□□□□□ -0.54
USP1-202ENST00000371146 ERCC6Q03468 1493 aa11.66□□□□□ -0.54
USP1-202ENST00000371146 ATP1B4Q9UN42 357 aaPredicted RBP11.64□□□□□ -0.55
USP1-202ENST00000371146 DCAF1Q9Y4B6 1507 aa11.59□□□□□ -0.55
USP1-202ENST00000371146 BAZ1BQ9UIG0 1483 aaKnown RBP11.59□□□□□ -0.55
USP1-202ENST00000371146 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.56
USP1-202ENST00000371146 MROH2BQ7Z745 1585 aa11.57□□□□□ -0.56
USP1-202ENST00000371146 EIF4G1Q04637 1599 aaKnown RBP11.55□□□□□ -0.56
USP1-202ENST00000371146 RSF1Q96T23 1441 aaPredicted RBP11.54□□□□□ -0.56
USP1-202ENST00000371146 CC2D2AQ9P2K1 1620 aa11.54□□□□□ -0.56
USP1-202ENST00000371146 ARID3CA6NKF2 412 aa11.51□□□□□ -0.57
USP1-202ENST00000371146 UBTFP17480 764 aaKnown RBP11.49□□□□□ -0.57
USP1-202ENST00000371146 MYO15BQ96JP2 1530 aa11.49□□□□□ -0.57
USP1-202ENST00000371146 NESP48681 1621 aa11.47□□□□□ -0.57
USP1-202ENST00000371146 ATAD2BQ9ULI0 1458 aa11.46□□□□□ -0.58
USP1-202ENST00000371146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.45□□□□□ -0.58
USP1-202ENST00000371146 HNRNPUL2Q1KMD3 747 aaKnown RBP11.45□□□□□ -0.58
USP1-202ENST00000371146 UNC13AQ9UPW8 1703 aa11.45□□□□□ -0.58
USP1-202ENST00000371146 BAZ1AQ9NRL2 1556 aaPredicted RBP11.42□□□□□ -0.58
USP1-202ENST00000371146 P3H3Q8IVL6 736 aa11.42□□□□□ -0.58
USP1-202ENST00000371146 WIZO95785 1651 aa11.4□□□□□ -0.59
USP1-202ENST00000371146 CHMP7Q8WUX9 453 aaPredicted RBP11.38□□□□□ -0.59
USP1-202ENST00000371146 SMARCA2P51531 1590 aa11.36□□□□□ -0.59
USP1-202ENST00000371146 PPARGC1BQ86YN6 1023 aaKnown RBP11.36□□□□□ -0.59
USP1-202ENST00000371146 LOC105371045A0A1W2PR82 267 aa11.33□□□□□ -0.6
USP1-202ENST00000371146 TRHP20396 242 aaPredicted RBP11.33□□□□□ -0.6
USP1-202ENST00000371146 TDRD9Q8NDG6 1382 aaKnown RBP11.31□□□□□ -0.6
USP1-202ENST00000371146 CADPSQ9ULU8 1353 aa11.31□□□□□ -0.6
USP1-202ENST00000371146 SMARCA4P51532 1647 aa11.31□□□□□ -0.6
USP1-202ENST00000371146 CHIC1Q5VXU3 224 aa11.29□□□□□ -0.6
USP1-202ENST00000371146 CCDC88BA6NC98 1476 aa11.28□□□□□ -0.6
USP1-202ENST00000371146 PDS5BQ9NTI5 1447 aa11.28□□□□□ -0.6
USP1-202ENST00000371146 CYB5RLQ6IPT4 315 aa11.27□□□□□ -0.61
USP1-202ENST00000371146 MYT1LQ9UL68 1186 aa11.25□□□□□ -0.61
USP1-202ENST00000371146 NCAPD3P42695 1498 aa11.25□□□□□ -0.61
USP1-202ENST00000371146 PLPPR3Q6T4P5 718 aa11.23□□□□□ -0.61
USP1-202ENST00000371146 FANCD2Q9BXW9 1451 aa11.18□□□□□ -0.62
USP1-202ENST00000371146 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
USP1-202ENST00000371146 APLP2Q06481 763 aa11.14□□□□□ -0.63
USP1-202ENST00000371146 CEP164Q9UPV0 1460 aa11.13□□□□□ -0.63
USP1-202ENST00000371146 KCNH8Q96L42 1107 aa11.12□□□□□ -0.63
USP1-202ENST00000371146 AQRO60306 1485 aaKnown RBP eCLIP11.11□□□□□ -0.634e-6■■■□□ 18.8
USP1-202ENST00000371146 SOGA1O94964 1423 aa11.11□□□□□ -0.63
USP1-202ENST00000371146 ABCC8Q09428 1581 aa11.1□□□□□ -0.63
USP1-202ENST00000371146 RAD54L2Q9Y4B4 1467 aa11.1□□□□□ -0.63
USP1-202ENST00000371146 NPM1P06748 294 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP1-202ENST00000371146 WRNQ14191 1432 aaPredicted RBP eCLIP11.08□□□□□ -0.64
USP1-202ENST00000371146 CSRNP3Q8WYN3 585 aa11.08□□□□□ -0.64
USP1-202ENST00000371146 ITGAEP38570 1179 aa11.07□□□□□ -0.64
USP1-202ENST00000371146 TOP2AP11388 1531 aaKnown RBP11.05□□□□□ -0.64
USP1-202ENST00000371146 SLC24A1O60721 1099 aa11.04□□□□□ -0.64
USP1-202ENST00000371146 CUX2O14529 1486 aa11.04□□□□□ -0.64
USP1-202ENST00000371146 ZNF777Q9ULD5 760 aaPredicted RBP10.98□□□□□ -0.65
USP1-202ENST00000371146 CFTRP13569 1480 aa10.95□□□□□ -0.66
USP1-202ENST00000371146 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
USP1-202ENST00000371146 ZNF608Q9ULD9 1512 aaPredicted RBP10.94□□□□□ -0.66
USP1-202ENST00000371146 MRC2Q9UBG0 1479 aa10.93□□□□□ -0.66
USP1-202ENST00000371146 JPH4Q96JJ6 628 aa10.93□□□□□ -0.66
USP1-202ENST00000371146 FGD5Q6ZNL6 1462 aa10.92□□□□□ -0.66
USP1-202ENST00000371146 SENP3Q9H4L4 574 aaPredicted RBP10.91□□□□□ -0.66
USP1-202ENST00000371146 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
USP1-202ENST00000371146 CARMIL1Q5VZK9 1371 aa10.88□□□□□ -0.67
USP1-202ENST00000371146 PRKCSHP14314 528 aaPredicted RBP10.87□□□□□ -0.67
USP1-202ENST00000371146 KIF27Q86VH2 1401 aa10.87□□□□□ -0.67
USP1-202ENST00000371146 DNAJC5Q9H3Z4 198 aa10.87□□□□□ -0.67
USP1-202ENST00000371146 URB2Q14146 1524 aaKnown RBP10.87□□□□□ -0.67
USP1-202ENST00000371146 TOPBP1Q92547 1522 aa10.86□□□□□ -0.67
USP1-202ENST00000371146 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
USP1-202ENST00000371146 MLECQ14165 292 aa10.82□□□□□ -0.68
USP1-202ENST00000371146 LAMC3Q9Y6N6 1575 aa10.82□□□□□ -0.68
USP1-202ENST00000371146 ERICH6Q7L0X2 663 aa10.82□□□□□ -0.68
USP1-202ENST00000371146 GAPVD1Q14C86 1478 aa10.81□□□□□ -0.68
USP1-202ENST00000371146 ARID4BQ4LE39 1312 aaPredicted RBP10.81□□□□□ -0.68
USP1-202ENST00000371146 FAM50AQ14320 339 aaKnown RBP10.8□□□□□ -0.68
USP1-202ENST00000371146 FAM69CQ0P6D2 419 aa10.8□□□□□ -0.68
USP1-202ENST00000371146 KIF21AQ7Z4S6 1674 aa10.78□□□□□ -0.68
USP1-202ENST00000371146 SNAPC4Q5SXM2 1469 aa10.76□□□□□ -0.69
USP1-202ENST00000371146 CUX1P39880 1505 aa10.76□□□□□ -0.69
USP1-202ENST00000371146 IGF1RP08069 1367 aa10.74□□□□□ -0.69
USP1-202ENST00000371146 PLEKHD1A6NEE1 506 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms