RNA–Protein interactions for RNA: ENST00000359526.8

DNMT1-202, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene DNMT1, Length 5,206 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-202ENST00000359526 STAG3Q9UJ98 1225 aa16.51■□□□□ 0.23
DNMT1-202ENST00000359526 HNRNPUQ00839 825 aaKnown RBP eCLIP16.5■□□□□ 0.23
DNMT1-202ENST00000359526 ANP32EQ9BTT0 268 aa16.49■□□□□ 0.23
DNMT1-202ENST00000359526 DDX10Q13206 875 aaKnown RBP16.47■□□□□ 0.23
DNMT1-202ENST00000359526 CUX2O14529 1486 aa16.47■□□□□ 0.23
DNMT1-202ENST00000359526 CARMIL1Q5VZK9 1371 aa16.46■□□□□ 0.23
DNMT1-202ENST00000359526 UPF2Q9HAU5 1272 aaKnown RBP16.43■□□□□ 0.22
DNMT1-202ENST00000359526 SOGA1O94964 1423 aa16.42■□□□□ 0.22
DNMT1-202ENST00000359526 NBR1Q14596 966 aa16.42■□□□□ 0.22
DNMT1-202ENST00000359526 ANP32BQ92688 251 aaKnown RBP16.42■□□□□ 0.22
DNMT1-202ENST00000359526 CEP162Q5TB80 1403 aa16.41■□□□□ 0.22
DNMT1-202ENST00000359526 NCAPD3P42695 1498 aa16.4■□□□□ 0.22
DNMT1-202ENST00000359526 FAM9BQ8IZU0 186 aa16.39■□□□□ 0.21
DNMT1-202ENST00000359526 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.38■□□□□ 0.21
DNMT1-202ENST00000359526 ARID3CA6NKF2 412 aa16.38■□□□□ 0.21
DNMT1-202ENST00000359526 SLC24A1O60721 1099 aa16.38■□□□□ 0.21
DNMT1-202ENST00000359526 BCL11AQ9H165 835 aa16.37■□□□□ 0.21
DNMT1-202ENST00000359526 CCDC136Q96JN2 1154 aa16.36■□□□□ 0.21
DNMT1-202ENST00000359526 FMN1Q68DA7 1419 aa16.36■□□□□ 0.21
DNMT1-202ENST00000359526 MIER1Q8N108 512 aa16.34■□□□□ 0.21
DNMT1-202ENST00000359526 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
DNMT1-202ENST00000359526 HSP90AA1P07900 732 aaKnown RBP16.31■□□□□ 0.2
DNMT1-202ENST00000359526 EIF4G1Q04637 1599 aaKnown RBP16.3■□□□□ 0.2
DNMT1-202ENST00000359526 MRS2Q9HD23 443 aa16.3■□□□□ 0.2
DNMT1-202ENST00000359526 KANK1Q14678 1352 aa16.3■□□□□ 0.2
DNMT1-202ENST00000359526 CFDP1Q9UEE9 299 aaPredicted RBP16.3■□□□□ 0.2
DNMT1-202ENST00000359526 WIZO95785 1651 aa16.3■□□□□ 0.2
DNMT1-202ENST00000359526 CCNB3Q8WWL7 1395 aa16.29■□□□□ 0.2
DNMT1-202ENST00000359526 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
DNMT1-202ENST00000359526 FANCD2Q9BXW9 1451 aa16.29■□□□□ 0.2
DNMT1-202ENST00000359526 HDGFP51858 240 aaKnown RBP16.28■□□□□ 0.2
DNMT1-202ENST00000359526 RAPGEF2Q9Y4G8 1499 aa16.26■□□□□ 0.19
DNMT1-202ENST00000359526 CDCA8Q53HL2 280 aa16.26■□□□□ 0.19
DNMT1-202ENST00000359526 EIF4G2P78344 907 aaKnown RBP eCLIP16.25■□□□□ 0.19
DNMT1-202ENST00000359526 WDR43Q15061 677 aaKnown RBP eCLIP16.24■□□□□ 0.19
DNMT1-202ENST00000359526 CHGAP10645 457 aaKnown RBP16.24■□□□□ 0.19
DNMT1-202ENST00000359526 RSPH4AQ5TD94 716 aa16.22■□□□□ 0.19
DNMT1-202ENST00000359526 CHIC2Q9UKJ5 165 aa16.22■□□□□ 0.19
DNMT1-202ENST00000359526 DDRGK1Q96HY6 314 aa16.19■□□□□ 0.18
DNMT1-202ENST00000359526 KCNH8Q96L42 1107 aa16.17■□□□□ 0.18
DNMT1-202ENST00000359526 PPP1R15AO75807 674 aaPredicted RBP16.16■□□□□ 0.18
DNMT1-202ENST00000359526 SALL2Q9Y467 1007 aaPredicted RBP16.15■□□□□ 0.18
DNMT1-202ENST00000359526 ARHGAP35Q9NRY4 1499 aa16.15■□□□□ 0.18
DNMT1-202ENST00000359526 TIMELESSQ9UNS1 1208 aa16.15■□□□□ 0.18
DNMT1-202ENST00000359526 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.183e-7■■■■□ 23.2
DNMT1-202ENST00000359526 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
DNMT1-202ENST00000359526 ARXQ96QS3 562 aa16.14■□□□□ 0.17
DNMT1-202ENST00000359526 IRX6P78412 446 aaPredicted RBP16.14■□□□□ 0.17
DNMT1-202ENST00000359526 CCDC18Q5T9S5 1454 aa16.12■□□□□ 0.17
DNMT1-202ENST00000359526 BECN1Q14457 450 aa16.1■□□□□ 0.17
DNMT1-202ENST00000359526 EFCAB2Q5VUJ9 269 aa16.09■□□□□ 0.17
DNMT1-202ENST00000359526 ARID4BQ4LE39 1312 aaPredicted RBP16.08■□□□□ 0.17
DNMT1-202ENST00000359526 KDM2AQ9Y2K7 1162 aa16.08■□□□□ 0.17
DNMT1-202ENST00000359526 MRC2Q9UBG0 1479 aa16.07■□□□□ 0.16
DNMT1-202ENST00000359526 MYH16Q9H6N6 1097 aa16.05■□□□□ 0.16
DNMT1-202ENST00000359526 IFT140Q96RY7 1462 aa16.05■□□□□ 0.16
DNMT1-202ENST00000359526 TDRD9Q8NDG6 1382 aaKnown RBP16.04■□□□□ 0.16
DNMT1-202ENST00000359526 RRP7BPQ9NSQ0 103 aa16.04■□□□□ 0.16
DNMT1-202ENST00000359526 HIRIP3Q9BW71 556 aaPredicted RBP16.03■□□□□ 0.16
DNMT1-202ENST00000359526 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.16
DNMT1-202ENST00000359526 GAPVD1Q14C86 1478 aa16.02■□□□□ 0.15
DNMT1-202ENST00000359526 CFTRP13569 1480 aa16.01■□□□□ 0.15
DNMT1-202ENST00000359526 ANKRD30AQ9BXX3 1397 aa16.01■□□□□ 0.15
DNMT1-202ENST00000359526 PPM1GO15355 546 aaPredicted RBP16.01■□□□□ 0.15
DNMT1-202ENST00000359526 PPP4R2Q9NY27 417 aa16■□□□□ 0.15
DNMT1-202ENST00000359526 CC2D2AQ9P2K1 1620 aa15.99■□□□□ 0.15
DNMT1-202ENST00000359526 OSCARQ8IYS5 282 aa15.98■□□□□ 0.15
DNMT1-202ENST00000359526 GRIN2BQ13224 1484 aa15.98■□□□□ 0.15
DNMT1-202ENST00000359526 LAMC3Q9Y6N6 1575 aa15.98■□□□□ 0.15
DNMT1-202ENST00000359526 SUPT16HQ9Y5B9 1047 aaKnown RBP15.97■□□□□ 0.15
DNMT1-202ENST00000359526 FGD5Q6ZNL6 1462 aa15.97■□□□□ 0.15
DNMT1-202ENST00000359526 ERICH6BQ5W0A0 696 aa15.96■□□□□ 0.15
DNMT1-202ENST00000359526 CFAP53Q96M91 514 aa15.96■□□□□ 0.14
DNMT1-202ENST00000359526 GOLGA6L22H0YM25 854 aa15.95■□□□□ 0.14
DNMT1-202ENST00000359526 TRIM44Q96DX7 344 aaPredicted RBP15.95■□□□□ 0.14
DNMT1-202ENST00000359526 JPH4Q96JJ6 628 aa15.93■□□□□ 0.14
DNMT1-202ENST00000359526 PNNQ9H307 717 aaKnown RBP15.93■□□□□ 0.14
DNMT1-202ENST00000359526 DEKP35659 375 aaKnown RBP15.92■□□□□ 0.14
DNMT1-202ENST00000359526 PTPRGP23470 1445 aa15.92■□□□□ 0.14
DNMT1-202ENST00000359526 KNSTRNQ9Y448 316 aa15.91■□□□□ 0.14
DNMT1-202ENST00000359526 NCLP19338 710 aaKnown RBP15.91■□□□□ 0.14
DNMT1-202ENST00000359526 CCER2I3L3R5 266 aa15.91■□□□□ 0.14
DNMT1-202ENST00000359526 ERICH3Q5RHP9 1530 aa15.9■□□□□ 0.14
DNMT1-202ENST00000359526 TRHP20396 242 aaPredicted RBP15.9■□□□□ 0.14
DNMT1-202ENST00000359526 SETD5Q9C0A6 1442 aa15.89■□□□□ 0.13
DNMT1-202ENST00000359526 CARD11Q9BXL7 1154 aa15.89■□□□□ 0.13
DNMT1-202ENST00000359526 NOP58Q9Y2X3 529 aaKnown RBP15.89■□□□□ 0.13
DNMT1-202ENST00000359526 CUX1P39880 1505 aa15.89■□□□□ 0.13
DNMT1-202ENST00000359526 TNNT2P45379 298 aaPredicted RBP15.88■□□□□ 0.13
DNMT1-202ENST00000359526 C14orf37Q86TY3 774 aa15.88■□□□□ 0.13
DNMT1-202ENST00000359526 DNMBPQ6XZF7 1577 aa15.87■□□□□ 0.13
DNMT1-202ENST00000359526 UACAQ9BZF9 1416 aa15.86■□□□□ 0.13
DNMT1-202ENST00000359526 EFCAB5A4FU69 1503 aa15.86■□□□□ 0.13
DNMT1-202ENST00000359526 NAP1L5Q96NT1 182 aaPredicted RBP15.85■□□□□ 0.13
DNMT1-202ENST00000359526 EIF3AQ14152 1382 aaKnown RBP15.85■□□□□ 0.13
DNMT1-202ENST00000359526 PEG3Q9GZU2 1588 aa15.84■□□□□ 0.13
DNMT1-202ENST00000359526 LAS1LQ9Y4W2 734 aaKnown RBP15.84■□□□□ 0.13
DNMT1-202ENST00000359526 CASC1Q6TDU7 716 aa15.83■□□□□ 0.12
DNMT1-202ENST00000359526 CHMP4BQ9H444 224 aaKnown RBP15.83■□□□□ 0.12
DNMT1-202ENST00000359526 SIN3AQ96ST3 1273 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms