RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 NBR1Q14596 966 aa14.05□□□□□ -0.16
RNF40-202ENST00000357890 CARMIL1Q5VZK9 1371 aa14.05□□□□□ -0.16
RNF40-202ENST00000357890 CUX1P39880 1505 aa14.05□□□□□ -0.16
RNF40-202ENST00000357890 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
RNF40-202ENST00000357890 DHX57Q6P158 1386 aaKnown RBP14.04□□□□□ -0.16
RNF40-202ENST00000357890 FANCD2Q9BXW9 1451 aa14.04□□□□□ -0.16
RNF40-202ENST00000357890 ARAP1Q96P48 1450 aa14.04□□□□□ -0.16
RNF40-202ENST00000357890 RBM19Q9Y4C8 960 aaKnown RBP14.04□□□□□ -0.16
RNF40-202ENST00000357890 IRX6P78412 446 aaPredicted RBP14.03□□□□□ -0.16
RNF40-202ENST00000357890 BIVM-ERCC5R4GMW8 1640 aa14.02□□□□□ -0.16
RNF40-202ENST00000357890 RTL5Q5HYW3 569 aaPredicted RBP14.02□□□□□ -0.17
RNF40-202ENST00000357890 LAMC3Q9Y6N6 1575 aa14.01□□□□□ -0.17
RNF40-202ENST00000357890 HIRIP3Q9BW71 556 aaPredicted RBP14□□□□□ -0.17
RNF40-202ENST00000357890 IGF1RP08069 1367 aa13.99□□□□□ -0.17
RNF40-202ENST00000357890 ERCC6Q03468 1493 aa13.98□□□□□ -0.17
RNF40-202ENST00000357890 NESP48681 1621 aa13.98□□□□□ -0.17
RNF40-202ENST00000357890 CNGB1Q14028 1251 aaPredicted RBP13.97□□□□□ -0.17
RNF40-202ENST00000357890 PRKCSHP14314 528 aaPredicted RBP13.97□□□□□ -0.17
RNF40-202ENST00000357890 FHAD1B1AJZ9 1412 aa13.96□□□□□ -0.17
RNF40-202ENST00000357890 ARHGAP35Q9NRY4 1499 aa13.96□□□□□ -0.17
RNF40-202ENST00000357890 RRBP1Q9P2E9 1410 aaKnown RBP13.95□□□□□ -0.18
RNF40-202ENST00000357890 ANP32CO43423 234 aa13.95□□□□□ -0.18
RNF40-202ENST00000357890 SIN3AQ96ST3 1273 aa13.93□□□□□ -0.18
RNF40-202ENST00000357890 RAB3GAP2Q9H2M9 1393 aa13.92□□□□□ -0.18
RNF40-202ENST00000357890 RTN4Q9NQC3 1192 aaKnown RBP13.92□□□□□ -0.18
RNF40-202ENST00000357890 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
RNF40-202ENST00000357890 FGD5Q6ZNL6 1462 aa13.91□□□□□ -0.18
RNF40-202ENST00000357890 EIF5BO60841 1220 aaKnown RBP13.91□□□□□ -0.18
RNF40-202ENST00000357890 SETD5Q9C0A6 1442 aa13.9□□□□□ -0.18
RNF40-202ENST00000357890 DEKP35659 375 aaKnown RBP13.88□□□□□ -0.19
RNF40-202ENST00000357890 MTUS2Q5JR59 1369 aa13.86□□□□□ -0.19
RNF40-202ENST00000357890 LRRC9Q6ZRR7 1453 aa13.82□□□□□ -0.2
RNF40-202ENST00000357890 FHOD3Q2V2M9 1422 aa13.82□□□□□ -0.2
RNF40-202ENST00000357890 PRDM2Q13029 1718 aa13.82□□□□□ -0.2
RNF40-202ENST00000357890 HNRNPUQ00839 825 aaKnown RBP eCLIP13.82□□□□□ -0.2
RNF40-202ENST00000357890 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
RNF40-202ENST00000357890 TONSLQ96HA7 1378 aa13.81□□□□□ -0.2
RNF40-202ENST00000357890 DNMBPQ6XZF7 1577 aa13.81□□□□□ -0.2
RNF40-202ENST00000357890 CCDC136Q96JN2 1154 aa13.81□□□□□ -0.2
RNF40-202ENST00000357890 TOPBP1Q92547 1522 aa13.81□□□□□ -0.2
RNF40-202ENST00000357890 TIMELESSQ9UNS1 1208 aa13.81□□□□□ -0.2
RNF40-202ENST00000357890 PHLDB1Q86UU1 1377 aa13.8□□□□□ -0.2
RNF40-202ENST00000357890 TIAM1Q13009 1591 aa13.79□□□□□ -0.2
RNF40-202ENST00000357890 NPM2Q86SE8 214 aaKnown RBP13.78□□□□□ -0.2
RNF40-202ENST00000357890 POLR3GLQ9BT43 218 aa13.78□□□□□ -0.2
RNF40-202ENST00000357890 RAD54L2Q9Y4B4 1467 aa13.78□□□□□ -0.2
RNF40-202ENST00000357890 FMN1Q68DA7 1419 aa13.77□□□□□ -0.2
RNF40-202ENST00000357890 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.77□□□□□ -0.2
RNF40-202ENST00000357890 MAP3K1Q13233 1512 aa13.77□□□□□ -0.21
RNF40-202ENST00000357890 ARID3CA6NKF2 412 aa13.77□□□□□ -0.21
RNF40-202ENST00000357890 ANO8Q9HCE9 1232 aaPredicted RBP13.76□□□□□ -0.21
RNF40-202ENST00000357890 MYT1LQ9UL68 1186 aa13.75□□□□□ -0.21
RNF40-202ENST00000357890 TDRD9Q8NDG6 1382 aaKnown RBP13.74□□□□□ -0.21
RNF40-202ENST00000357890 CHIC2Q9UKJ5 165 aa13.73□□□□□ -0.21
RNF40-202ENST00000357890 URB2Q14146 1524 aaKnown RBP13.73□□□□□ -0.21
RNF40-202ENST00000357890 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
RNF40-202ENST00000357890 ANP32AP39687 249 aaKnown RBP13.73□□□□□ -0.21
RNF40-202ENST00000357890 PPP1R15AO75807 674 aaPredicted RBP13.71□□□□□ -0.21
RNF40-202ENST00000357890 CASKIN1Q8WXD9 1431 aa13.7□□□□□ -0.22
RNF40-202ENST00000357890 FYCO1Q9BQS8 1478 aa13.69□□□□□ -0.22
RNF40-202ENST00000357890 ABCA10Q8WWZ4 1543 aa13.68□□□□□ -0.22
RNF40-202ENST00000357890 EFCAB5A4FU69 1503 aa13.68□□□□□ -0.22
RNF40-202ENST00000357890 RRP7BPQ9NSQ0 103 aa13.67□□□□□ -0.22
RNF40-202ENST00000357890 DAXXQ9UER7 740 aaPredicted RBP13.67□□□□□ -0.22
RNF40-202ENST00000357890 KIF21AQ7Z4S6 1674 aa13.67□□□□□ -0.22
RNF40-202ENST00000357890 IFT140Q96RY7 1462 aa13.66□□□□□ -0.22
RNF40-202ENST00000357890 MSH5O43196 834 aa13.66□□□□□ -0.22
RNF40-202ENST00000357890 ZBTB47Q9UFB7 747 aaPredicted RBP13.66□□□□□ -0.22
RNF40-202ENST00000357890 PCF11O94913 1555 aaKnown RBP13.66□□□□□ -0.22
RNF40-202ENST00000357890 B4GALNT3Q6L9W6 998 aa13.66□□□□□ -0.22
RNF40-202ENST00000357890 FGD6Q6ZV73 1430 aa13.65□□□□□ -0.22
RNF40-202ENST00000357890 FAM9BQ8IZU0 186 aa13.65□□□□□ -0.22
RNF40-202ENST00000357890 SENP3-EIF4A1A0A087X0R7 540 aa13.64□□□□□ -0.23
RNF40-202ENST00000357890 NOP58Q9Y2X3 529 aaKnown RBP13.64□□□□□ -0.23
RNF40-202ENST00000357890 GAPVD1Q14C86 1478 aa13.64□□□□□ -0.23
RNF40-202ENST00000357890 FBLN2P98095 1184 aa13.63□□□□□ -0.23
RNF40-202ENST00000357890 ZNF326Q5BKZ1 582 aaKnown RBP13.63□□□□□ -0.23
RNF40-202ENST00000357890 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.63□□□□□ -0.23
RNF40-202ENST00000357890 MAPKBP1O60336 1514 aa13.62□□□□□ -0.23
RNF40-202ENST00000357890 AQRO60306 1485 aaKnown RBP eCLIP13.62□□□□□ -0.232e-7■■■■□ 25.2
RNF40-202ENST00000357890 CCER2I3L3R5 266 aa13.61□□□□□ -0.23
RNF40-202ENST00000357890 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
RNF40-202ENST00000357890 CCDC18Q5T9S5 1454 aa13.6□□□□□ -0.23
RNF40-202ENST00000357890 SALL2Q9Y467 1007 aaPredicted RBP13.6□□□□□ -0.23
RNF40-202ENST00000357890 WDR62O43379 1518 aa13.6□□□□□ -0.23
RNF40-202ENST00000357890 WDR97A6NE52 1622 aa13.58□□□□□ -0.23
RNF40-202ENST00000357890 LAS1LQ9Y4W2 734 aaKnown RBP13.58□□□□□ -0.23
RNF40-202ENST00000357890 CUL7Q14999 1698 aa13.58□□□□□ -0.24
RNF40-202ENST00000357890 MYOM3Q5VTT5 1437 aa13.57□□□□□ -0.24
RNF40-202ENST00000357890 EIF4G2P78344 907 aaKnown RBP eCLIP13.57□□□□□ -0.24
RNF40-202ENST00000357890 UACAQ9BZF9 1416 aa13.57□□□□□ -0.24
RNF40-202ENST00000357890 GRIN2BQ13224 1484 aa13.56□□□□□ -0.24
RNF40-202ENST00000357890 MRS2Q9HD23 443 aa13.56□□□□□ -0.24
RNF40-202ENST00000357890 NCOA2Q15596 1464 aa13.56□□□□□ -0.24
RNF40-202ENST00000357890 CFAP43Q8NDM7 1665 aa13.54□□□□□ -0.24
RNF40-202ENST00000357890 HFM1A2PYH4 1435 aa13.54□□□□□ -0.24
RNF40-202ENST00000357890 PPP4R2Q9NY27 417 aa13.52□□□□□ -0.25
RNF40-202ENST00000357890 FANCIQ9NVI1 1328 aa13.52□□□□□ -0.25
RNF40-202ENST00000357890 HSPA5P11021 654 aaKnown RBP13.5□□□□□ -0.25
RNF40-202ENST00000357890 FOXD1Q16676 465 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms