RNA–Protein interactions for RNA: ENST00000355086.7

SRGAP1-201, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRGAP1, Length 23,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-201ENST00000355086 KDM2AQ9Y2K7 1162 aa7.62□□□□□ -1.19
SRGAP1-201ENST00000355086 NCBP3Q53F19 620 aaKnown RBP7.62□□□□□ -1.19
SRGAP1-201ENST00000355086 HAP1P54257 671 aaPredicted RBP7.62□□□□□ -1.19
SRGAP1-201ENST00000355086 TPRNQ4KMQ1 711 aa7.62□□□□□ -1.19
SRGAP1-201ENST00000355086 CASC1Q6TDU7 716 aa7.61□□□□□ -1.19
SRGAP1-201ENST00000355086 NPHP1O15259 732 aa7.6□□□□□ -1.19
SRGAP1-201ENST00000355086 MRS2Q9HD23 443 aa7.59□□□□□ -1.19
SRGAP1-201ENST00000355086 SENP3Q9H4L4 574 aaPredicted RBP7.58□□□□□ -1.2
SRGAP1-201ENST00000355086 TAOK2Q9UL54 1235 aa7.58□□□□□ -1.2
SRGAP1-201ENST00000355086 PPP1R15AO75807 674 aaPredicted RBP7.58□□□□□ -1.2
SRGAP1-201ENST00000355086 CHIC2Q9UKJ5 165 aa7.57□□□□□ -1.2
SRGAP1-201ENST00000355086 IRX6P78412 446 aaPredicted RBP7.57□□□□□ -1.2
SRGAP1-201ENST00000355086 FTSJ3Q8IY81 847 aaKnown RBP7.57□□□□□ -1.2
SRGAP1-201ENST00000355086 TSPY4P0CV99 314 aa7.56□□□□□ -1.2
SRGAP1-201ENST00000355086 TSPY10P0CW01 314 aa7.56□□□□□ -1.2
SRGAP1-201ENST00000355086 PLCB2Q00722 1185 aa7.56□□□□□ -1.2
SRGAP1-201ENST00000355086 GOLGA6L6A8MZA4 724 aa7.56□□□□□ -1.2
SRGAP1-201ENST00000355086 CSRNP3Q8WYN3 585 aa7.56□□□□□ -1.2
SRGAP1-201ENST00000355086 CLSTN1O94985 981 aa7.55□□□□□ -1.2
SRGAP1-201ENST00000355086 FGD1P98174 961 aa7.55□□□□□ -1.2
SRGAP1-201ENST00000355086 NRDCO43847 1150 aa7.54□□□□□ -1.2
SRGAP1-201ENST00000355086 GOLGA2Q08379 1002 aa7.54□□□□□ -1.2
SRGAP1-201ENST00000355086 ABCC9O60706 1549 aa7.53□□□□□ -1.2
SRGAP1-201ENST00000355086 NAP1L2Q9ULW6 460 aaPredicted RBP7.53□□□□□ -1.2
SRGAP1-201ENST00000355086 PPM1GO15355 546 aaPredicted RBP7.52□□□□□ -1.21
SRGAP1-201ENST00000355086 LAS1LQ9Y4W2 734 aaKnown RBP7.52□□□□□ -1.21
SRGAP1-201ENST00000355086 NAP1L5Q96NT1 182 aaPredicted RBP7.52□□□□□ -1.21
SRGAP1-201ENST00000355086 CFAP53Q96M91 514 aa7.52□□□□□ -1.21
SRGAP1-201ENST00000355086 KCNJ4P48050 445 aa7.51□□□□□ -1.21
SRGAP1-201ENST00000355086 ERICH6BQ5W0A0 696 aa7.5□□□□□ -1.21
SRGAP1-201ENST00000355086 ARID4BQ4LE39 1312 aaPredicted RBP7.5□□□□□ -1.21
SRGAP1-201ENST00000355086 OS9Q13438 667 aaPredicted RBP7.5□□□□□ -1.21
SRGAP1-201ENST00000355086 HSP90AB1P08238 724 aaKnown RBP7.49□□□□□ -1.21
SRGAP1-201ENST00000355086 EIF4G2P78344 907 aaKnown RBP eCLIP7.48□□□□□ -1.21
SRGAP1-201ENST00000355086 LMOD2Q6P5Q4 547 aa7.48□□□□□ -1.21
SRGAP1-201ENST00000355086 ISY1Q9ULR0 285 aaKnown RBP7.48□□□□□ -1.21
SRGAP1-201ENST00000355086 CHAF1AQ13111 956 aaPredicted RBP7.48□□□□□ -1.21
SRGAP1-201ENST00000355086 HIRIP3Q9BW71 556 aaPredicted RBP7.48□□□□□ -1.21
SRGAP1-201ENST00000355086 GOLGA6L4A6NEF3 574 aa7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 PRM3Q9NNZ6 103 aa7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 L1TD1Q5T7N2 865 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 RGL3Q3MIN7 710 aa7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 CDCA8Q53HL2 280 aa7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 KNSTRNQ9Y448 316 aa7.47□□□□□ -1.21
SRGAP1-201ENST00000355086 MAPK8IP3Q9UPT6 1336 aa7.46□□□□□ -1.21
SRGAP1-201ENST00000355086 KIAA2012Q0VF49 1180 aa7.46□□□□□ -1.22
SRGAP1-201ENST00000355086 MTUS2Q5JR59 1369 aa7.45□□□□□ -1.22
SRGAP1-201ENST00000355086 CHMP7Q8WUX9 453 aaPredicted RBP7.45□□□□□ -1.22
SRGAP1-201ENST00000355086 KCNH8Q96L42 1107 aa7.45□□□□□ -1.22
SRGAP1-201ENST00000355086 PNNQ9H307 717 aaKnown RBP7.45□□□□□ -1.22
SRGAP1-201ENST00000355086 DRC7Q8IY82 874 aa7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 NEUROD2Q15784 382 aa7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 NOC3LQ8WTT2 800 aaKnown RBP7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 CHMP4BQ9H444 224 aaKnown RBP7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 NUDCQ9Y266 331 aa7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 AMER1Q5JTC6 1135 aaPredicted RBP7.44□□□□□ -1.22
SRGAP1-201ENST00000355086 SENP3-EIF4A1A0A087X0R7 540 aa7.43□□□□□ -1.22
SRGAP1-201ENST00000355086 RRP7BPQ9NSQ0 103 aa7.43□□□□□ -1.22
SRGAP1-201ENST00000355086 RTN4Q9NQC3 1192 aaKnown RBP7.43□□□□□ -1.22
SRGAP1-201ENST00000355086 RGS3P49796 1198 aa7.43□□□□□ -1.22
SRGAP1-201ENST00000355086 FRAT1Q92837 279 aaPredicted RBP7.42□□□□□ -1.22
SRGAP1-201ENST00000355086 MSNP26038 577 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-201ENST00000355086 GNL2Q13823 731 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-201ENST00000355086 HSCBQ8IWL3 235 aa7.42□□□□□ -1.22
SRGAP1-201ENST00000355086 MCCP23508 829 aa7.41□□□□□ -1.22
SRGAP1-201ENST00000355086 POGKQ9P215 609 aa7.41□□□□□ -1.22
SRGAP1-201ENST00000355086 SUPT16HQ9Y5B9 1047 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-201ENST00000355086 MS4A1P11836 297 aa7.41□□□□□ -1.22
SRGAP1-201ENST00000355086 U2SURPO15042 1029 aaKnown RBP7.4□□□□□ -1.22
SRGAP1-201ENST00000355086 MIER1Q8N108 512 aa7.4□□□□□ -1.22
SRGAP1-201ENST00000355086 CARD11Q9BXL7 1154 aa7.38□□□□□ -1.23
SRGAP1-201ENST00000355086 PLEKHD1A6NEE1 506 aa7.37□□□□□ -1.23
SRGAP1-201ENST00000355086 NOP58Q9Y2X3 529 aaKnown RBP7.37□□□□□ -1.23
SRGAP1-201ENST00000355086 A0A0U1RQG5 324 aaPredicted RBP7.37□□□□□ -1.23
SRGAP1-201ENST00000355086 CFAP44Q96MT7 982 aa7.36□□□□□ -1.23
SRGAP1-201ENST00000355086 TMX4Q9H1E5 349 aaPredicted RBP7.36□□□□□ -1.23
SRGAP1-201ENST00000355086 KIAA1211Q6ZU35 1233 aa7.36□□□□□ -1.23
SRGAP1-201ENST00000355086 SOX12O15370 315 aa7.35□□□□□ -1.23
SRGAP1-201ENST00000355086 CC2D1BQ5T0F9 858 aaKnown RBP7.35□□□□□ -1.23
SRGAP1-201ENST00000355086 RTF1Q92541 710 aaKnown RBP7.35□□□□□ -1.23
SRGAP1-201ENST00000355086 SPRYD3Q8NCJ5 442 aa7.35□□□□□ -1.23
SRGAP1-201ENST00000355086 PDE4CQ08493 712 aa7.35□□□□□ -1.23
SRGAP1-201ENST00000355086 RSF1Q96T23 1441 aaPredicted RBP7.34□□□□□ -1.23
SRGAP1-201ENST00000355086 PPP4R2Q9NY27 417 aa7.33□□□□□ -1.24
SRGAP1-201ENST00000355086 TPM4P67936 248 aa7.33□□□□□ -1.24
SRGAP1-201ENST00000355086 TNNT3P45378 269 aaPredicted RBP7.33□□□□□ -1.24
SRGAP1-201ENST00000355086 GOLGA6L1Q8N7Z2 621 aa7.32□□□□□ -1.24
SRGAP1-201ENST00000355086 HTATSF1O43719 755 aaKnown RBP7.32□□□□□ -1.24
SRGAP1-201ENST00000355086 HDGFP51858 240 aaKnown RBP7.32□□□□□ -1.24
SRGAP1-201ENST00000355086 CCDC34Q96HJ3 373 aa7.32□□□□□ -1.24
SRGAP1-201ENST00000355086 CFDP1Q9UEE9 299 aaPredicted RBP7.32□□□□□ -1.24
SRGAP1-201ENST00000355086 APBB1O00213 710 aa7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 ARID3AQ99856 593 aa7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 PTMSP20962 102 aa7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 SRPK2P78362 688 aaKnown RBP7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 ZNF330Q9Y3S2 320 aaPredicted RBP7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 TAF7LQ5H9L4 462 aa7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 GBP4Q96PP9 640 aa7.31□□□□□ -1.24
SRGAP1-201ENST00000355086 CEP89Q96ST8 783 aa7.3□□□□□ -1.24
SRGAP1-201ENST00000355086 GPATCH3Q96I76 525 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms