RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 IGF1RP08069 1367 aa25.32■■□□□ 1.64
PRPF40A-201ENST00000354363 CUL7Q14999 1698 aa25.31■■□□□ 1.64
PRPF40A-201ENST00000354363 KIAA0586Q9BVV6 1533 aa25.23■■□□□ 1.63
PRPF40A-201ENST00000354363 KIF13AQ9H1H9 1805 aa25.22■■□□□ 1.63
PRPF40A-201ENST00000354363 CARMIL1Q5VZK9 1371 aa25.15■■□□□ 1.62
PRPF40A-201ENST00000354363 ADCY10Q96PN6 1610 aa25.12■■□□□ 1.61
PRPF40A-201ENST00000354363 MAPKBP1O60336 1514 aa25.07■■□□□ 1.6
PRPF40A-201ENST00000354363 NPM1P06748 294 aaKnown RBP eCLIP25.06■■□□□ 1.6
PRPF40A-201ENST00000354363 ABCC10Q5T3U5 1492 aa25.03■■□□□ 1.6
PRPF40A-201ENST00000354363 IQGAP2Q13576 1575 aa25.01■■□□□ 1.59
PRPF40A-201ENST00000354363 DIP2BQ9P265 1576 aa25■■□□□ 1.59
PRPF40A-201ENST00000354363 FAM69CQ0P6D2 419 aa24.99■■□□□ 1.59
PRPF40A-201ENST00000354363 PTPRGP23470 1445 aa24.98■■□□□ 1.59
PRPF40A-201ENST00000354363 CARMIL2Q6F5E8 1435 aa24.96■■□□□ 1.59
PRPF40A-201ENST00000354363 TNIKQ9UKE5 1360 aa24.94■■□□□ 1.58
PRPF40A-201ENST00000354363 RAPGEF2Q9Y4G8 1499 aa24.93■■□□□ 1.58
PRPF40A-201ENST00000354363 AEBP2Q6ZN18 517 aaPredicted RBP24.91■■□□□ 1.58
PRPF40A-201ENST00000354363 TTBK1Q5TCY1 1321 aaPredicted RBP24.91■■□□□ 1.58
PRPF40A-201ENST00000354363 TSPOAP1O95153 1857 aa24.88■■□□□ 1.57
PRPF40A-201ENST00000354363 DISP1Q96F81 1524 aa24.88■■□□□ 1.57
PRPF40A-201ENST00000354363 ABCC2Q92887 1545 aa24.86■■□□□ 1.57
PRPF40A-201ENST00000354363 UGGT2Q9NYU1 1516 aa24.85■■□□□ 1.57
PRPF40A-201ENST00000354363 UHRF1BP1LA0JNW5 1464 aa24.82■■□□□ 1.56
PRPF40A-201ENST00000354363 CTTNBP2Q8WZ74 1663 aa24.8■■□□□ 1.56
PRPF40A-201ENST00000354363 UACAQ9BZF9 1416 aa24.8■■□□□ 1.56
PRPF40A-201ENST00000354363 KIAA0556O60303 1618 aa24.79■■□□□ 1.56
PRPF40A-201ENST00000354363 ASXL2Q76L83 1435 aa24.77■■□□□ 1.56
PRPF40A-201ENST00000354363 KDM6BO15054 1643 aa24.77■■□□□ 1.56
PRPF40A-201ENST00000354363 PLB1Q6P1J6 1458 aa24.75■■□□□ 1.55
PRPF40A-201ENST00000354363 GLI2P10070 1586 aa24.72■■□□□ 1.55
PRPF40A-201ENST00000354363 KDM5BQ9UGL1 1544 aa24.71■■□□□ 1.55
PRPF40A-201ENST00000354363 PPRC1Q5VV67 1664 aaKnown RBP24.7■■□□□ 1.54
PRPF40A-201ENST00000354363 ZCCHC11Q5TAX3 1644 aaKnown RBP24.69■■□□□ 1.54
PRPF40A-201ENST00000354363 PRXQ9BXM0 1461 aa24.69■■□□□ 1.54
PRPF40A-201ENST00000354363 GOLGA3Q08378 1498 aa24.63■■□□□ 1.53
PRPF40A-201ENST00000354363 EPRSP07814 1512 aaKnown RBP24.63■■□□□ 1.53
PRPF40A-201ENST00000354363 MAP3K4Q9Y6R4 1608 aa24.6■■□□□ 1.53
PRPF40A-201ENST00000354363 ABCA8O94911 1581 aa24.56■■□□□ 1.52
PRPF40A-201ENST00000354363 WDR7Q9Y4E6 1490 aa24.53■■□□□ 1.52
PRPF40A-201ENST00000354363 TEX14Q8IWB6 1497 aa24.48■■□□□ 1.51
PRPF40A-201ENST00000354363 KDM4FA0A1W2PPD8 638 aa24.48■■□□□ 1.51
PRPF40A-201ENST00000354363 CSRNP3Q8WYN3 585 aa24.48■■□□□ 1.51
PRPF40A-201ENST00000354363 COL17A1Q9UMD9 1497 aaPredicted RBP24.47■■□□□ 1.51
PRPF40A-201ENST00000354363 CFAP43Q8NDM7 1665 aa24.43■■□□□ 1.5
PRPF40A-201ENST00000354363 SAMD9Q5K651 1589 aa24.41■■□□□ 1.5
PRPF40A-201ENST00000354363 P3H3Q8IVL6 736 aa24.4■■□□□ 1.5
PRPF40A-201ENST00000354363 EEA1Q15075 1411 aa24.39■■□□□ 1.49
PRPF40A-201ENST00000354363 KCNH8Q96L42 1107 aa24.38■■□□□ 1.49
PRPF40A-201ENST00000354363 CD109Q6YHK3 1445 aa24.37■■□□□ 1.49
PRPF40A-201ENST00000354363 MAGI3Q5TCQ9 1506 aa24.36■■□□□ 1.49
PRPF40A-201ENST00000354363 FAM9AQ8IZU1 332 aaPredicted RBP24.35■■□□□ 1.49
PRPF40A-201ENST00000354363 ATP10BO94823 1461 aa24.33■■□□□ 1.49
PRPF40A-201ENST00000354363 RAPGEF6Q8TEU7 1601 aa24.32■■□□□ 1.48
PRPF40A-201ENST00000354363 ARID3CA6NKF2 412 aa24.32■■□□□ 1.48
PRPF40A-201ENST00000354363 ADGRL1O94910 1474 aa24.3■■□□□ 1.48
PRPF40A-201ENST00000354363 KIF21BO75037 1637 aa24.24■■□□□ 1.47
PRPF40A-201ENST00000354363 ABCA9Q8IUA7 1624 aa24.24■■□□□ 1.47
PRPF40A-201ENST00000354363 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
PRPF40A-201ENST00000354363 FHOD3Q2V2M9 1422 aa24.21■■□□□ 1.47
PRPF40A-201ENST00000354363 NUP153P49790 1475 aaKnown RBP24.2■■□□□ 1.46
PRPF40A-201ENST00000354363 ARAP3Q8WWN8 1544 aa24.18■■□□□ 1.46
PRPF40A-201ENST00000354363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.15■■□□□ 1.46
PRPF40A-201ENST00000354363 HNRNPUL2Q1KMD3 747 aaKnown RBP24.15■■□□□ 1.46
PRPF40A-201ENST00000354363 EFCAB5A4FU69 1503 aa24.15■■□□□ 1.46
PRPF40A-201ENST00000354363 PHLDB1Q86UU1 1377 aa24.1■■□□□ 1.45
PRPF40A-201ENST00000354363 NEO1Q92859 1461 aa24.08■■□□□ 1.44
PRPF40A-201ENST00000354363 CHIC1Q5VXU3 224 aa24.06■■□□□ 1.44
PRPF40A-201ENST00000354363 PLEKHD1A6NEE1 506 aa24.03■■□□□ 1.44
PRPF40A-201ENST00000354363 RAPGEF3O95398 923 aa24.01■■□□□ 1.43
PRPF40A-201ENST00000354363 FRMPD1Q5SYB0 1578 aa24.01■■□□□ 1.43
PRPF40A-201ENST00000354363 EHMT2Q96KQ7 1210 aa24.01■■□□□ 1.43
PRPF40A-201ENST00000354363 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
PRPF40A-201ENST00000354363 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.99■■□□□ 1.438e-8■■□□□ 12
PRPF40A-201ENST00000354363 HECW2Q9P2P5 1572 aa23.98■■□□□ 1.43
PRPF40A-201ENST00000354363 CDK13Q14004 1512 aaKnown RBP23.97■■□□□ 1.43
PRPF40A-201ENST00000354363 TTC37Q6PGP7 1564 aa23.96■■□□□ 1.43
PRPF40A-201ENST00000354363 CFAP74Q9C0B2 1584 aa23.95■■□□□ 1.42
PRPF40A-201ENST00000354363 ARHGAP35Q9NRY4 1499 aa23.94■■□□□ 1.42
PRPF40A-201ENST00000354363 RICTORQ6R327 1708 aa23.94■■□□□ 1.42
PRPF40A-201ENST00000354363 ADAMTSL3P82987 1691 aa23.92■■□□□ 1.42
PRPF40A-201ENST00000354363 AKNAQ7Z591 1439 aa23.92■■□□□ 1.42
PRPF40A-201ENST00000354363 FANCAO15360 1455 aa23.91■■□□□ 1.42
PRPF40A-201ENST00000354363 FMN1Q68DA7 1419 aa23.91■■□□□ 1.42
PRPF40A-201ENST00000354363 HECW1Q76N89 1606 aa23.91■■□□□ 1.42
PRPF40A-201ENST00000354363 DENND4BO75064 1496 aaPredicted RBP23.9■■□□□ 1.42
PRPF40A-201ENST00000354363 BCORL1Q5H9F3 1711 aa23.88■■□□□ 1.41
PRPF40A-201ENST00000354363 ARHGEF40Q8TER5 1519 aa23.86■■□□□ 1.41
PRPF40A-201ENST00000354363 ATP1B4Q9UN42 357 aaPredicted RBP23.85■■□□□ 1.41
PRPF40A-201ENST00000354363 LRRIQ1Q96JM4 1722 aa23.83■■□□□ 1.41
PRPF40A-201ENST00000354363 PTPRMP28827 1452 aa23.82■■□□□ 1.4
PRPF40A-201ENST00000354363 ZMYM4Q5VZL5 1548 aa23.82■■□□□ 1.4
PRPF40A-201ENST00000354363 MYO5CQ9NQX4 1742 aa23.82■■□□□ 1.4
PRPF40A-201ENST00000354363 PLCH2O75038 1416 aa23.81■■□□□ 1.4
PRPF40A-201ENST00000354363 MADDQ8WXG6 1647 aa23.81■■□□□ 1.4
PRPF40A-201ENST00000354363 ARID4BQ4LE39 1312 aaPredicted RBP23.81■■□□□ 1.4
PRPF40A-201ENST00000354363 KIF14Q15058 1648 aa23.78■■□□□ 1.4
PRPF40A-201ENST00000354363 CDK11AQ9UQ88 783 aaPredicted RBP23.77■■□□□ 1.4
PRPF40A-201ENST00000354363 ZFYVE16Q7Z3T8 1539 aa23.76■■□□□ 1.39
PRPF40A-201ENST00000354363 SCAPERQ9BY12 1400 aa23.75■■□□□ 1.39
PRPF40A-201ENST00000354363 SIGLEC1Q9BZZ2 1709 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms