RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 PHLDB1Q86UU1 1377 aa20.45■□□□□ 0.86
CPSF7-201ENST00000340437 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
CPSF7-201ENST00000340437 TSHZ2Q9NRE2 1034 aa20.44■□□□□ 0.86
CPSF7-201ENST00000340437 SETD5Q9C0A6 1442 aa20.44■□□□□ 0.86
CPSF7-201ENST00000340437 CNGB1Q14028 1251 aaPredicted RBP20.43■□□□□ 0.86
CPSF7-201ENST00000340437 NCAPD3P42695 1498 aa20.41■□□□□ 0.86
CPSF7-201ENST00000340437 NEFLP07196 543 aa20.41■□□□□ 0.86
CPSF7-201ENST00000340437 ANP32CO43423 234 aa20.39■□□□□ 0.85
CPSF7-201ENST00000340437 CFTRP13569 1480 aa20.38■□□□□ 0.85
CPSF7-201ENST00000340437 FHOD3Q2V2M9 1422 aa20.36■□□□□ 0.85
CPSF7-201ENST00000340437 CHIC2Q9UKJ5 165 aa20.33■□□□□ 0.85
CPSF7-201ENST00000340437 WDR97A6NE52 1622 aa20.32■□□□□ 0.84
CPSF7-201ENST00000340437 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
CPSF7-201ENST00000340437 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
CPSF7-201ENST00000340437 IRX6P78412 446 aaPredicted RBP20.3■□□□□ 0.84
CPSF7-201ENST00000340437 MAPKBP1O60336 1514 aa20.3■□□□□ 0.84
CPSF7-201ENST00000340437 TONSLQ96HA7 1378 aa20.3■□□□□ 0.84
CPSF7-201ENST00000340437 PPP1R15AO75807 674 aaPredicted RBP20.3■□□□□ 0.84
CPSF7-201ENST00000340437 CADPSQ9ULU8 1353 aa20.29■□□□□ 0.84
CPSF7-201ENST00000340437 RRP7BPQ9NSQ0 103 aa20.26■□□□□ 0.83
CPSF7-201ENST00000340437 TIAM1Q13009 1591 aa20.26■□□□□ 0.83
CPSF7-201ENST00000340437 RAD54L2Q9Y4B4 1467 aa20.26■□□□□ 0.83
CPSF7-201ENST00000340437 HMGXB3Q12766 1538 aa20.25■□□□□ 0.83
CPSF7-201ENST00000340437 MTUS2Q5JR59 1369 aa20.23■□□□□ 0.83
CPSF7-201ENST00000340437 FHAD1B1AJZ9 1412 aa20.23■□□□□ 0.83
CPSF7-201ENST00000340437 HNRNPUQ00839 825 aaKnown RBP eCLIP20.21■□□□□ 0.83
CPSF7-201ENST00000340437 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
CPSF7-201ENST00000340437 FOXD1Q16676 465 aa20.14■□□□□ 0.81
CPSF7-201ENST00000340437 PCF11O94913 1555 aaKnown RBP20.13■□□□□ 0.81
CPSF7-201ENST00000340437 ANP32EQ9BTT0 268 aa20.13■□□□□ 0.81
CPSF7-201ENST00000340437 POLR3GLQ9BT43 218 aa20.12■□□□□ 0.81
CPSF7-201ENST00000340437 FANCD2Q9BXW9 1451 aa20.11■□□□□ 0.81
CPSF7-201ENST00000340437 SENP3-EIF4A1A0A087X0R7 540 aa20.1■□□□□ 0.81
CPSF7-201ENST00000340437 RBM19Q9Y4C8 960 aaKnown RBP20.08■□□□□ 0.81
CPSF7-201ENST00000340437 NESP48681 1621 aa20.08■□□□□ 0.8
CPSF7-201ENST00000340437 TIMELESSQ9UNS1 1208 aa20.07■□□□□ 0.8
CPSF7-201ENST00000340437 CCER2I3L3R5 266 aa20.07■□□□□ 0.8
CPSF7-201ENST00000340437 FAM9BQ8IZU0 186 aa20.07■□□□□ 0.8
CPSF7-201ENST00000340437 FBLN2P98095 1184 aa20.06■□□□□ 0.8
CPSF7-201ENST00000340437 HSPA5P11021 654 aaKnown RBP20.04■□□□□ 0.8
CPSF7-201ENST00000340437 FGD6Q6ZV73 1430 aa20.03■□□□□ 0.8
CPSF7-201ENST00000340437 CCDC18Q5T9S5 1454 aa20.03■□□□□ 0.8
CPSF7-201ENST00000340437 PTPRKQ15262 1439 aa20.02■□□□□ 0.8
CPSF7-201ENST00000340437 ZNF326Q5BKZ1 582 aaKnown RBP19.99■□□□□ 0.79
CPSF7-201ENST00000340437 MAP3K1Q13233 1512 aa19.99■□□□□ 0.79
CPSF7-201ENST00000340437 CASKIN1Q8WXD9 1431 aa19.99■□□□□ 0.79
CPSF7-201ENST00000340437 POLA1P09884 1462 aaPredicted RBP19.98■□□□□ 0.79
CPSF7-201ENST00000340437 CCDC184Q52MB2 194 aa19.97■□□□□ 0.79
CPSF7-201ENST00000340437 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
CPSF7-201ENST00000340437 FMN1Q68DA7 1419 aa19.96■□□□□ 0.79
CPSF7-201ENST00000340437 EIF4G2P78344 907 aaKnown RBP eCLIP19.95■□□□□ 0.78
CPSF7-201ENST00000340437 FYCO1Q9BQS8 1478 aa19.94■□□□□ 0.78
CPSF7-201ENST00000340437 AQRO60306 1485 aaKnown RBP eCLIP19.93■□□□□ 0.782e-7■■■■■ 40.5
CPSF7-201ENST00000340437 WASHC2AQ641Q2 1341 aa19.92■□□□□ 0.78
CPSF7-201ENST00000340437 ERICH6Q7L0X2 663 aa19.92■□□□□ 0.78
CPSF7-201ENST00000340437 L3MBTL2Q969R5 705 aa19.92■□□□□ 0.78
CPSF7-201ENST00000340437 TOPBP1Q92547 1522 aa19.92■□□□□ 0.78
CPSF7-201ENST00000340437 CDK11AQ9UQ88 783 aaPredicted RBP19.91■□□□□ 0.78
CPSF7-201ENST00000340437 MRS2Q9HD23 443 aa19.91■□□□□ 0.78
CPSF7-201ENST00000340437 UACAQ9BZF9 1416 aa19.9■□□□□ 0.78
CPSF7-201ENST00000340437 CC2D2AQ9P2K1 1620 aa19.9■□□□□ 0.78
CPSF7-201ENST00000340437 NCOA2Q15596 1464 aa19.9■□□□□ 0.78
CPSF7-201ENST00000340437 MPHOSPH9Q99550 1183 aa19.89■□□□□ 0.77
CPSF7-201ENST00000340437 NAIPQ13075 1403 aa19.88■□□□□ 0.77
CPSF7-201ENST00000340437 ZNF777Q9ULD5 760 aaPredicted RBP19.87■□□□□ 0.77
CPSF7-201ENST00000340437 C11orf95C9JLR9 678 aaPredicted RBP19.86■□□□□ 0.77
CPSF7-201ENST00000340437 HFM1A2PYH4 1435 aa19.86■□□□□ 0.77
CPSF7-201ENST00000340437 CFAP43Q8NDM7 1665 aa19.85■□□□□ 0.77
CPSF7-201ENST00000340437 MYOM3Q5VTT5 1437 aa19.85■□□□□ 0.77
CPSF7-201ENST00000340437 B4GALNT3Q6L9W6 998 aa19.84■□□□□ 0.77
CPSF7-201ENST00000340437 ABCA10Q8WWZ4 1543 aa19.84■□□□□ 0.77
CPSF7-201ENST00000340437 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.76
CPSF7-201ENST00000340437 ZNF644Q9H582 1327 aaPredicted RBP19.81■□□□□ 0.76
CPSF7-201ENST00000340437 DNMBPQ6XZF7 1577 aa19.8■□□□□ 0.76
CPSF7-201ENST00000340437 EFCAB5A4FU69 1503 aa19.79■□□□□ 0.76
CPSF7-201ENST00000340437 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.79■□□□□ 0.761e-11■■□□□ 12.1
CPSF7-201ENST00000340437 PTPN23Q9H3S7 1636 aa19.78■□□□□ 0.76
CPSF7-201ENST00000340437 GAPVD1Q14C86 1478 aa19.78■□□□□ 0.76
CPSF7-201ENST00000340437 MSH5O43196 834 aa19.78■□□□□ 0.76
CPSF7-201ENST00000340437 NBPF8Q3BBV2 869 aa19.77■□□□□ 0.76
CPSF7-201ENST00000340437 SNAPC4Q5SXM2 1469 aa19.77■□□□□ 0.75
CPSF7-201ENST00000340437 PRDM2Q13029 1718 aa19.75■□□□□ 0.75
CPSF7-201ENST00000340437 PRKRIP1Q9H875 184 aaPredicted RBP19.74■□□□□ 0.75
CPSF7-201ENST00000340437 URB2Q14146 1524 aaKnown RBP19.73■□□□□ 0.75
CPSF7-201ENST00000340437 SALL2Q9Y467 1007 aaPredicted RBP19.7■□□□□ 0.74
CPSF7-201ENST00000340437 PPP4R2Q9NY27 417 aa19.69■□□□□ 0.74
CPSF7-201ENST00000340437 KDM2AQ9Y2K7 1162 aa19.69■□□□□ 0.74
CPSF7-201ENST00000340437 CDK13Q14004 1512 aaKnown RBP19.68■□□□□ 0.74
CPSF7-201ENST00000340437 BCL11AQ9H165 835 aa19.67■□□□□ 0.74
CPSF7-201ENST00000340437 GRIN2BQ13224 1484 aa19.66■□□□□ 0.74
CPSF7-201ENST00000340437 CCDC7Q96M83 1385 aa19.66■□□□□ 0.74
CPSF7-201ENST00000340437 CTTNBP2Q8WZ74 1663 aa19.66■□□□□ 0.74
CPSF7-201ENST00000340437 KIF7Q2M1P5 1343 aa19.65■□□□□ 0.74
CPSF7-201ENST00000340437 CUL7Q14999 1698 aa19.65■□□□□ 0.74
CPSF7-201ENST00000340437 MAGI3Q5TCQ9 1506 aa19.65■□□□□ 0.74
CPSF7-201ENST00000340437 SUPT6HQ7KZ85 1726 aaKnown RBP19.64■□□□□ 0.73
CPSF7-201ENST00000340437 CNTLNQ9NXG0 1405 aa19.63■□□□□ 0.73
CPSF7-201ENST00000340437 KDM6BO15054 1643 aa19.62■□□□□ 0.73
CPSF7-201ENST00000340437 CFDP1Q9UEE9 299 aaPredicted RBP19.62■□□□□ 0.73
CPSF7-201ENST00000340437 EHBP1L1Q8N3D4 1523 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms