RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 TIA1P31483 386 aaKnown RBP eCLIP13.78□□□□□ -0.25e-16■■■■■ 27.7
CPSF7-201ENST00000340437 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.96□□□□□ -0.177e-16■■□□□ 13
CPSF7-201ENST00000340437 PCBP1Q15365 356 aaKnown RBP eCLIP14.29□□□□□ -0.121e-15■■■■■ 80.2
CPSF7-201ENST00000340437 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.79■□□□□ 0.761e-11■■□□□ 12.1
CPSF7-201ENST00000340437 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.57■□□□□ 0.244e-11■■□□□ 12.6
CPSF7-201ENST00000340437 EIF3HO15372 352 aaKnown RBP eCLIP15.82■□□□□ 0.124e-10■□□□□ 9.1
CPSF7-201ENST00000340437 GTF2F1P35269 517 aaKnown RBP eCLIP16.82■□□□□ 0.285e-10■■■■■ 57.2
CPSF7-201ENST00000340437 SF3B4Q15427 424 aaKnown RBP eCLIP13.9□□□□□ -0.181e-9■■■■■ 29.1
CPSF7-201ENST00000340437 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.56■□□□□ 0.243e-9■■□□□ 13.7
CPSF7-201ENST00000340437 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.75□□□□□ -0.055e-9■■□□□ 12.4
CPSF7-201ENST00000340437 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.4■□□□□ 0.068e-9■■■■■ 27.8
CPSF7-201ENST00000340437 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.25□□□□□ -0.298e-9■■□□□ 12.1
CPSF7-201ENST00000340437 HNRNPKP61978 463 aaKnown RBP eCLIP12.73□□□□□ -0.371e-8■■□□□ 12.8
CPSF7-201ENST00000340437 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.72e-8■□□□□ 11
CPSF7-201ENST00000340437 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.99□□□□□ -0.173e-8■■■□□ 15.8
CPSF7-201ENST00000340437 KHSRPQ92945 711 aaKnown RBP eCLIP14.77□□□□□ -0.054e-8■■□□□ 14
CPSF7-201ENST00000340437 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.1□□□□□ -0.155e-8■■■■■ 34.6
CPSF7-201ENST00000340437 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.15e-8■■■□□ 16.1
CPSF7-201ENST00000340437 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.37□□□□□ -0.116e-8■■□□□ 13.9
CPSF7-201ENST00000340437 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.98□□□□□ -0.496e-8■■■■□ 22.6
CPSF7-201ENST00000340437 UPF1Q92900 1129 aaKnown RBP eCLIP13.98□□□□□ -0.177e-8■■■□□ 18.4
CPSF7-201ENST00000340437 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.33■□□□□ 0.361e-7■□□□□ 8.3
CPSF7-201ENST00000340437 PPIGQ13427 754 aaKnown RBP eCLIP13.88□□□□□ -0.191e-7■■■□□ 15.3
CPSF7-201ENST00000340437 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.67■□□□□ 0.11e-7■■■■□ 22.8
CPSF7-201ENST00000340437 EFTUD2Q15029 972 aaKnown RBP eCLIP15.24■□□□□ 0.032e-7■■■■■ 31.2
CPSF7-201ENST00000340437 AQRO60306 1485 aaKnown RBP eCLIP19.93■□□□□ 0.782e-7■■■■■ 40.5
CPSF7-201ENST00000340437 GPKOWQ92917 476 aaPredicted RBP eCLIP16.3■□□□□ 0.23e-7■■■■□ 21.6
CPSF7-201ENST00000340437 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.61■□□□□ 0.254e-7■■■□□ 16.7
CPSF7-201ENST00000340437 RBFOX2O43251 390 aaKnown RBP eCLIP11.98□□□□□ -0.494e-7■□□□□ 10.3
CPSF7-201ENST00000340437 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.84■□□□□ 0.135e-7■■■■■ 44.9
CPSF7-201ENST00000340437 ZNF622Q969S3 477 aaKnown RBP eCLIP15.82■□□□□ 0.127e-7■□□□□ 9.5
CPSF7-201ENST00000340437 YBX3P16989 372 aaKnown RBP eCLIP14.63□□□□□ -0.077e-7■□□□□ 11.1
CPSF7-201ENST00000340437 PCBP2Q15366 365 aaKnown RBP eCLIP14.04□□□□□ -0.167e-7■■■■■ 27.4
CPSF7-201ENST00000340437 LSM11P83369 360 aaKnown RBP eCLIP13.75□□□□□ -0.218e-7■□□□□ 10.6
CPSF7-201ENST00000340437 ZC3H11AO75152 810 aaKnown RBP eCLIP15.1■□□□□ 0.019e-7■■■□□ 16.7
CPSF7-201ENST00000340437 PRPF4O43172 522 aaKnown RBP eCLIP15.07■□□□□ 09e-7■■■■■ 34.9
CPSF7-201ENST00000340437 RBM22Q9NW64 420 aaKnown RBP eCLIP14.55□□□□□ -0.081e-6■■■■□ 23.9
CPSF7-201ENST00000340437 U2AF2P26368 475 aaKnown RBP eCLIP16.98■□□□□ 0.311e-6■■■□□ 18.8
CPSF7-201ENST00000340437 NCBP2P52298 156 aaKnown RBP eCLIP13.62□□□□□ -0.232e-6■■□□□ 12.6
CPSF7-201ENST00000340437 DDX3XO00571 662 aaKnown RBP eCLIP15.67■□□□□ 0.12e-6■■■□□ 16.2
CPSF7-201ENST00000340437 ILF3Q12906 894 aaKnown RBP eCLIP13.16□□□□□ -0.32e-6■■■■□ 21.5
CPSF7-201ENST00000340437 RBM15Q96T37 977 aaKnown RBP eCLIP15.32■□□□□ 0.043e-6■□□□□ 8.7
CPSF7-201ENST00000340437 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.81□□□□□ -0.044e-6■■■■■ 36.6
CPSF7-201ENST00000340437 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.27□□□□□ -0.134e-6■■■■■ 41.2
CPSF7-201ENST00000340437 SF3A3Q12874 501 aaKnown RBP eCLIP15.94■□□□□ 0.145e-6■■■□□ 15
CPSF7-201ENST00000340437 TIAL1Q01085 375 aaKnown RBP eCLIP14.26□□□□□ -0.135e-6■■■■□ 21
CPSF7-201ENST00000340437 AKAP1Q92667 903 aaKnown RBP eCLIP13.44□□□□□ -0.266e-6■■□□□ 12.3
CPSF7-201ENST00000340437 SF3B1O75533 1304 aaKnown RBP eCLIP14.67□□□□□ -0.067e-6■■■■■ 28.7
CPSF7-201ENST00000340437 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.98□□□□□ -0.018e-6■■■■■ 46.4
CPSF7-201ENST00000340437 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.49■□□□□ 0.078e-6■■□□□ 11.4
Retrieved 50 of 50 RNA–protein pairs in 10.9 ms