RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 ARHGAP35Q9NRY4 1499 aa18.09■□□□□ 0.49
VPS33B-201ENST00000333371 URB2Q14146 1524 aaKnown RBP18.07■□□□□ 0.48
VPS33B-201ENST00000333371 RRBP1Q9P2E9 1410 aaKnown RBP18.05■□□□□ 0.48
VPS33B-201ENST00000333371 KIF21AQ7Z4S6 1674 aa18.04■□□□□ 0.48
VPS33B-201ENST00000333371 CCNB3Q8WWL7 1395 aa18.01■□□□□ 0.47
VPS33B-201ENST00000333371 CLSPNQ9HAW4 1339 aa18.01■□□□□ 0.47
VPS33B-201ENST00000333371 CUL7Q14999 1698 aa17.99■□□□□ 0.47
VPS33B-201ENST00000333371 WDR97A6NE52 1622 aa17.98■□□□□ 0.47
VPS33B-201ENST00000333371 TDRD9Q8NDG6 1382 aaKnown RBP17.93■□□□□ 0.46
VPS33B-201ENST00000333371 P3H3Q8IVL6 736 aa17.93■□□□□ 0.46
VPS33B-201ENST00000333371 RAB3GAP2Q9H2M9 1393 aa17.91■□□□□ 0.46
VPS33B-201ENST00000333371 ABCA5Q8WWZ7 1642 aa17.91■□□□□ 0.46
VPS33B-201ENST00000333371 GAPVD1Q14C86 1478 aa17.9■□□□□ 0.46
VPS33B-201ENST00000333371 TIAM1Q13009 1591 aa17.89■□□□□ 0.45
VPS33B-201ENST00000333371 CTTNBP2Q8WZ74 1663 aa17.89■□□□□ 0.45
VPS33B-201ENST00000333371 ATP1B4Q9UN42 357 aaPredicted RBP17.88■□□□□ 0.45
VPS33B-201ENST00000333371 MAPKBP1O60336 1514 aa17.85■□□□□ 0.45
VPS33B-201ENST00000333371 FHAD1B1AJZ9 1412 aa17.85■□□□□ 0.45
VPS33B-201ENST00000333371 PHLDB1Q86UU1 1377 aa17.85■□□□□ 0.45
VPS33B-201ENST00000333371 FAM50AQ14320 339 aaKnown RBP17.85■□□□□ 0.45
VPS33B-201ENST00000333371 MRC2Q9UBG0 1479 aa17.84■□□□□ 0.45
VPS33B-201ENST00000333371 KCNH8Q96L42 1107 aa17.84■□□□□ 0.45
VPS33B-201ENST00000333371 TARBP1Q13395 1621 aaKnown RBP17.84■□□□□ 0.45
VPS33B-201ENST00000333371 EFCAB5A4FU69 1503 aa17.82■□□□□ 0.44
VPS33B-201ENST00000333371 LRRC9Q6ZRR7 1453 aa17.82■□□□□ 0.44
VPS33B-201ENST00000333371 SIN3AQ96ST3 1273 aa17.82■□□□□ 0.44
VPS33B-201ENST00000333371 FHOD3Q2V2M9 1422 aa17.8■□□□□ 0.44
VPS33B-201ENST00000333371 PCF11O94913 1555 aaKnown RBP17.79■□□□□ 0.44
VPS33B-201ENST00000333371 MAP3K1Q13233 1512 aa17.79■□□□□ 0.44
VPS33B-201ENST00000333371 SETD5Q9C0A6 1442 aa17.78■□□□□ 0.44
VPS33B-201ENST00000333371 PBRM1Q86U86 1689 aa17.77■□□□□ 0.43
VPS33B-201ENST00000333371 SUPT16HQ9Y5B9 1047 aaKnown RBP17.76■□□□□ 0.43
VPS33B-201ENST00000333371 CFAP43Q8NDM7 1665 aa17.74■□□□□ 0.43
VPS33B-201ENST00000333371 HIRIP3Q9BW71 556 aaPredicted RBP17.73■□□□□ 0.43
VPS33B-201ENST00000333371 AQRO60306 1485 aaKnown RBP eCLIP17.73■□□□□ 0.432e-7■■■■□ 25.7
VPS33B-201ENST00000333371 FYCO1Q9BQS8 1478 aa17.72■□□□□ 0.43
VPS33B-201ENST00000333371 FMN1Q68DA7 1419 aa17.71■□□□□ 0.42
VPS33B-201ENST00000333371 ERCC6Q03468 1493 aa17.71■□□□□ 0.42
VPS33B-201ENST00000333371 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
VPS33B-201ENST00000333371 CASKIN1Q8WXD9 1431 aa17.7■□□□□ 0.42
VPS33B-201ENST00000333371 WDR62O43379 1518 aa17.7■□□□□ 0.42
VPS33B-201ENST00000333371 IFT140Q96RY7 1462 aa17.69■□□□□ 0.42
VPS33B-201ENST00000333371 GRIN2BQ13224 1484 aa17.67■□□□□ 0.42
VPS33B-201ENST00000333371 SAMD9Q5K651 1589 aa17.67■□□□□ 0.42
VPS33B-201ENST00000333371 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
VPS33B-201ENST00000333371 ZNF608Q9ULD9 1512 aaPredicted RBP17.63■□□□□ 0.41
VPS33B-201ENST00000333371 SNAPC4Q5SXM2 1469 aa17.61■□□□□ 0.41
VPS33B-201ENST00000333371 IQGAP2Q13576 1575 aa17.6■□□□□ 0.41
VPS33B-201ENST00000333371 BCANQ96GW7 911 aa17.57■□□□□ 0.4
VPS33B-201ENST00000333371 MTUS2Q5JR59 1369 aa17.57■□□□□ 0.4
VPS33B-201ENST00000333371 EIF4G3O43432 1585 aaKnown RBP17.56■□□□□ 0.4
VPS33B-201ENST00000333371 THOC2Q8NI27 1593 aaKnown RBP17.55■□□□□ 0.4
VPS33B-201ENST00000333371 PPP1R15AO75807 674 aaPredicted RBP17.55■□□□□ 0.4
VPS33B-201ENST00000333371 LRRIQ1Q96JM4 1722 aa17.54■□□□□ 0.4
VPS33B-201ENST00000333371 PTPRKQ15262 1439 aa17.54■□□□□ 0.4
VPS33B-201ENST00000333371 FGD6Q6ZV73 1430 aa17.54■□□□□ 0.4
VPS33B-201ENST00000333371 TSHZ2Q9NRE2 1034 aa17.5■□□□□ 0.39
VPS33B-201ENST00000333371 CCDC18Q5T9S5 1454 aa17.49■□□□□ 0.39
VPS33B-201ENST00000333371 TRIM52Q96A61 297 aa17.49■□□□□ 0.39
VPS33B-201ENST00000333371 HECW1Q76N89 1606 aa17.47■□□□□ 0.39
VPS33B-201ENST00000333371 GRIN2AQ12879 1464 aa17.47■□□□□ 0.39
VPS33B-201ENST00000333371 MYT1Q01538 1121 aa17.47■□□□□ 0.39
VPS33B-201ENST00000333371 FKBP8Q14318 412 aa17.47■□□□□ 0.39
VPS33B-201ENST00000333371 TONSLQ96HA7 1378 aa17.46■□□□□ 0.39
VPS33B-201ENST00000333371 UGGT2Q9NYU1 1516 aa17.46■□□□□ 0.39
VPS33B-201ENST00000333371 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.46■□□□□ 0.39
VPS33B-201ENST00000333371 SUPT6HQ7KZ85 1726 aaKnown RBP17.46■□□□□ 0.39
VPS33B-201ENST00000333371 EHBP1L1Q8N3D4 1523 aa17.46■□□□□ 0.38
VPS33B-201ENST00000333371 KIAA0586Q9BVV6 1533 aa17.46■□□□□ 0.38
VPS33B-201ENST00000333371 TIMELESSQ9UNS1 1208 aa17.45■□□□□ 0.38
VPS33B-201ENST00000333371 MAGI1Q96QZ7 1491 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-201ENST00000333371 CHMP7Q8WUX9 453 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-201ENST00000333371 PTPN23Q9H3S7 1636 aa17.44■□□□□ 0.38
VPS33B-201ENST00000333371 NCOA2Q15596 1464 aa17.44■□□□□ 0.38
VPS33B-201ENST00000333371 FBLN2P98095 1184 aa17.43■□□□□ 0.38
VPS33B-201ENST00000333371 CHIC2Q9UKJ5 165 aa17.42■□□□□ 0.38
VPS33B-201ENST00000333371 HFM1A2PYH4 1435 aa17.41■□□□□ 0.38
VPS33B-201ENST00000333371 ANP32CO43423 234 aa17.41■□□□□ 0.38
VPS33B-201ENST00000333371 NAIPQ13075 1403 aa17.41■□□□□ 0.38
VPS33B-201ENST00000333371 RRP7BPQ9NSQ0 103 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 UACAQ9BZF9 1416 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 SYNJ2O15056 1496 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 KIAA0556O60303 1618 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 MYOM3Q5VTT5 1437 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 ARID3CA6NKF2 412 aa17.4■□□□□ 0.38
VPS33B-201ENST00000333371 EPRSP07814 1512 aaKnown RBP17.39■□□□□ 0.38
VPS33B-201ENST00000333371 MAGI3Q5TCQ9 1506 aa17.38■□□□□ 0.37
VPS33B-201ENST00000333371 CDK13Q14004 1512 aaKnown RBP17.37■□□□□ 0.37
VPS33B-201ENST00000333371 DISP1Q96F81 1524 aa17.37■□□□□ 0.37
VPS33B-201ENST00000333371 CEP170Q5SW79 1584 aa17.35■□□□□ 0.37
VPS33B-201ENST00000333371 CCER2I3L3R5 266 aa17.34■□□□□ 0.37
VPS33B-201ENST00000333371 KDM5BQ9UGL1 1544 aa17.33■□□□□ 0.36
VPS33B-201ENST00000333371 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
VPS33B-201ENST00000333371 KDM6BO15054 1643 aa17.31■□□□□ 0.36
VPS33B-201ENST00000333371 RAPGEF6Q8TEU7 1601 aa17.3■□□□□ 0.36
VPS33B-201ENST00000333371 FOXD1Q16676 465 aa17.29■□□□□ 0.36
VPS33B-201ENST00000333371 DENND4BO75064 1496 aaPredicted RBP17.28■□□□□ 0.36
VPS33B-201ENST00000333371 NEFLP07196 543 aa17.27■□□□□ 0.36
VPS33B-201ENST00000333371 NUP160Q12769 1436 aa17.27■□□□□ 0.36
VPS33B-201ENST00000333371 CARMIL2Q6F5E8 1435 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms