RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 NISCHQ9Y2I1 1504 aa25.65■■□□□ 1.7
VPS33B-201ENST00000333371 CCDC180Q9P1Z9 1646 aa22.1■■□□□ 1.13
VPS33B-201ENST00000333371 SHROOM4Q9ULL8 1493 aa21.82■■□□□ 1.08
VPS33B-201ENST00000333371 ZCCHC6Q5VYS8 1495 aaKnown RBP21.61■■□□□ 1.05
VPS33B-201ENST00000333371 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
VPS33B-201ENST00000333371 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1
VPS33B-201ENST00000333371 DCAF1Q9Y4B6 1507 aa21.1■□□□□ 0.97
VPS33B-201ENST00000333371 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
VPS33B-201ENST00000333371 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
VPS33B-201ENST00000333371 ABCC9O60706 1549 aa20.69■□□□□ 0.9
VPS33B-201ENST00000333371 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
VPS33B-201ENST00000333371 NACADO15069 1562 aa20.5■□□□□ 0.87
VPS33B-201ENST00000333371 PCGF6Q9BYE7 350 aa20.39■□□□□ 0.85
VPS33B-201ENST00000333371 HRCP23327 699 aa20.37■□□□□ 0.85
VPS33B-201ENST00000333371 LOC105371045A0A1W2PR82 267 aa20.31■□□□□ 0.84
VPS33B-201ENST00000333371 RB1CC1Q8TDY2 1594 aa20.26■□□□□ 0.83
VPS33B-201ENST00000333371 PPARGC1BQ86YN6 1023 aaKnown RBP20.13■□□□□ 0.81
VPS33B-201ENST00000333371 RSF1Q96T23 1441 aaPredicted RBP20.09■□□□□ 0.81
VPS33B-201ENST00000333371 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
VPS33B-201ENST00000333371 UNC13AQ9UPW8 1703 aa19.91■□□□□ 0.78
VPS33B-201ENST00000333371 MROH2BQ7Z745 1585 aa19.88■□□□□ 0.77
VPS33B-201ENST00000333371 FAM9AQ8IZU1 332 aaPredicted RBP19.84■□□□□ 0.77
VPS33B-201ENST00000333371 TRIM41Q8WV44 630 aa19.83■□□□□ 0.77
VPS33B-201ENST00000333371 TRIM26Q12899 539 aaPredicted RBP19.82■□□□□ 0.76
VPS33B-201ENST00000333371 EHMT2Q96KQ7 1210 aa19.8■□□□□ 0.76
VPS33B-201ENST00000333371 BAZ1AQ9NRL2 1556 aaPredicted RBP19.78■□□□□ 0.76
VPS33B-201ENST00000333371 WIZO95785 1651 aa19.77■□□□□ 0.76
VPS33B-201ENST00000333371 PABPN1Q86U42 306 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS33B-201ENST00000333371 SMARCA4P51532 1647 aa19.64■□□□□ 0.73
VPS33B-201ENST00000333371 BICRAQ9NZM4 1560 aa19.62■□□□□ 0.73
VPS33B-201ENST00000333371 TOP2AP11388 1531 aaKnown RBP19.51■□□□□ 0.71
VPS33B-201ENST00000333371 SMARCA2P51531 1590 aa19.36■□□□□ 0.69
VPS33B-201ENST00000333371 CCDC88BA6NC98 1476 aa19.35■□□□□ 0.69
VPS33B-201ENST00000333371 ZEB1P37275 1124 aaPredicted RBP19.33■□□□□ 0.68
VPS33B-201ENST00000333371 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
VPS33B-201ENST00000333371 PEG3Q9GZU2 1588 aa19.29■□□□□ 0.68
VPS33B-201ENST00000333371 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
VPS33B-201ENST00000333371 ATAD2BQ9ULI0 1458 aa19.2■□□□□ 0.66
VPS33B-201ENST00000333371 TTBK1Q5TCY1 1321 aaPredicted RBP19.17■□□□□ 0.66
VPS33B-201ENST00000333371 BAZ1BQ9UIG0 1483 aaKnown RBP19.17■□□□□ 0.66
VPS33B-201ENST00000333371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.16■□□□□ 0.66
VPS33B-201ENST00000333371 SOGA1O94964 1423 aa19.05■□□□□ 0.64
VPS33B-201ENST00000333371 CCER1Q8TC90 406 aaPredicted RBP19.04■□□□□ 0.64
VPS33B-201ENST00000333371 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
VPS33B-201ENST00000333371 CEP162Q5TB80 1403 aa18.97■□□□□ 0.63
VPS33B-201ENST00000333371 SCAF1Q9H7N4 1312 aaKnown RBP18.95■□□□□ 0.62
VPS33B-201ENST00000333371 WRNQ14191 1432 aaPredicted RBP eCLIP18.94■□□□□ 0.62
VPS33B-201ENST00000333371 HMGXB3Q12766 1538 aa18.92■□□□□ 0.62
VPS33B-201ENST00000333371 NCAPD3P42695 1498 aa18.91■□□□□ 0.62
VPS33B-201ENST00000333371 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
VPS33B-201ENST00000333371 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
VPS33B-201ENST00000333371 TNIKQ9UKE5 1360 aa18.86■□□□□ 0.61
VPS33B-201ENST00000333371 EEA1Q15075 1411 aa18.84■□□□□ 0.61
VPS33B-201ENST00000333371 SYNJ1O43426 1573 aa18.83■□□□□ 0.61
VPS33B-201ENST00000333371 GOLGA3Q08378 1498 aa18.74■□□□□ 0.59
VPS33B-201ENST00000333371 DIEXFQ68CQ4 756 aaKnown RBP18.72■□□□□ 0.59
VPS33B-201ENST00000333371 NEUROD1Q13562 356 aa18.69■□□□□ 0.58
VPS33B-201ENST00000333371 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
VPS33B-201ENST00000333371 RANGAP1P46060 587 aaPredicted RBP18.67■□□□□ 0.58
VPS33B-201ENST00000333371 CC2D2AQ9P2K1 1620 aa18.66■□□□□ 0.58
VPS33B-201ENST00000333371 CFTRP13569 1480 aa18.64■□□□□ 0.57
VPS33B-201ENST00000333371 ACIN1Q9UKV3 1341 aaKnown RBP18.64■□□□□ 0.57
VPS33B-201ENST00000333371 BIVM-ERCC5R4GMW8 1640 aa18.64■□□□□ 0.57
VPS33B-201ENST00000333371 HNRNPUL2Q1KMD3 747 aaKnown RBP18.64■□□□□ 0.57
VPS33B-201ENST00000333371 CEP164Q9UPV0 1460 aa18.6■□□□□ 0.57
VPS33B-201ENST00000333371 PRDM2Q13029 1718 aa18.58■□□□□ 0.57
VPS33B-201ENST00000333371 KIF21BO75037 1637 aa18.58■□□□□ 0.56
VPS33B-201ENST00000333371 CLIP1P30622 1438 aa18.58■□□□□ 0.56
VPS33B-201ENST00000333371 RAPGEF2Q9Y4G8 1499 aa18.55■□□□□ 0.56
VPS33B-201ENST00000333371 CUX1P39880 1505 aa18.55■□□□□ 0.56
VPS33B-201ENST00000333371 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
VPS33B-201ENST00000333371 ZNF316A6NFI3 1004 aaPredicted RBP18.5■□□□□ 0.55
VPS33B-201ENST00000333371 GTF3C3Q9Y5Q9 886 aa18.5■□□□□ 0.55
VPS33B-201ENST00000333371 VPS8Q8N3P4 1428 aa18.47■□□□□ 0.55
VPS33B-201ENST00000333371 CENPBP07199 599 aaPredicted RBP18.44■□□□□ 0.54
VPS33B-201ENST00000333371 APLP2Q06481 763 aa18.43■□□□□ 0.54
VPS33B-201ENST00000333371 PELP1Q8IZL8 1130 aaKnown RBP18.43■□□□□ 0.54
VPS33B-201ENST00000333371 YTHDC1Q96MU7 727 aaKnown RBP18.43■□□□□ 0.54
VPS33B-201ENST00000333371 KIF27Q86VH2 1401 aa18.42■□□□□ 0.54
VPS33B-201ENST00000333371 ERICH3Q5RHP9 1530 aa18.36■□□□□ 0.53
VPS33B-201ENST00000333371 MIER1Q8N108 512 aa18.36■□□□□ 0.53
VPS33B-201ENST00000333371 PRXQ9BXM0 1461 aa18.34■□□□□ 0.53
VPS33B-201ENST00000333371 FANCD2Q9BXW9 1451 aa18.34■□□□□ 0.53
VPS33B-201ENST00000333371 FGD5Q6ZNL6 1462 aa18.3■□□□□ 0.52
VPS33B-201ENST00000333371 CUX2O14529 1486 aa18.3■□□□□ 0.52
VPS33B-201ENST00000333371 KANK4Q5T7N3 995 aaPredicted RBP18.29■□□□□ 0.52
VPS33B-201ENST00000333371 NESP48681 1621 aa18.28■□□□□ 0.52
VPS33B-201ENST00000333371 ARAP1Q96P48 1450 aa18.27■□□□□ 0.52
VPS33B-201ENST00000333371 DNMBPQ6XZF7 1577 aa18.23■□□□□ 0.51
VPS33B-201ENST00000333371 LAMC3Q9Y6N6 1575 aa18.22■□□□□ 0.51
VPS33B-201ENST00000333371 TOPBP1Q92547 1522 aa18.18■□□□□ 0.5
VPS33B-201ENST00000333371 IGF1RP08069 1367 aa18.18■□□□□ 0.5
VPS33B-201ENST00000333371 DHX57Q6P158 1386 aaKnown RBP18.18■□□□□ 0.5
VPS33B-201ENST00000333371 CARMIL1Q5VZK9 1371 aa18.14■□□□□ 0.49
VPS33B-201ENST00000333371 POLA1P09884 1462 aaPredicted RBP18.13■□□□□ 0.49
VPS33B-201ENST00000333371 ITGAEP38570 1179 aa18.13■□□□□ 0.49
VPS33B-201ENST00000333371 RAD54L2Q9Y4B4 1467 aa18.13■□□□□ 0.49
VPS33B-201ENST00000333371 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
VPS33B-201ENST00000333371 PDS5BQ9NTI5 1447 aa18.11■□□□□ 0.49
VPS33B-201ENST00000333371 ABCA10Q8WWZ4 1543 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms