RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ATP1B4Q9UN42 357 aaPredicted RBP11.2□□□□□ -0.62
VMA21-201ENST00000330374 NPM3O75607 178 aaKnown RBP11.19□□□□□ -0.62
VMA21-201ENST00000330374 RBM19Q9Y4C8 960 aaKnown RBP11.19□□□□□ -0.62
VMA21-201ENST00000330374 TULP1O00294 542 aaPredicted RBP11.18□□□□□ -0.62
VMA21-201ENST00000330374 FAM50AQ14320 339 aaKnown RBP11.18□□□□□ -0.62
VMA21-201ENST00000330374 BAZ1BQ9UIG0 1483 aaKnown RBP11.17□□□□□ -0.62
VMA21-201ENST00000330374 IRX6P78412 446 aaPredicted RBP11.16□□□□□ -0.62
VMA21-201ENST00000330374 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.16□□□□□ -0.62
VMA21-201ENST00000330374 CCNB3Q8WWL7 1395 aa11.16□□□□□ -0.62
VMA21-201ENST00000330374 TAOK2Q9UL54 1235 aa11.15□□□□□ -0.62
VMA21-201ENST00000330374 NBR1Q14596 966 aa11.15□□□□□ -0.62
VMA21-201ENST00000330374 RAB3GAP2Q9H2M9 1393 aa11.15□□□□□ -0.62
VMA21-201ENST00000330374 DAXXQ9UER7 740 aaPredicted RBP11.15□□□□□ -0.62
VMA21-201ENST00000330374 ARAP1Q96P48 1450 aa11.14□□□□□ -0.63
VMA21-201ENST00000330374 CFAP44Q96MT7 982 aa11.13□□□□□ -0.63
VMA21-201ENST00000330374 ANP32CO43423 234 aa11.11□□□□□ -0.63
VMA21-201ENST00000330374 P3H3Q8IVL6 736 aa11.11□□□□□ -0.63
VMA21-201ENST00000330374 UNC13AQ9UPW8 1703 aa11.11□□□□□ -0.63
VMA21-201ENST00000330374 PLCB2Q00722 1185 aa11.1□□□□□ -0.63
VMA21-201ENST00000330374 RRBP1Q9P2E9 1410 aaKnown RBP11.09□□□□□ -0.63
VMA21-201ENST00000330374 ERICH6Q7L0X2 663 aa11.09□□□□□ -0.63
VMA21-201ENST00000330374 WDR97A6NE52 1622 aa11.07□□□□□ -0.64
VMA21-201ENST00000330374 MSH5O43196 834 aa11.06□□□□□ -0.64
VMA21-201ENST00000330374 PPP1R15AO75807 674 aaPredicted RBP11.06□□□□□ -0.64
VMA21-201ENST00000330374 HNRNPUQ00839 825 aaKnown RBP eCLIP11.05□□□□□ -0.64
VMA21-201ENST00000330374 C14orf37Q86TY3 774 aa11.05□□□□□ -0.64
VMA21-201ENST00000330374 ATAD2BQ9ULI0 1458 aa11.04□□□□□ -0.64
VMA21-201ENST00000330374 MAPKBP1O60336 1514 aa11.04□□□□□ -0.64
VMA21-201ENST00000330374 PRXQ9BXM0 1461 aa11.03□□□□□ -0.64
VMA21-201ENST00000330374 SETD5Q9C0A6 1442 aa11.03□□□□□ -0.64
VMA21-201ENST00000330374 ZBTB22O15209 634 aa11.01□□□□□ -0.65
VMA21-201ENST00000330374 ARHGAP35Q9NRY4 1499 aa11.01□□□□□ -0.65
VMA21-201ENST00000330374 CDK11AQ9UQ88 783 aaPredicted RBP11.01□□□□□ -0.65
VMA21-201ENST00000330374 TOP2BQ02880 1626 aa11□□□□□ -0.65
VMA21-201ENST00000330374 FOXD1Q16676 465 aa11□□□□□ -0.65
VMA21-201ENST00000330374 KIF27Q86VH2 1401 aa11□□□□□ -0.65
VMA21-201ENST00000330374 HOMEZQ8IX15 550 aa10.99□□□□□ -0.65
VMA21-201ENST00000330374 CNGB1Q14028 1251 aaPredicted RBP10.99□□□□□ -0.65
VMA21-201ENST00000330374 PHLDB1Q86UU1 1377 aa10.99□□□□□ -0.65
VMA21-201ENST00000330374 BICRAQ9NZM4 1560 aa10.98□□□□□ -0.65
VMA21-201ENST00000330374 CCER2I3L3R5 266 aa10.98□□□□□ -0.65
VMA21-201ENST00000330374 ERICH3Q5RHP9 1530 aa10.98□□□□□ -0.65
VMA21-201ENST00000330374 CUX2O14529 1486 aa10.98□□□□□ -0.65
VMA21-201ENST00000330374 TONSLQ96HA7 1378 aa10.97□□□□□ -0.65
VMA21-201ENST00000330374 KLHL34Q8N239 644 aa10.94□□□□□ -0.66
VMA21-201ENST00000330374 PEG3Q9GZU2 1588 aa10.94□□□□□ -0.66
VMA21-201ENST00000330374 SENP3-EIF4A1A0A087X0R7 540 aa10.93□□□□□ -0.66
VMA21-201ENST00000330374 FAM9BQ8IZU0 186 aa10.93□□□□□ -0.66
VMA21-201ENST00000330374 CUX1P39880 1505 aa10.92□□□□□ -0.66
VMA21-201ENST00000330374 B4GALNT3Q6L9W6 998 aa10.92□□□□□ -0.66
VMA21-201ENST00000330374 PAXIP1Q6ZW49 1069 aaPredicted RBP10.92□□□□□ -0.66
VMA21-201ENST00000330374 LRRC9Q6ZRR7 1453 aa10.9□□□□□ -0.67
VMA21-201ENST00000330374 CCDC184Q52MB2 194 aa10.89□□□□□ -0.67
VMA21-201ENST00000330374 BIVM-ERCC5R4GMW8 1640 aa10.89□□□□□ -0.67
VMA21-201ENST00000330374 CNKSR2Q8WXI2 1034 aa10.89□□□□□ -0.67
VMA21-201ENST00000330374 TIAM1Q13009 1591 aa10.89□□□□□ -0.67
VMA21-201ENST00000330374 FANCIQ9NVI1 1328 aa10.87□□□□□ -0.67
VMA21-201ENST00000330374 IGF1RP08069 1367 aa10.87□□□□□ -0.67
VMA21-201ENST00000330374 CARMIL1Q5VZK9 1371 aa10.87□□□□□ -0.67
VMA21-201ENST00000330374 CHIC2Q9UKJ5 165 aa10.87□□□□□ -0.67
VMA21-201ENST00000330374 TIMELESSQ9UNS1 1208 aa10.86□□□□□ -0.67
VMA21-201ENST00000330374 ARXQ96QS3 562 aa10.86□□□□□ -0.67
VMA21-201ENST00000330374 DEKP35659 375 aaKnown RBP10.85□□□□□ -0.67
VMA21-201ENST00000330374 HSPA5P11021 654 aaKnown RBP10.85□□□□□ -0.67
VMA21-201ENST00000330374 FHOD3Q2V2M9 1422 aa10.85□□□□□ -0.67
VMA21-201ENST00000330374 POLR3GLQ9BT43 218 aa10.84□□□□□ -0.67
VMA21-201ENST00000330374 RRP7BPQ9NSQ0 103 aa10.84□□□□□ -0.67
VMA21-201ENST00000330374 PPP4R2Q9NY27 417 aa10.84□□□□□ -0.67
VMA21-201ENST00000330374 PODXL2Q9NZ53 605 aa10.84□□□□□ -0.67
VMA21-201ENST00000330374 MRS2Q9HD23 443 aa10.83□□□□□ -0.68
VMA21-201ENST00000330374 WASHC2AQ641Q2 1341 aa10.83□□□□□ -0.68
VMA21-201ENST00000330374 FBXO3Q9UK99 471 aa10.81□□□□□ -0.68
VMA21-201ENST00000330374 ARID3CA6NKF2 412 aa10.8□□□□□ -0.68
VMA21-201ENST00000330374 CCDC18Q5T9S5 1454 aa10.8□□□□□ -0.68
VMA21-201ENST00000330374 FHAD1B1AJZ9 1412 aa10.8□□□□□ -0.68
VMA21-201ENST00000330374 PAK3O75914 559 aaPredicted RBP10.8□□□□□ -0.68
VMA21-201ENST00000330374 DCAF8L1A6NGE4 600 aa10.79□□□□□ -0.68
VMA21-201ENST00000330374 MTUS2Q5JR59 1369 aa10.79□□□□□ -0.68
VMA21-201ENST00000330374 PCF11O94913 1555 aaKnown RBP10.78□□□□□ -0.68
VMA21-201ENST00000330374 EIF4G2P78344 907 aaKnown RBP eCLIP10.78□□□□□ -0.68
VMA21-201ENST00000330374 VSIG10Q8N0Z9 540 aa10.78□□□□□ -0.68
VMA21-201ENST00000330374 NOP58Q9Y2X3 529 aaKnown RBP10.77□□□□□ -0.69
VMA21-201ENST00000330374 C11orf95C9JLR9 678 aaPredicted RBP10.77□□□□□ -0.69
VMA21-201ENST00000330374 PTPRKQ15262 1439 aa10.76□□□□□ -0.69
VMA21-201ENST00000330374 AQRO60306 1485 aaKnown RBP eCLIP10.75□□□□□ -0.69
VMA21-201ENST00000330374 FGD6Q6ZV73 1430 aa10.75□□□□□ -0.69
VMA21-201ENST00000330374 PRKRIP1Q9H875 184 aaPredicted RBP10.74□□□□□ -0.69
VMA21-201ENST00000330374 NPM2Q86SE8 214 aaKnown RBP10.74□□□□□ -0.69
VMA21-201ENST00000330374 MAP3K1Q13233 1512 aa10.74□□□□□ -0.69
VMA21-201ENST00000330374 UACAQ9BZF9 1416 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 CCDC136Q96JN2 1154 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 ZNF326Q5BKZ1 582 aaKnown RBP10.73□□□□□ -0.69
VMA21-201ENST00000330374 L3MBTL2Q969R5 705 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 MYT1LQ9UL68 1186 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 CFTRP13569 1480 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 FGD5Q6ZNL6 1462 aa10.73□□□□□ -0.69
VMA21-201ENST00000330374 RTL5Q5HYW3 569 aaPredicted RBP10.71□□□□□ -0.69
VMA21-201ENST00000330374 ANP32AP39687 249 aaKnown RBP10.7□□□□□ -0.7
VMA21-201ENST00000330374 AKNAQ7Z591 1439 aa10.7□□□□□ -0.7
VMA21-201ENST00000330374 ERICH6BQ5W0A0 696 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms