RNA–Protein interactions for RNA: ENST00000328111.6

DNMT3B-202, Transcript of DNA methyltransferase 3 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DNMT3B, Length 4,336 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3B-202ENST00000328111 RAPGEF2Q9Y4G8 1499 aa18.89■□□□□ 0.61
DNMT3B-202ENST00000328111 EIF4G2P78344 907 aaKnown RBP eCLIP18.88■□□□□ 0.61
DNMT3B-202ENST00000328111 TSPY4P0CV99 314 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 TSPY10P0CW01 314 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 MRS2Q9HD23 443 aa18.86■□□□□ 0.61
DNMT3B-202ENST00000328111 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.86■□□□□ 0.61
DNMT3B-202ENST00000328111 FHAD1B1AJZ9 1412 aa18.84■□□□□ 0.61
DNMT3B-202ENST00000328111 SALL2Q9Y467 1007 aaPredicted RBP18.82■□□□□ 0.6
DNMT3B-202ENST00000328111 IRX6P78412 446 aaPredicted RBP18.82■□□□□ 0.6
DNMT3B-202ENST00000328111 RTL5Q5HYW3 569 aaPredicted RBP18.81■□□□□ 0.6
DNMT3B-202ENST00000328111 TMC1Q8TDI8 760 aa18.78■□□□□ 0.6
DNMT3B-202ENST00000328111 CFDP1Q9UEE9 299 aaPredicted RBP18.76■□□□□ 0.59
DNMT3B-202ENST00000328111 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
DNMT3B-202ENST00000328111 SETD5Q9C0A6 1442 aa18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 RAB3GAP2Q9H2M9 1393 aa18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 CADPSQ9ULU8 1353 aa18.7■□□□□ 0.58
DNMT3B-202ENST00000328111 SENP3-EIF4A1A0A087X0R7 540 aa18.7■□□□□ 0.58
DNMT3B-202ENST00000328111 CHGAP10645 457 aaKnown RBP18.69■□□□□ 0.58
DNMT3B-202ENST00000328111 KCNH8Q96L42 1107 aa18.67■□□□□ 0.58
DNMT3B-202ENST00000328111 RGL3Q3MIN7 710 aa18.66■□□□□ 0.58
DNMT3B-202ENST00000328111 TIMELESSQ9UNS1 1208 aa18.65■□□□□ 0.58
DNMT3B-202ENST00000328111 SUPT16HQ9Y5B9 1047 aaKnown RBP18.64■□□□□ 0.57
DNMT3B-202ENST00000328111 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
DNMT3B-202ENST00000328111 ARHGAP35Q9NRY4 1499 aa18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 CANXP27824 592 aaKnown RBP18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 NPM2Q86SE8 214 aaKnown RBP18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 CCDC136Q96JN2 1154 aa18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 ANP32AP39687 249 aaKnown RBP18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 FHOD3Q2V2M9 1422 aa18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 DHX57Q6P158 1386 aaKnown RBP18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 FOXD1Q16676 465 aa18.59■□□□□ 0.57
DNMT3B-202ENST00000328111 PPP1R15AO75807 674 aaPredicted RBP18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 CARD11Q9BXL7 1154 aa18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 FMN1Q68DA7 1419 aa18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 NPM1P06748 294 aaKnown RBP eCLIP18.54■□□□□ 0.56
DNMT3B-202ENST00000328111 IGF1RP08069 1367 aa18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 HSPA5P11021 654 aaKnown RBP18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 PDS5BQ9NTI5 1447 aa18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 BCL11AQ9H165 835 aa18.5■□□□□ 0.55
DNMT3B-202ENST00000328111 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 WDR43Q15061 677 aaKnown RBP eCLIP18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 CCER2I3L3R5 266 aa18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 MPHOSPH9Q99550 1183 aa18.46■□□□□ 0.55
DNMT3B-202ENST00000328111 KIF21BO75037 1637 aa18.45■□□□□ 0.54
DNMT3B-202ENST00000328111 SYNJ1O43426 1573 aa18.44■□□□□ 0.54
DNMT3B-202ENST00000328111 FANCD2Q9BXW9 1451 aa18.43■□□□□ 0.54
DNMT3B-202ENST00000328111 NEFMP07197 916 aa18.43■□□□□ 0.54
DNMT3B-202ENST00000328111 DCAF11Q8TEB1 546 aa18.42■□□□□ 0.54
DNMT3B-202ENST00000328111 PKD2Q13563 968 aa18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 SENP3Q9H4L4 574 aaPredicted RBP18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 NCAPD3P42695 1498 aa18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
DNMT3B-202ENST00000328111 L3MBTL2Q969R5 705 aa18.39■□□□□ 0.53
DNMT3B-202ENST00000328111 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.53
DNMT3B-202ENST00000328111 NBR1Q14596 966 aa18.36■□□□□ 0.53
DNMT3B-202ENST00000328111 ZBTB47Q9UFB7 747 aaPredicted RBP18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 ARAP1Q96P48 1450 aa18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 RAD54L2Q9Y4B4 1467 aa18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 B4GALNT3Q6L9W6 998 aa18.34■□□□□ 0.53
DNMT3B-202ENST00000328111 PPP4R2Q9NY27 417 aa18.33■□□□□ 0.52
DNMT3B-202ENST00000328111 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.32■□□□□ 0.52
DNMT3B-202ENST00000328111 PHLDB1Q86UU1 1377 aa18.32■□□□□ 0.52
DNMT3B-202ENST00000328111 KNSTRNQ9Y448 316 aa18.31■□□□□ 0.52
DNMT3B-202ENST00000328111 SLC24A1O60721 1099 aa18.31■□□□□ 0.52
DNMT3B-202ENST00000328111 ESF1Q9H501 851 aaKnown RBP18.3■□□□□ 0.52
DNMT3B-202ENST00000328111 CC2D1BQ5T0F9 858 aaKnown RBP18.3■□□□□ 0.52
DNMT3B-202ENST00000328111 NUP155O75694 1391 aa18.27■□□□□ 0.52
DNMT3B-202ENST00000328111 PRXQ9BXM0 1461 aa18.27■□□□□ 0.51
DNMT3B-202ENST00000328111 CFTRP13569 1480 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 CARMIL2Q6F5E8 1435 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 ANP32EQ9BTT0 268 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 JPH4Q96JJ6 628 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 PLPPR3Q6T4P5 718 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 HNRNPMP52272 730 aaKnown RBP eCLIP18.22■□□□□ 0.519e-7■■□□□ 12.9
DNMT3B-202ENST00000328111 LRRC9Q6ZRR7 1453 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 ERICH3Q5RHP9 1530 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 CCDC18Q5T9S5 1454 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.5
DNMT3B-202ENST00000328111 RBM19Q9Y4C8 960 aaKnown RBP18.2■□□□□ 0.5
DNMT3B-202ENST00000328111 GAPVD1Q14C86 1478 aa18.19■□□□□ 0.5
DNMT3B-202ENST00000328111 TSHZ2Q9NRE2 1034 aa18.19■□□□□ 0.5
DNMT3B-202ENST00000328111 TMF1P82094 1093 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 TOP2BQ02880 1626 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 NEUROD2Q15784 382 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 FGD6Q6ZV73 1430 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 CUX1P39880 1505 aa18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 UPF2Q9HAU5 1272 aaKnown RBP18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 RRBP1Q9P2E9 1410 aaKnown RBP18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
DNMT3B-202ENST00000328111 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
DNMT3B-202ENST00000328111 ZNF644Q9H582 1327 aaPredicted RBP18.14■□□□□ 0.49
DNMT3B-202ENST00000328111 ROCK2O75116 1388 aaKnown RBP18.11■□□□□ 0.49
DNMT3B-202ENST00000328111 MYOM3Q5VTT5 1437 aa18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 PRKRIP1Q9H875 184 aaPredicted RBP18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 NESP48681 1621 aa18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 CASKIN1Q8WXD9 1431 aa18.08■□□□□ 0.49
DNMT3B-202ENST00000328111 EFCAB2Q5VUJ9 269 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms