RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 ABCA5Q8WWZ7 1642 aa29.46■■■□□ 2.31
SOX2-201ENST00000325404 CUL7Q14999 1698 aa29.45■■■□□ 2.31
SOX2-201ENST00000325404 RRBP1Q9P2E9 1410 aaKnown RBP29.44■■■□□ 2.3
SOX2-201ENST00000325404 TARBP1Q13395 1621 aaKnown RBP29.43■■■□□ 2.3
SOX2-201ENST00000325404 GAPVD1Q14C86 1478 aa29.43■■■□□ 2.3
SOX2-201ENST00000325404 ERCC6Q03468 1493 aa29.39■■■□□ 2.3
SOX2-201ENST00000325404 WDR62O43379 1518 aa29.39■■■□□ 2.29
SOX2-201ENST00000325404 ARHGAP35Q9NRY4 1499 aa29.38■■■□□ 2.29
SOX2-201ENST00000325404 DHX57Q6P158 1386 aaKnown RBP29.33■■■□□ 2.29
SOX2-201ENST00000325404 KANK4Q5T7N3 995 aaPredicted RBP29.33■■■□□ 2.29
SOX2-201ENST00000325404 MAP3K1Q13233 1512 aa29.31■■■□□ 2.28
SOX2-201ENST00000325404 GTF3C3Q9Y5Q9 886 aa29.28■■■□□ 2.28
SOX2-201ENST00000325404 IFT140Q96RY7 1462 aa29.27■■■□□ 2.28
SOX2-201ENST00000325404 CCNB3Q8WWL7 1395 aa29.22■■■□□ 2.27
SOX2-201ENST00000325404 THOC2Q8NI27 1593 aaKnown RBP29.21■■■□□ 2.27
SOX2-201ENST00000325404 AQRO60306 1485 aaKnown RBP eCLIP29.2■■■□□ 2.27
SOX2-201ENST00000325404 MIER1Q8N108 512 aa29.19■■■□□ 2.26
SOX2-201ENST00000325404 PBRM1Q86U86 1689 aa29.18■■■□□ 2.26
SOX2-201ENST00000325404 CTTNBP2Q8WZ74 1663 aa29.16■■■□□ 2.26
SOX2-201ENST00000325404 GRIN2BQ13224 1484 aa29.14■■■□□ 2.26
SOX2-201ENST00000325404 TIAM1Q13009 1591 aa29.12■■■□□ 2.25
SOX2-201ENST00000325404 ZNF608Q9ULD9 1512 aaPredicted RBP29.12■■■□□ 2.25
SOX2-201ENST00000325404 FHAD1B1AJZ9 1412 aa29.11■■■□□ 2.25
SOX2-201ENST00000325404 EFCAB5A4FU69 1503 aa29.08■■■□□ 2.25
SOX2-201ENST00000325404 ADAMTS12P58397 1594 aa29.07■■■□□ 2.24
SOX2-201ENST00000325404 LRRC9Q6ZRR7 1453 aa29■■■□□ 2.23
SOX2-201ENST00000325404 EIF4G3O43432 1585 aaKnown RBP29■■■□□ 2.23
SOX2-201ENST00000325404 P3H3Q8IVL6 736 aa28.98■■■□□ 2.23
SOX2-201ENST00000325404 FHOD3Q2V2M9 1422 aa28.97■■■□□ 2.23
SOX2-201ENST00000325404 CFAP43Q8NDM7 1665 aa28.95■■■□□ 2.22
SOX2-201ENST00000325404 YTHDC1Q96MU7 727 aaKnown RBP28.93■■■□□ 2.22
SOX2-201ENST00000325404 SNAPC4Q5SXM2 1469 aa28.92■■■□□ 2.22
SOX2-201ENST00000325404 SAMD9Q5K651 1589 aa28.9■■■□□ 2.22
SOX2-201ENST00000325404 RAB3GAP2Q9H2M9 1393 aa28.89■■■□□ 2.22
SOX2-201ENST00000325404 PCF11O94913 1555 aaKnown RBP28.87■■■□□ 2.21
SOX2-201ENST00000325404 SETD5Q9C0A6 1442 aa28.87■■■□□ 2.21
SOX2-201ENST00000325404 FMN1Q68DA7 1419 aa28.85■■■□□ 2.21
SOX2-201ENST00000325404 MAGI1Q96QZ7 1491 aaPredicted RBP28.84■■■□□ 2.21
SOX2-201ENST00000325404 IQGAP2Q13576 1575 aa28.83■■■□□ 2.21
SOX2-201ENST00000325404 MAPKBP1O60336 1514 aa28.83■■■□□ 2.21
SOX2-201ENST00000325404 FYCO1Q9BQS8 1478 aa28.83■■■□□ 2.21
SOX2-201ENST00000325404 PHLDB1Q86UU1 1377 aa28.82■■■□□ 2.2
SOX2-201ENST00000325404 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.82■■■□□ 2.2
SOX2-201ENST00000325404 CASKIN1Q8WXD9 1431 aa28.82■■■□□ 2.2
SOX2-201ENST00000325404 GRIN2AQ12879 1464 aa28.79■■■□□ 2.2
SOX2-201ENST00000325404 ATP1B4Q9UN42 357 aaPredicted RBP28.76■■■□□ 2.19
SOX2-201ENST00000325404 SYNJ2O15056 1496 aa28.74■■■□□ 2.19
SOX2-201ENST00000325404 ITGAEP38570 1179 aa28.73■■■□□ 2.19
SOX2-201ENST00000325404 KIAA0586Q9BVV6 1533 aa28.72■■■□□ 2.19
SOX2-201ENST00000325404 TIMELESSQ9UNS1 1208 aa28.72■■■□□ 2.19
SOX2-201ENST00000325404 CHMP7Q8WUX9 453 aaPredicted RBP28.71■■■□□ 2.19
SOX2-201ENST00000325404 UGGT2Q9NYU1 1516 aa28.69■■■□□ 2.18
SOX2-201ENST00000325404 FBLN2P98095 1184 aa28.62■■■□□ 2.17
SOX2-201ENST00000325404 FAM50AQ14320 339 aaKnown RBP28.6■■■□□ 2.17
SOX2-201ENST00000325404 CEP170Q5SW79 1584 aa28.58■■■□□ 2.17
SOX2-201ENST00000325404 NUP160Q12769 1436 aa28.55■■■□□ 2.16
SOX2-201ENST00000325404 DISP1Q96F81 1524 aa28.53■■■□□ 2.16
SOX2-201ENST00000325404 KIAA0556O60303 1618 aa28.53■■■□□ 2.16
SOX2-201ENST00000325404 FGD6Q6ZV73 1430 aa28.52■■■□□ 2.16
SOX2-201ENST00000325404 HECW1Q76N89 1606 aa28.49■■■□□ 2.15
SOX2-201ENST00000325404 LRRIQ1Q96JM4 1722 aa28.48■■■□□ 2.15
SOX2-201ENST00000325404 MTUS2Q5JR59 1369 aa28.48■■■□□ 2.15
SOX2-201ENST00000325404 CCDC18Q5T9S5 1454 aa28.47■■■□□ 2.15
SOX2-201ENST00000325404 HFM1A2PYH4 1435 aa28.41■■■□□ 2.14
SOX2-201ENST00000325404 SIN3AQ96ST3 1273 aa28.41■■■□□ 2.14
SOX2-201ENST00000325404 JPH4Q96JJ6 628 aa28.39■■■□□ 2.14
SOX2-201ENST00000325404 EPRSP07814 1512 aaKnown RBP28.39■■■□□ 2.13
SOX2-201ENST00000325404 EHBP1L1Q8N3D4 1523 aa28.39■■■□□ 2.13
SOX2-201ENST00000325404 PPP1R15AO75807 674 aaPredicted RBP28.38■■■□□ 2.13
SOX2-201ENST00000325404 CARMIL2Q6F5E8 1435 aa28.38■■■□□ 2.13
SOX2-201ENST00000325404 MYOM3Q5VTT5 1437 aa28.35■■■□□ 2.13
SOX2-201ENST00000325404 UACAQ9BZF9 1416 aa28.35■■■□□ 2.13
SOX2-201ENST00000325404 MYT1Q01538 1121 aa28.33■■■□□ 2.13
SOX2-201ENST00000325404 NCOA2Q15596 1464 aa28.33■■■□□ 2.13
SOX2-201ENST00000325404 SUPT6HQ7KZ85 1726 aaKnown RBP28.33■■■□□ 2.13
SOX2-201ENST00000325404 PTPN23Q9H3S7 1636 aa28.32■■■□□ 2.12
SOX2-201ENST00000325404 ARHGEF11O15085 1522 aa28.3■■■□□ 2.12
SOX2-201ENST00000325404 CDK13Q14004 1512 aaKnown RBP28.3■■■□□ 2.12
SOX2-201ENST00000325404 SUPT16HQ9Y5B9 1047 aaKnown RBP28.3■■■□□ 2.12
SOX2-201ENST00000325404 RAPGEF6Q8TEU7 1601 aa28.3■■■□□ 2.12
SOX2-201ENST00000325404 MAGI3Q5TCQ9 1506 aa28.29■■■□□ 2.12
SOX2-201ENST00000325404 CHD1O14646 1710 aa28.29■■■□□ 2.12
SOX2-201ENST00000325404 PTPRKQ15262 1439 aa28.28■■■□□ 2.12
SOX2-201ENST00000325404 NUP153P49790 1475 aaKnown RBP28.26■■■□□ 2.11
SOX2-201ENST00000325404 NAIPQ13075 1403 aa28.25■■■□□ 2.11
SOX2-201ENST00000325404 ARID3CA6NKF2 412 aa28.23■■■□□ 2.11
SOX2-201ENST00000325404 TCOF1Q13428 1488 aaKnown RBP28.21■■■□□ 2.11
SOX2-201ENST00000325404 DDX10Q13206 875 aaKnown RBP28.21■■■□□ 2.11
SOX2-201ENST00000325404 TONSLQ96HA7 1378 aa28.21■■■□□ 2.11
SOX2-201ENST00000325404 CCER2I3L3R5 266 aa28.2■■■□□ 2.1
SOX2-201ENST00000325404 PLB1Q6P1J6 1458 aa28.19■■■□□ 2.1
SOX2-201ENST00000325404 AKNAQ7Z591 1439 aa28.17■■■□□ 2.1
SOX2-201ENST00000325404 PRG4Q92954 1404 aaPredicted RBP28.17■■■□□ 2.1
SOX2-201ENST00000325404 CDK11AQ9UQ88 783 aaPredicted RBP28.15■■■□□ 2.1
SOX2-201ENST00000325404 KCNH8Q96L42 1107 aa28.12■■■□□ 2.09
SOX2-201ENST00000325404 GCC2Q8IWJ2 1684 aa28.1■■■□□ 2.09
SOX2-201ENST00000325404 MIA2Q96PC5 1412 aa28.09■■■□□ 2.09
SOX2-201ENST00000325404 ABCA8O94911 1581 aa28.08■■■□□ 2.09
SOX2-201ENST00000325404 SHROOM2Q13796 1616 aa28.07■■■□□ 2.08
SOX2-201ENST00000325404 KDM5BQ9UGL1 1544 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms