RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 NPM1P06748 294 aaKnown RBP eCLIP13.41□□□□□ -0.26
CSTF3-201ENST00000323959 RAD54L2Q9Y4B4 1467 aa13.39□□□□□ -0.27
CSTF3-201ENST00000323959 CERKQ8TCT0 537 aa13.39□□□□□ -0.27
CSTF3-201ENST00000323959 NUP160Q12769 1436 aa13.38□□□□□ -0.27
CSTF3-201ENST00000323959 PPRC1Q5VV67 1664 aaKnown RBP13.38□□□□□ -0.27
CSTF3-201ENST00000323959 GLI2P10070 1586 aa13.36□□□□□ -0.27
CSTF3-201ENST00000323959 PCF11O94913 1555 aaKnown RBP13.33□□□□□ -0.28
CSTF3-201ENST00000323959 GRIN2AQ12879 1464 aa13.33□□□□□ -0.28
CSTF3-201ENST00000323959 ADCY10Q96PN6 1610 aa13.32□□□□□ -0.28
CSTF3-201ENST00000323959 TEX14Q8IWB6 1497 aa13.25□□□□□ -0.29
CSTF3-201ENST00000323959 FGD5Q6ZNL6 1462 aa13.25□□□□□ -0.29
CSTF3-201ENST00000323959 ABCA5Q8WWZ7 1642 aa13.24□□□□□ -0.29
CSTF3-201ENST00000323959 PRG4Q92954 1404 aaPredicted RBP13.23□□□□□ -0.29
CSTF3-201ENST00000323959 ADAMTS12P58397 1594 aa13.23□□□□□ -0.29
CSTF3-201ENST00000323959 COL17A1Q9UMD9 1497 aaPredicted RBP13.22□□□□□ -0.29
CSTF3-201ENST00000323959 PTPRMP28827 1452 aa13.21□□□□□ -0.29
CSTF3-201ENST00000323959 KIAA0586Q9BVV6 1533 aa13.2□□□□□ -0.3
CSTF3-201ENST00000323959 ADAMTSL3P82987 1691 aa13.2□□□□□ -0.3
CSTF3-201ENST00000323959 PLB1Q6P1J6 1458 aa13.18□□□□□ -0.3
CSTF3-201ENST00000323959 MAP3K4Q9Y6R4 1608 aa13.18□□□□□ -0.3
CSTF3-201ENST00000323959 CCDC88BA6NC98 1476 aa13.15□□□□□ -0.3
CSTF3-201ENST00000323959 IQSEC2Q5JU85 1478 aa13.15□□□□□ -0.3
CSTF3-201ENST00000323959 KIF21BO75037 1637 aa13.13□□□□□ -0.31
CSTF3-201ENST00000323959 ABCA10Q8WWZ4 1543 aa13.12□□□□□ -0.31
CSTF3-201ENST00000323959 FHAD1B1AJZ9 1412 aa13.1□□□□□ -0.31
CSTF3-201ENST00000323959 JPH4Q96JJ6 628 aa13.06□□□□□ -0.32
CSTF3-201ENST00000323959 ASXL2Q76L83 1435 aa13.06□□□□□ -0.32
CSTF3-201ENST00000323959 RUSC2Q8N2Y8 1516 aa13.06□□□□□ -0.32
CSTF3-201ENST00000323959 CUX1P39880 1505 aa13.05□□□□□ -0.32
CSTF3-201ENST00000323959 ABCC2Q92887 1545 aa13.05□□□□□ -0.32
CSTF3-201ENST00000323959 EPRSP07814 1512 aaKnown RBP13.03□□□□□ -0.32
CSTF3-201ENST00000323959 BCORL1Q5H9F3 1711 aa13.02□□□□□ -0.33
CSTF3-201ENST00000323959 MED1Q15648 1581 aaPredicted RBP13□□□□□ -0.33
CSTF3-201ENST00000323959 MADDQ8WXG6 1647 aa12.99□□□□□ -0.33
CSTF3-201ENST00000323959 UHRF1BP1LA0JNW5 1464 aa12.98□□□□□ -0.33
CSTF3-201ENST00000323959 ERICH3Q5RHP9 1530 aa12.97□□□□□ -0.33
CSTF3-201ENST00000323959 DMRT2Q9Y5R5 561 aa12.97□□□□□ -0.33
CSTF3-201ENST00000323959 MAGI3Q5TCQ9 1506 aa12.96□□□□□ -0.33
CSTF3-201ENST00000323959 CUL7Q14999 1698 aa12.96□□□□□ -0.33
CSTF3-201ENST00000323959 RIMS1Q86UR5 1692 aaKnown RBP12.92□□□□□ -0.34
CSTF3-201ENST00000323959 CFAP43Q8NDM7 1665 aa12.92□□□□□ -0.34
CSTF3-201ENST00000323959 HSPA2P54652 639 aa12.9□□□□□ -0.34
CSTF3-201ENST00000323959 PTPRTO14522 1441 aa12.9□□□□□ -0.34
CSTF3-201ENST00000323959 YEATS2Q9ULM3 1422 aa12.9□□□□□ -0.34
CSTF3-201ENST00000323959 ARAP3Q8WWN8 1544 aa12.9□□□□□ -0.35
CSTF3-201ENST00000323959 LTBP4Q8N2S1 1624 aa12.88□□□□□ -0.35
CSTF3-201ENST00000323959 PTPRGP23470 1445 aa12.87□□□□□ -0.35
CSTF3-201ENST00000323959 PREX1Q8TCU6 1659 aa12.86□□□□□ -0.35
CSTF3-201ENST00000323959 KDM5BQ9UGL1 1544 aa12.85□□□□□ -0.35
CSTF3-201ENST00000323959 STRCQ7RTU9 1775 aa12.85□□□□□ -0.35
CSTF3-201ENST00000323959 PHLDB1Q86UU1 1377 aa12.81□□□□□ -0.36
CSTF3-201ENST00000323959 TNIKQ9UKE5 1360 aa12.8□□□□□ -0.36
CSTF3-201ENST00000323959 ZCCHC11Q5TAX3 1644 aaKnown RBP12.8□□□□□ -0.36
CSTF3-201ENST00000323959 WDR7Q9Y4E6 1490 aa12.78□□□□□ -0.36
CSTF3-201ENST00000323959 CD109Q6YHK3 1445 aa12.78□□□□□ -0.36
CSTF3-201ENST00000323959 UACAQ9BZF9 1416 aa12.78□□□□□ -0.36
CSTF3-201ENST00000323959 TTC37Q6PGP7 1564 aa12.78□□□□□ -0.36
CSTF3-201ENST00000323959 WRNQ14191 1432 aaPredicted RBP eCLIP12.76□□□□□ -0.37
CSTF3-201ENST00000323959 PHF23Q9BUL5 403 aaPredicted RBP12.76□□□□□ -0.37
CSTF3-201ENST00000323959 CARMIL2Q6F5E8 1435 aa12.74□□□□□ -0.37
CSTF3-201ENST00000323959 POGZQ7Z3K3 1410 aa12.74□□□□□ -0.37
CSTF3-201ENST00000323959 ARHGEF40Q8TER5 1519 aa12.73□□□□□ -0.37
CSTF3-201ENST00000323959 FER1L4A9Z1Z3 1794 aa12.69□□□□□ -0.38
CSTF3-201ENST00000323959 UBAP1LF5GYI3 381 aa12.69□□□□□ -0.38
CSTF3-201ENST00000323959 FANCAO15360 1455 aa12.69□□□□□ -0.38
CSTF3-201ENST00000323959 ARID4BQ4LE39 1312 aaPredicted RBP12.68□□□□□ -0.38
CSTF3-201ENST00000323959 FRMPD1Q5SYB0 1578 aa12.65□□□□□ -0.38
CSTF3-201ENST00000323959 BIVM-ERCC5R4GMW8 1640 aa12.65□□□□□ -0.38
CSTF3-201ENST00000323959 UHRF1BP1Q6BDS2 1440 aa12.64□□□□□ -0.39
CSTF3-201ENST00000323959 NEO1Q92859 1461 aa12.63□□□□□ -0.39
CSTF3-201ENST00000323959 HSPA1LP34931 641 aa12.6□□□□□ -0.39
CSTF3-201ENST00000323959 AKNAQ7Z591 1439 aa12.58□□□□□ -0.4
CSTF3-201ENST00000323959 ARHGEF12Q9NZN5 1544 aa12.58□□□□□ -0.4
CSTF3-201ENST00000323959 SETD1BQ9UPS6 1966 aaKnown RBP12.57□□□□□ -0.4
CSTF3-201ENST00000323959 NCOA1Q15788 1441 aa12.57□□□□□ -0.4
CSTF3-201ENST00000323959 ZMYM4Q5VZL5 1548 aa12.54□□□□□ -0.4
CSTF3-201ENST00000323959 ABCA9Q8IUA7 1624 aa12.54□□□□□ -0.4
CSTF3-201ENST00000323959 EFCAB5A4FU69 1503 aa12.54□□□□□ -0.4
CSTF3-201ENST00000323959 KIAA0556O60303 1618 aa12.53□□□□□ -0.4
CSTF3-201ENST00000323959 IQGAP2Q13576 1575 aa12.53□□□□□ -0.4
CSTF3-201ENST00000323959 DISP1Q96F81 1524 aa12.51□□□□□ -0.41
CSTF3-201ENST00000323959 RICTORQ6R327 1708 aa12.51□□□□□ -0.41
CSTF3-201ENST00000323959 MAGI2Q86UL8 1455 aa12.5□□□□□ -0.41
CSTF3-201ENST00000323959 FHOD3Q2V2M9 1422 aa12.49□□□□□ -0.41
CSTF3-201ENST00000323959 ZFYVE16Q7Z3T8 1539 aa12.49□□□□□ -0.41
CSTF3-201ENST00000323959 PLPPR3Q6T4P5 718 aa12.48□□□□□ -0.41
CSTF3-201ENST00000323959 SIGLEC1Q9BZZ2 1709 aa12.48□□□□□ -0.41
CSTF3-201ENST00000323959 TOM1O60784 492 aa12.47□□□□□ -0.41
CSTF3-201ENST00000323959 RAPGEF3O95398 923 aa12.47□□□□□ -0.41
CSTF3-201ENST00000323959 TTBK1Q5TCY1 1321 aaPredicted RBP12.47□□□□□ -0.41
CSTF3-201ENST00000323959 RGS17Q9UGC6 210 aaPredicted RBP12.46□□□□□ -0.41
CSTF3-201ENST00000323959 CPS1P31327 1500 aa12.45□□□□□ -0.42
CSTF3-201ENST00000323959 UGGT2Q9NYU1 1516 aa12.45□□□□□ -0.42
CSTF3-201ENST00000323959 CFAP74Q9C0B2 1584 aa12.45□□□□□ -0.42
CSTF3-201ENST00000323959 DENND4BO75064 1496 aaPredicted RBP12.45□□□□□ -0.42
CSTF3-201ENST00000323959 PTPRKQ15262 1439 aa12.43□□□□□ -0.42
CSTF3-201ENST00000323959 ABCA8O94911 1581 aa12.43□□□□□ -0.42
CSTF3-201ENST00000323959 SETD1AO15047 1707 aaKnown RBP12.42□□□□□ -0.42
CSTF3-201ENST00000323959 KCNH8Q96L42 1107 aa12.42□□□□□ -0.42
CSTF3-201ENST00000323959 ZNF335Q9H4Z2 1342 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms