RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 NISCHQ9Y2I1 1504 aa18.02■□□□□ 0.48
CSTF3-201ENST00000323959 ABCC9O60706 1549 aa17.75■□□□□ 0.43
CSTF3-201ENST00000323959 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
CSTF3-201ENST00000323959 DNAJC5Q9H3Z4 198 aa17.3■□□□□ 0.36
CSTF3-201ENST00000323959 CCDC180Q9P1Z9 1646 aa16.93■□□□□ 0.3
CSTF3-201ENST00000323959 RB1CC1Q8TDY2 1594 aa16.61■□□□□ 0.25
CSTF3-201ENST00000323959 NACADO15069 1562 aa16.23■□□□□ 0.19
CSTF3-201ENST00000323959 CECR2Q9BXF3 1484 aa16.23■□□□□ 0.19
CSTF3-201ENST00000323959 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
CSTF3-201ENST00000323959 UNC13AQ9UPW8 1703 aa16.14■□□□□ 0.18
CSTF3-201ENST00000323959 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
CSTF3-201ENST00000323959 CUX2O14529 1486 aa16.1■□□□□ 0.17
CSTF3-201ENST00000323959 BICRAQ9NZM4 1560 aa16.09■□□□□ 0.17
CSTF3-201ENST00000323959 SHROOM4Q9ULL8 1493 aa16.05■□□□□ 0.16
CSTF3-201ENST00000323959 TRIM41Q8WV44 630 aa15.81■□□□□ 0.12
CSTF3-201ENST00000323959 EIF4G1Q04637 1599 aaKnown RBP15.79■□□□□ 0.12
CSTF3-201ENST00000323959 MYO15BQ96JP2 1530 aa15.7■□□□□ 0.1
CSTF3-201ENST00000323959 ERCC6Q03468 1493 aa15.5■□□□□ 0.07
CSTF3-201ENST00000323959 AEBP2Q6ZN18 517 aaPredicted RBP15.34■□□□□ 0.05
CSTF3-201ENST00000323959 DCAF8L2P0C7V8 631 aa15.31■□□□□ 0.04
CSTF3-201ENST00000323959 THOC2Q8NI27 1593 aaKnown RBP15.2■□□□□ 0.02
CSTF3-201ENST00000323959 SCRIBQ14160 1630 aa15.1■□□□□ 0.01
CSTF3-201ENST00000323959 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
CSTF3-201ENST00000323959 DCAF1Q9Y4B6 1507 aa15□□□□□ -0.01
CSTF3-201ENST00000323959 RIMBP3CA6NJZ7 1639 aa14.96□□□□□ -0.01
CSTF3-201ENST00000323959 RIMBP3BA6NNM3 1639 aa14.96□□□□□ -0.01
CSTF3-201ENST00000323959 RIMBP3Q9UFD9 1639 aa14.96□□□□□ -0.01
CSTF3-201ENST00000323959 NCAPD3P42695 1498 aa14.93□□□□□ -0.02
CSTF3-201ENST00000323959 OSCARQ8IYS5 282 aa14.92□□□□□ -0.02
CSTF3-201ENST00000323959 ILDR1Q86SU0 546 aaPredicted RBP14.9□□□□□ -0.02
CSTF3-201ENST00000323959 NESP48681 1621 aa14.87□□□□□ -0.03
CSTF3-201ENST00000323959 LAMC3Q9Y6N6 1575 aa14.84□□□□□ -0.03
CSTF3-201ENST00000323959 SMARCA2P51531 1590 aa14.83□□□□□ -0.04
CSTF3-201ENST00000323959 KIF21AQ7Z4S6 1674 aa14.78□□□□□ -0.04
CSTF3-201ENST00000323959 HMGXB3Q12766 1538 aa14.78□□□□□ -0.04
CSTF3-201ENST00000323959 ARHGEF11O15085 1522 aa14.76□□□□□ -0.05
CSTF3-201ENST00000323959 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
CSTF3-201ENST00000323959 WDR62O43379 1518 aa14.73□□□□□ -0.05
CSTF3-201ENST00000323959 PDS5BQ9NTI5 1447 aa14.72□□□□□ -0.05
CSTF3-201ENST00000323959 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
CSTF3-201ENST00000323959 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
CSTF3-201ENST00000323959 ATAD2BQ9ULI0 1458 aa14.63□□□□□ -0.07
CSTF3-201ENST00000323959 ARAP1Q96P48 1450 aa14.52□□□□□ -0.08
CSTF3-201ENST00000323959 CYB5RLQ6IPT4 315 aa14.51□□□□□ -0.09
CSTF3-201ENST00000323959 BAZ1BQ9UIG0 1483 aaKnown RBP14.42□□□□□ -0.1
CSTF3-201ENST00000323959 RSF1Q96T23 1441 aaPredicted RBP14.41□□□□□ -0.1
CSTF3-201ENST00000323959 SMARCA4P51532 1647 aa14.35□□□□□ -0.11
CSTF3-201ENST00000323959 CEP164Q9UPV0 1460 aa14.34□□□□□ -0.11
CSTF3-201ENST00000323959 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.12
CSTF3-201ENST00000323959 PEG3Q9GZU2 1588 aa14.33□□□□□ -0.12
CSTF3-201ENST00000323959 ERCC6L2Q5T890 1561 aa14.32□□□□□ -0.12
CSTF3-201ENST00000323959 FBXO41Q8TF61 875 aa14.2□□□□□ -0.14
CSTF3-201ENST00000323959 CHD1O14646 1710 aa14.18□□□□□ -0.14
CSTF3-201ENST00000323959 LMTK3Q96Q04 1460 aa14.17□□□□□ -0.14
CSTF3-201ENST00000323959 FANCD2Q9BXW9 1451 aa14.16□□□□□ -0.14
CSTF3-201ENST00000323959 IFT140Q96RY7 1462 aa14.15□□□□□ -0.14
CSTF3-201ENST00000323959 SOCS7O14512 581 aa14.14□□□□□ -0.15
CSTF3-201ENST00000323959 URB2Q14146 1524 aaKnown RBP14.12□□□□□ -0.15
CSTF3-201ENST00000323959 KDM4FA0A1W2PPD8 638 aa14.09□□□□□ -0.15
CSTF3-201ENST00000323959 CLASP1Q7Z460 1538 aa14.07□□□□□ -0.16
CSTF3-201ENST00000323959 ZNF608Q9ULD9 1512 aaPredicted RBP14.06□□□□□ -0.16
CSTF3-201ENST00000323959 EIF4G3O43432 1585 aaKnown RBP14.06□□□□□ -0.16
CSTF3-201ENST00000323959 HECW2Q9P2P5 1572 aa14.03□□□□□ -0.16
CSTF3-201ENST00000323959 KIF13AQ9H1H9 1805 aa13.97□□□□□ -0.17
CSTF3-201ENST00000323959 CFTRP13569 1480 aa13.94□□□□□ -0.18
CSTF3-201ENST00000323959 SYNJ1O43426 1573 aa13.94□□□□□ -0.18
CSTF3-201ENST00000323959 GAPVD1Q14C86 1478 aa13.91□□□□□ -0.18
CSTF3-201ENST00000323959 PRDM2Q13029 1718 aa13.87□□□□□ -0.19
CSTF3-201ENST00000323959 KDM6BO15054 1643 aa13.85□□□□□ -0.19
CSTF3-201ENST00000323959 ABCC8Q09428 1581 aa13.82□□□□□ -0.2
CSTF3-201ENST00000323959 ILDR2Q71H61 639 aa13.82□□□□□ -0.2
CSTF3-201ENST00000323959 ADGRL1O94910 1474 aa13.81□□□□□ -0.2
CSTF3-201ENST00000323959 WDR97A6NE52 1622 aa13.81□□□□□ -0.2
CSTF3-201ENST00000323959 SYNJ2O15056 1496 aa13.81□□□□□ -0.2
CSTF3-201ENST00000323959 MROH2BQ7Z745 1585 aa13.8□□□□□ -0.2
CSTF3-201ENST00000323959 TARBP1Q13395 1621 aaKnown RBP13.79□□□□□ -0.2
CSTF3-201ENST00000323959 TOPBP1Q92547 1522 aa13.78□□□□□ -0.2
CSTF3-201ENST00000323959 FBLN2P98095 1184 aa13.77□□□□□ -0.2
CSTF3-201ENST00000323959 DISP3Q9P2K9 1392 aa13.75□□□□□ -0.21
CSTF3-201ENST00000323959 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.21
CSTF3-201ENST00000323959 ABCC10Q5T3U5 1492 aa13.72□□□□□ -0.21
CSTF3-201ENST00000323959 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.21
CSTF3-201ENST00000323959 DNMBPQ6XZF7 1577 aa13.7□□□□□ -0.22
CSTF3-201ENST00000323959 SPATA31D1Q6ZQQ2 1576 aa13.68□□□□□ -0.22
CSTF3-201ENST00000323959 SNAPC4Q5SXM2 1469 aa13.68□□□□□ -0.22
CSTF3-201ENST00000323959 DIP2BQ9P265 1576 aa13.66□□□□□ -0.22
CSTF3-201ENST00000323959 MAPKBP1O60336 1514 aa13.64□□□□□ -0.23
CSTF3-201ENST00000323959 TOP2BQ02880 1626 aa13.62□□□□□ -0.23
CSTF3-201ENST00000323959 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
CSTF3-201ENST00000323959 FAM69CQ0P6D2 419 aa13.58□□□□□ -0.24
CSTF3-201ENST00000323959 GRIN2BQ13224 1484 aa13.54□□□□□ -0.24
CSTF3-201ENST00000323959 WIZO95785 1651 aa13.53□□□□□ -0.24
CSTF3-201ENST00000323959 SHROOM2Q13796 1616 aa13.53□□□□□ -0.24
CSTF3-201ENST00000323959 CEP170Q5SW79 1584 aa13.52□□□□□ -0.24
CSTF3-201ENST00000323959 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
CSTF3-201ENST00000323959 TSPOAP1O95153 1857 aa13.46□□□□□ -0.25
CSTF3-201ENST00000323959 TOP2AP11388 1531 aaKnown RBP13.43□□□□□ -0.26
CSTF3-201ENST00000323959 TDRD9Q8NDG6 1382 aaKnown RBP13.43□□□□□ -0.26
CSTF3-201ENST00000323959 PBRM1Q86U86 1689 aa13.42□□□□□ -0.26
CSTF3-201ENST00000323959 SOGA1O94964 1423 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms