RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 FHAD1B1AJZ9 1412 aa6.61□□□□□ -1.35
PTPN13-201ENST00000316707 TONSLQ96HA7 1378 aa6.61□□□□□ -1.35
PTPN13-201ENST00000316707 SYNJ1O43426 1573 aa6.6□□□□□ -1.35
PTPN13-201ENST00000316707 ATAD2BQ9ULI0 1458 aa6.6□□□□□ -1.35
PTPN13-201ENST00000316707 TRIM52Q96A61 297 aa6.59□□□□□ -1.35
PTPN13-201ENST00000316707 KCNH8Q96L42 1107 aa6.58□□□□□ -1.36
PTPN13-201ENST00000316707 HNRNPUQ00839 825 aaKnown RBP eCLIP6.58□□□□□ -1.36
PTPN13-201ENST00000316707 TOP2BQ02880 1626 aa6.56□□□□□ -1.36
PTPN13-201ENST00000316707 FAM50AQ14320 339 aaKnown RBP6.56□□□□□ -1.36
PTPN13-201ENST00000316707 SIN3AQ96ST3 1273 aa6.56□□□□□ -1.36
PTPN13-201ENST00000316707 ARHGAP35Q9NRY4 1499 aa6.55□□□□□ -1.36
PTPN13-201ENST00000316707 RTL5Q5HYW3 569 aaPredicted RBP6.55□□□□□ -1.36
PTPN13-201ENST00000316707 MAPKBP1O60336 1514 aa6.55□□□□□ -1.36
PTPN13-201ENST00000316707 PABPN1Q86U42 306 aaKnown RBP eCLIP6.54□□□□□ -1.36
PTPN13-201ENST00000316707 MSH5O43196 834 aa6.53□□□□□ -1.36
PTPN13-201ENST00000316707 LRRC9Q6ZRR7 1453 aa6.53□□□□□ -1.36
PTPN13-201ENST00000316707 PHLDB1Q86UU1 1377 aa6.52□□□□□ -1.37
PTPN13-201ENST00000316707 ANP32AP39687 249 aaKnown RBP6.52□□□□□ -1.37
PTPN13-201ENST00000316707 EIF4G2P78344 907 aaKnown RBP eCLIP6.52□□□□□ -1.37
PTPN13-201ENST00000316707 NOP58Q9Y2X3 529 aaKnown RBP6.52□□□□□ -1.37
PTPN13-201ENST00000316707 CARMIL1Q5VZK9 1371 aa6.52□□□□□ -1.37
PTPN13-201ENST00000316707 IGF1RP08069 1367 aa6.51□□□□□ -1.37
PTPN13-201ENST00000316707 UACAQ9BZF9 1416 aa6.51□□□□□ -1.37
PTPN13-201ENST00000316707 ZBED9Q6R2W3 1325 aa6.51□□□□□ -1.37
PTPN13-201ENST00000316707 DEKP35659 375 aaKnown RBP6.51□□□□□ -1.37
PTPN13-201ENST00000316707 TIAM1Q13009 1591 aa6.5□□□□□ -1.37
PTPN13-201ENST00000316707 NCAPD3P42695 1498 aa6.5□□□□□ -1.37
PTPN13-201ENST00000316707 HFM1A2PYH4 1435 aa6.49□□□□□ -1.37
PTPN13-201ENST00000316707 WDR97A6NE52 1622 aa6.49□□□□□ -1.37
PTPN13-201ENST00000316707 FMN1Q68DA7 1419 aa6.49□□□□□ -1.37
PTPN13-201ENST00000316707 USP35Q9P2H5 1018 aa6.48□□□□□ -1.37
PTPN13-201ENST00000316707 MRS2Q9HD23 443 aa6.48□□□□□ -1.37
PTPN13-201ENST00000316707 AQRO60306 1485 aaKnown RBP eCLIP6.48□□□□□ -1.37
PTPN13-201ENST00000316707 ZBTB47Q9UFB7 747 aaPredicted RBP6.48□□□□□ -1.37
PTPN13-201ENST00000316707 PRKRIP1Q9H875 184 aaPredicted RBP6.47□□□□□ -1.37
PTPN13-201ENST00000316707 BIVM-ERCC5R4GMW8 1640 aa6.47□□□□□ -1.37
PTPN13-201ENST00000316707 CFTRP13569 1480 aa6.47□□□□□ -1.37
PTPN13-201ENST00000316707 MTUS2Q5JR59 1369 aa6.47□□□□□ -1.37
PTPN13-201ENST00000316707 IPO9Q96P70 1041 aaKnown RBP6.47□□□□□ -1.37
PTPN13-201ENST00000316707 CASKIN1Q8WXD9 1431 aa6.46□□□□□ -1.37
PTPN13-201ENST00000316707 FGD6Q6ZV73 1430 aa6.46□□□□□ -1.37
PTPN13-201ENST00000316707 CCDC18Q5T9S5 1454 aa6.46□□□□□ -1.37
PTPN13-201ENST00000316707 ATP1B4Q9UN42 357 aaPredicted RBP6.46□□□□□ -1.38
PTPN13-201ENST00000316707 HSPA5P11021 654 aaKnown RBP6.46□□□□□ -1.38
PTPN13-201ENST00000316707 CCDC136Q96JN2 1154 aa6.45□□□□□ -1.38
PTPN13-201ENST00000316707 HIRIP3Q9BW71 556 aaPredicted RBP6.45□□□□□ -1.38
PTPN13-201ENST00000316707 CNTLNQ9NXG0 1405 aa6.45□□□□□ -1.38
PTPN13-201ENST00000316707 PPM1GO15355 546 aaPredicted RBP6.45□□□□□ -1.38
PTPN13-201ENST00000316707 FYCO1Q9BQS8 1478 aa6.45□□□□□ -1.38
PTPN13-201ENST00000316707 HMGXB3Q12766 1538 aa6.45□□□□□ -1.38
PTPN13-201ENST00000316707 ARID4BQ4LE39 1312 aaPredicted RBP6.44□□□□□ -1.38
PTPN13-201ENST00000316707 BICRAQ9NZM4 1560 aa6.44□□□□□ -1.38
PTPN13-201ENST00000316707 AKNAQ7Z591 1439 aa6.44□□□□□ -1.38
PTPN13-201ENST00000316707 WASHC2AQ641Q2 1341 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 IRX6P78412 446 aaPredicted RBP6.43□□□□□ -1.38
PTPN13-201ENST00000316707 CUX1P39880 1505 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 NUDCQ9Y266 331 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 EFCAB5A4FU69 1503 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 B4GALNT3Q6L9W6 998 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 FGD5Q6ZNL6 1462 aa6.43□□□□□ -1.38
PTPN13-201ENST00000316707 TCERG1O14776 1098 aaKnown RBP6.42□□□□□ -1.38
PTPN13-201ENST00000316707 FAM9BQ8IZU0 186 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 SMG6Q86US8 1419 aaKnown RBP6.42□□□□□ -1.38
PTPN13-201ENST00000316707 CCDC7Q96M83 1385 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 NCOA2Q15596 1464 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 MYOM3Q5VTT5 1437 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 NAIPQ13075 1403 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 RNF123Q5XPI4 1314 aa6.42□□□□□ -1.38
PTPN13-201ENST00000316707 MS4A1P11836 297 aa6.41□□□□□ -1.38
PTPN13-201ENST00000316707 CADPSQ9ULU8 1353 aa6.41□□□□□ -1.38
PTPN13-201ENST00000316707 ROCK2O75116 1388 aaKnown RBP6.41□□□□□ -1.38
PTPN13-201ENST00000316707 NCOA1Q15788 1441 aa6.4□□□□□ -1.39
PTPN13-201ENST00000316707 C11orf95C9JLR9 678 aaPredicted RBP6.4□□□□□ -1.39
PTPN13-201ENST00000316707 PDE3BQ13370 1112 aa6.39□□□□□ -1.39
PTPN13-201ENST00000316707 KTN1Q86UP2 1357 aaKnown RBP6.39□□□□□ -1.39
PTPN13-201ENST00000316707 L3MBTL2Q969R5 705 aa6.39□□□□□ -1.39
PTPN13-201ENST00000316707 P3H3Q8IVL6 736 aa6.39□□□□□ -1.39
PTPN13-201ENST00000316707 DDRGK1Q96HY6 314 aa6.39□□□□□ -1.39
PTPN13-201ENST00000316707 PRKCSHP14314 528 aaPredicted RBP6.39□□□□□ -1.39
PTPN13-201ENST00000316707 FHOD3Q2V2M9 1422 aa6.39□□□□□ -1.39
PTPN13-201ENST00000316707 NBR1Q14596 966 aa6.38□□□□□ -1.39
PTPN13-201ENST00000316707 MIA2Q96PC5 1412 aa6.37□□□□□ -1.39
PTPN13-201ENST00000316707 MPHOSPH9Q99550 1183 aa6.37□□□□□ -1.39
PTPN13-201ENST00000316707 PAK3O75914 559 aaPredicted RBP6.36□□□□□ -1.39
PTPN13-201ENST00000316707 KIF7Q2M1P5 1343 aa6.36□□□□□ -1.39
PTPN13-201ENST00000316707 TMC1Q8TDI8 760 aa6.36□□□□□ -1.39
PTPN13-201ENST00000316707 DAXXQ9UER7 740 aaPredicted RBP6.36□□□□□ -1.39
PTPN13-201ENST00000316707 RALBP1Q15311 655 aa6.35□□□□□ -1.39
PTPN13-201ENST00000316707 RRP7BPQ9NSQ0 103 aa6.34□□□□□ -1.39
PTPN13-201ENST00000316707 PTPRKQ15262 1439 aa6.34□□□□□ -1.39
PTPN13-201ENST00000316707 ROCK1Q13464 1354 aa6.34□□□□□ -1.39
PTPN13-201ENST00000316707 WASHC2CQ9Y4E1 1318 aa6.34□□□□□ -1.39
PTPN13-201ENST00000316707 PTPN23Q9H3S7 1636 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 PDE4AP27815 886 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 PNISRQ8TF01 805 aaKnown RBP6.33□□□□□ -1.4
PTPN13-201ENST00000316707 ANKRD30BQ9BXX2 1392 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 ABCA10Q8WWZ4 1543 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 NEFMP07197 916 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 CCDC184Q52MB2 194 aa6.33□□□□□ -1.4
PTPN13-201ENST00000316707 THOC2Q8NI27 1593 aaKnown RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms