RNA–Protein interactions for RNA: ENST00000309017.7

PTPN7-201, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPN7, Length 3,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-201ENST00000309017 SETD5Q9C0A6 1442 aa15.66■□□□□ 0.1
PTPN7-201ENST00000309017 BICRAQ9NZM4 1560 aa15.65■□□□□ 0.1
PTPN7-201ENST00000309017 IRX6P78412 446 aaPredicted RBP15.61■□□□□ 0.09
PTPN7-201ENST00000309017 ARHGAP35Q9NRY4 1499 aa15.61■□□□□ 0.09
PTPN7-201ENST00000309017 HNRNPUQ00839 825 aaKnown RBP eCLIP15.59■□□□□ 0.09
PTPN7-201ENST00000309017 CUX2O14529 1486 aa15.59■□□□□ 0.09
PTPN7-201ENST00000309017 TONSLQ96HA7 1378 aa15.58■□□□□ 0.09
PTPN7-201ENST00000309017 PPP1R15AO75807 674 aaPredicted RBP15.58■□□□□ 0.09
PTPN7-201ENST00000309017 WDR97A6NE52 1622 aa15.58■□□□□ 0.08
PTPN7-201ENST00000309017 CCER2I3L3R5 266 aa15.58■□□□□ 0.08
PTPN7-201ENST00000309017 CDK11AQ9UQ88 783 aaPredicted RBP15.57■□□□□ 0.08
PTPN7-201ENST00000309017 MAPKBP1O60336 1514 aa15.56■□□□□ 0.08
PTPN7-201ENST00000309017 PHLDB1Q86UU1 1377 aa15.54■□□□□ 0.08
PTPN7-201ENST00000309017 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
PTPN7-201ENST00000309017 BIVM-ERCC5R4GMW8 1640 aa15.52■□□□□ 0.08
PTPN7-201ENST00000309017 CUX1P39880 1505 aa15.52■□□□□ 0.07
PTPN7-201ENST00000309017 CARMIL1Q5VZK9 1371 aa15.48■□□□□ 0.07
PTPN7-201ENST00000309017 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
PTPN7-201ENST00000309017 TIAM1Q13009 1591 aa15.46■□□□□ 0.07
PTPN7-201ENST00000309017 FHAD1B1AJZ9 1412 aa15.45■□□□□ 0.06
PTPN7-201ENST00000309017 IGF1RP08069 1367 aa15.44■□□□□ 0.06
PTPN7-201ENST00000309017 MSH5O43196 834 aa15.42■□□□□ 0.06
PTPN7-201ENST00000309017 CNGB1Q14028 1251 aaPredicted RBP15.4■□□□□ 0.06
PTPN7-201ENST00000309017 FAM9BQ8IZU0 186 aa15.39■□□□□ 0.05
PTPN7-201ENST00000309017 FHOD3Q2V2M9 1422 aa15.38■□□□□ 0.05
PTPN7-201ENST00000309017 MTUS2Q5JR59 1369 aa15.37■□□□□ 0.05
PTPN7-201ENST00000309017 CHIC2Q9UKJ5 165 aa15.35■□□□□ 0.05
PTPN7-201ENST00000309017 MAP3K1Q13233 1512 aa15.34■□□□□ 0.05
PTPN7-201ENST00000309017 FANCIQ9NVI1 1328 aa15.34■□□□□ 0.05
PTPN7-201ENST00000309017 B4GALNT3Q6L9W6 998 aa15.33■□□□□ 0.05
PTPN7-201ENST00000309017 PPP4R2Q9NY27 417 aa15.33■□□□□ 0.05
PTPN7-201ENST00000309017 CFTRP13569 1480 aa15.33■□□□□ 0.04
PTPN7-201ENST00000309017 HSPA5P11021 654 aaKnown RBP15.33■□□□□ 0.04
PTPN7-201ENST00000309017 RRP7BPQ9NSQ0 103 aa15.33■□□□□ 0.04
PTPN7-201ENST00000309017 CCDC18Q5T9S5 1454 aa15.32■□□□□ 0.04
PTPN7-201ENST00000309017 MRS2Q9HD23 443 aa15.32■□□□□ 0.04
PTPN7-201ENST00000309017 EIF4G2P78344 907 aaKnown RBP eCLIP15.31■□□□□ 0.04
PTPN7-201ENST00000309017 NCAPD3P42695 1498 aa15.31■□□□□ 0.04
PTPN7-201ENST00000309017 POLR3GLQ9BT43 218 aa15.3■□□□□ 0.04
PTPN7-201ENST00000309017 PCF11O94913 1555 aaKnown RBP15.29■□□□□ 0.04
PTPN7-201ENST00000309017 FGD5Q6ZNL6 1462 aa15.28■□□□□ 0.04
PTPN7-201ENST00000309017 FGD6Q6ZV73 1430 aa15.27■□□□□ 0.04
PTPN7-201ENST00000309017 NBR1Q14596 966 aa15.27■□□□□ 0.03
PTPN7-201ENST00000309017 WASHC2AQ641Q2 1341 aa15.26■□□□□ 0.03
PTPN7-201ENST00000309017 UACAQ9BZF9 1416 aa15.26■□□□□ 0.03
PTPN7-201ENST00000309017 HMGXB3Q12766 1538 aa15.25■□□□□ 0.03
PTPN7-201ENST00000309017 CCDC184Q52MB2 194 aa15.24■□□□□ 0.03
PTPN7-201ENST00000309017 ERICH6BQ5W0A0 696 aa15.23■□□□□ 0.03
PTPN7-201ENST00000309017 ARID3CA6NKF2 412 aa15.22■□□□□ 0.03
PTPN7-201ENST00000309017 SENP3-EIF4A1A0A087X0R7 540 aa15.21■□□□□ 0.03
PTPN7-201ENST00000309017 DEKP35659 375 aaKnown RBP15.21■□□□□ 0.03
PTPN7-201ENST00000309017 MYT1LQ9UL68 1186 aa15.21■□□□□ 0.03
PTPN7-201ENST00000309017 FYCO1Q9BQS8 1478 aa15.21■□□□□ 0.03
PTPN7-201ENST00000309017 CASKIN1Q8WXD9 1431 aa15.21■□□□□ 0.03
PTPN7-201ENST00000309017 CADPSQ9ULU8 1353 aa15.21■□□□□ 0.02
PTPN7-201ENST00000309017 FOXD1Q16676 465 aa15.2■□□□□ 0.02
PTPN7-201ENST00000309017 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.2■□□□□ 0.02
PTPN7-201ENST00000309017 FMN1Q68DA7 1419 aa15.2■□□□□ 0.02
PTPN7-201ENST00000309017 HFM1A2PYH4 1435 aa15.19■□□□□ 0.02
PTPN7-201ENST00000309017 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
PTPN7-201ENST00000309017 CFAP43Q8NDM7 1665 aa15.18■□□□□ 0.02
PTPN7-201ENST00000309017 PRKRIP1Q9H875 184 aaPredicted RBP15.18■□□□□ 0.02
PTPN7-201ENST00000309017 NOP58Q9Y2X3 529 aaKnown RBP15.18■□□□□ 0.02
PTPN7-201ENST00000309017 PTPRKQ15262 1439 aa15.18■□□□□ 0.02
PTPN7-201ENST00000309017 L3MBTL2Q969R5 705 aa15.17■□□□□ 0.02
PTPN7-201ENST00000309017 CCDC136Q96JN2 1154 aa15.17■□□□□ 0.02
PTPN7-201ENST00000309017 RTL5Q5HYW3 569 aaPredicted RBP15.16■□□□□ 0.02
PTPN7-201ENST00000309017 ZNF326Q5BKZ1 582 aaKnown RBP15.16■□□□□ 0.02
PTPN7-201ENST00000309017 ANP32AP39687 249 aaKnown RBP15.16■□□□□ 0.02
PTPN7-201ENST00000309017 NAIPQ13075 1403 aa15.16■□□□□ 0.02
PTPN7-201ENST00000309017 RAD54L2Q9Y4B4 1467 aa15.15■□□□□ 0.02
PTPN7-201ENST00000309017 CNTLNQ9NXG0 1405 aa15.14■□□□□ 0.01
PTPN7-201ENST00000309017 ZBED9Q6R2W3 1325 aa15.14■□□□□ 0.01
PTPN7-201ENST00000309017 MPHOSPH9Q99550 1183 aa15.13■□□□□ 0.01
PTPN7-201ENST00000309017 AQRO60306 1485 aaKnown RBP eCLIP15.13■□□□□ 0.013e-7■■■■■ 30.8
PTPN7-201ENST00000309017 MYOM3Q5VTT5 1437 aa15.12■□□□□ 0.01
PTPN7-201ENST00000309017 PTPN23Q9H3S7 1636 aa15.12■□□□□ 0.01
PTPN7-201ENST00000309017 NCOA2Q15596 1464 aa15.12■□□□□ 0.01
PTPN7-201ENST00000309017 C11orf95C9JLR9 678 aaPredicted RBP15.11■□□□□ 0.01
PTPN7-201ENST00000309017 EFCAB5A4FU69 1503 aa15.1■□□□□ 0.01
PTPN7-201ENST00000309017 CCDC7Q96M83 1385 aa15.1■□□□□ 0.01
PTPN7-201ENST00000309017 ZBTB47Q9UFB7 747 aaPredicted RBP15.09■□□□□ 0.01
PTPN7-201ENST00000309017 NPM2Q86SE8 214 aaKnown RBP15.08■□□□□ 0.01
PTPN7-201ENST00000309017 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
PTPN7-201ENST00000309017 FANCD2Q9BXW9 1451 aa15.07■□□□□ 0
PTPN7-201ENST00000309017 SLC4A1APQ9BWU0 796 aaKnown RBP15.07■□□□□ 0
PTPN7-201ENST00000309017 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
PTPN7-201ENST00000309017 KIF7Q2M1P5 1343 aa15.04■□□□□ -0
PTPN7-201ENST00000309017 TMC1Q8TDI8 760 aa15.03■□□□□ -0
PTPN7-201ENST00000309017 NBPF8Q3BBV2 869 aa15.03■□□□□ -0
PTPN7-201ENST00000309017 AKNAQ7Z591 1439 aa15.03■□□□□ -0
PTPN7-201ENST00000309017 NUDCQ9Y266 331 aa15.02■□□□□ -0
PTPN7-201ENST00000309017 SALL2Q9Y467 1007 aaPredicted RBP15.02□□□□□ -0.01
PTPN7-201ENST00000309017 IPO9Q96P70 1041 aaKnown RBP15□□□□□ -0.01
PTPN7-201ENST00000309017 POLA1P09884 1462 aaPredicted RBP15□□□□□ -0.01
PTPN7-201ENST00000309017 NCOA1Q15788 1441 aa15□□□□□ -0.01
PTPN7-201ENST00000309017 SNAPC4Q5SXM2 1469 aa14.99□□□□□ -0.01
PTPN7-201ENST00000309017 SUPT6HQ7KZ85 1726 aaKnown RBP14.98□□□□□ -0.01
PTPN7-201ENST00000309017 ABCA10Q8WWZ4 1543 aa14.98□□□□□ -0.01
PTPN7-201ENST00000309017 KDM5BQ9UGL1 1544 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms