RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ANP32AP39687 249 aaKnown RBP8.77□□□□□ -1
VPS35-201ENST00000299138 SUPT16HQ9Y5B9 1047 aaKnown RBP8.75□□□□□ -1.01
VPS35-201ENST00000299138 SLC4A1APQ9BWU0 796 aaKnown RBP8.74□□□□□ -1.01
VPS35-201ENST00000299138 PRXQ9BXM0 1461 aa8.74□□□□□ -1.01
VPS35-201ENST00000299138 SETD5Q9C0A6 1442 aa8.72□□□□□ -1.01
VPS35-201ENST00000299138 ZBTB47Q9UFB7 747 aaPredicted RBP8.71□□□□□ -1.02
VPS35-201ENST00000299138 ATAD2BQ9ULI0 1458 aa8.7□□□□□ -1.02
VPS35-201ENST00000299138 ABCC8Q09428 1581 aa8.7□□□□□ -1.02
VPS35-201ENST00000299138 FANCIQ9NVI1 1328 aa8.69□□□□□ -1.02
VPS35-201ENST00000299138 PLPPR3Q6T4P5 718 aa8.69□□□□□ -1.02
VPS35-201ENST00000299138 TOP2BQ02880 1626 aa8.68□□□□□ -1.02
VPS35-201ENST00000299138 TONSLQ96HA7 1378 aa8.68□□□□□ -1.02
VPS35-201ENST00000299138 RTN4Q9NQC3 1192 aaKnown RBP8.68□□□□□ -1.02
VPS35-201ENST00000299138 HMGXB3Q12766 1538 aa8.67□□□□□ -1.02
VPS35-201ENST00000299138 NCAPD3P42695 1498 aa8.66□□□□□ -1.02
VPS35-201ENST00000299138 CCDC18Q5T9S5 1454 aa8.65□□□□□ -1.02
VPS35-201ENST00000299138 TSHZ2Q9NRE2 1034 aa8.65□□□□□ -1.03
VPS35-201ENST00000299138 AQRO60306 1485 aaKnown RBP eCLIP8.64□□□□□ -1.032e-7■■■■■ 29
VPS35-201ENST00000299138 FMN1Q68DA7 1419 aa8.64□□□□□ -1.03
VPS35-201ENST00000299138 ITGAEP38570 1179 aa8.64□□□□□ -1.03
VPS35-201ENST00000299138 RAPGEF2Q9Y4G8 1499 aa8.64□□□□□ -1.03
VPS35-201ENST00000299138 HSP90AA1P07900 732 aaKnown RBP8.63□□□□□ -1.03
VPS35-201ENST00000299138 EFCAB5A4FU69 1503 aa8.63□□□□□ -1.03
VPS35-201ENST00000299138 BICRAQ9NZM4 1560 aa8.62□□□□□ -1.03
VPS35-201ENST00000299138 PPP4R2Q9NY27 417 aa8.62□□□□□ -1.03
VPS35-201ENST00000299138 ARID4BQ4LE39 1312 aaPredicted RBP8.61□□□□□ -1.03
VPS35-201ENST00000299138 NAP1L5Q96NT1 182 aaPredicted RBP8.6□□□□□ -1.03
VPS35-201ENST00000299138 BIVM-ERCC5R4GMW8 1640 aa8.6□□□□□ -1.03
VPS35-201ENST00000299138 ARHGAP35Q9NRY4 1499 aa8.6□□□□□ -1.03
VPS35-201ENST00000299138 FKBP8Q14318 412 aa8.6□□□□□ -1.03
VPS35-201ENST00000299138 AKNAQ7Z591 1439 aa8.6□□□□□ -1.03
VPS35-201ENST00000299138 PPP1R15AO75807 674 aaPredicted RBP8.59□□□□□ -1.03
VPS35-201ENST00000299138 RAB3GAP2Q9H2M9 1393 aa8.59□□□□□ -1.03
VPS35-201ENST00000299138 CANXP27824 592 aaKnown RBP8.59□□□□□ -1.03
VPS35-201ENST00000299138 ZNF326Q5BKZ1 582 aaKnown RBP8.59□□□□□ -1.03
VPS35-201ENST00000299138 SYNJ1O43426 1573 aa8.58□□□□□ -1.04
VPS35-201ENST00000299138 CUX1P39880 1505 aa8.58□□□□□ -1.04
VPS35-201ENST00000299138 ARAP1Q96P48 1450 aa8.57□□□□□ -1.04
VPS35-201ENST00000299138 KTN1Q86UP2 1357 aaKnown RBP8.57□□□□□ -1.04
VPS35-201ENST00000299138 FYCO1Q9BQS8 1478 aa8.56□□□□□ -1.04
VPS35-201ENST00000299138 CFTRP13569 1480 aa8.56□□□□□ -1.04
VPS35-201ENST00000299138 CARMIL1Q5VZK9 1371 aa8.56□□□□□ -1.04
VPS35-201ENST00000299138 UACAQ9BZF9 1416 aa8.56□□□□□ -1.04
VPS35-201ENST00000299138 ROCK2O75116 1388 aaKnown RBP8.56□□□□□ -1.04
VPS35-201ENST00000299138 TRIM44Q96DX7 344 aaPredicted RBP8.56□□□□□ -1.04
VPS35-201ENST00000299138 USP35Q9P2H5 1018 aa8.56□□□□□ -1.04
VPS35-201ENST00000299138 SLC24A1O60721 1099 aa8.55□□□□□ -1.04
VPS35-201ENST00000299138 RUSC2Q8N2Y8 1516 aa8.55□□□□□ -1.04
VPS35-201ENST00000299138 EIF4G2P78344 907 aaKnown RBP eCLIP8.55□□□□□ -1.04
VPS35-201ENST00000299138 LRRC9Q6ZRR7 1453 aa8.54□□□□□ -1.04
VPS35-201ENST00000299138 TIAM1Q13009 1591 aa8.54□□□□□ -1.04
VPS35-201ENST00000299138 CASKIN1Q8WXD9 1431 aa8.54□□□□□ -1.04
VPS35-201ENST00000299138 PHF23Q9BUL5 403 aaPredicted RBP8.54□□□□□ -1.04
VPS35-201ENST00000299138 RBM19Q9Y4C8 960 aaKnown RBP8.54□□□□□ -1.04
VPS35-201ENST00000299138 MTUS2Q5JR59 1369 aa8.53□□□□□ -1.04
VPS35-201ENST00000299138 THOC2Q8NI27 1593 aaKnown RBP8.52□□□□□ -1.04
VPS35-201ENST00000299138 HFM1A2PYH4 1435 aa8.52□□□□□ -1.04
VPS35-201ENST00000299138 DNTTIP2Q5QJE6 756 aaKnown RBP8.52□□□□□ -1.05
VPS35-201ENST00000299138 PPM1GO15355 546 aaPredicted RBP8.52□□□□□ -1.05
VPS35-201ENST00000299138 FAM50AQ14320 339 aaKnown RBP8.52□□□□□ -1.05
VPS35-201ENST00000299138 UNC13AQ9UPW8 1703 aa8.51□□□□□ -1.05
VPS35-201ENST00000299138 CADPSQ9ULU8 1353 aa8.51□□□□□ -1.05
VPS35-201ENST00000299138 DDX10Q13206 875 aaKnown RBP8.51□□□□□ -1.05
VPS35-201ENST00000299138 DCAF8L1A6NGE4 600 aa8.5□□□□□ -1.05
VPS35-201ENST00000299138 ZBED9Q6R2W3 1325 aa8.49□□□□□ -1.05
VPS35-201ENST00000299138 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.49□□□□□ -1.05
VPS35-201ENST00000299138 DDRGK1Q96HY6 314 aa8.49□□□□□ -1.05
VPS35-201ENST00000299138 FGD5Q6ZNL6 1462 aa8.48□□□□□ -1.05
VPS35-201ENST00000299138 IGF1RP08069 1367 aa8.48□□□□□ -1.05
VPS35-201ENST00000299138 HNRNPUQ00839 825 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS35-201ENST00000299138 PDE3BQ13370 1112 aa8.48□□□□□ -1.05
VPS35-201ENST00000299138 MIA2Q96PC5 1412 aa8.48□□□□□ -1.05
VPS35-201ENST00000299138 FGD6Q6ZV73 1430 aa8.47□□□□□ -1.05
VPS35-201ENST00000299138 UPF2Q9HAU5 1272 aaKnown RBP8.46□□□□□ -1.05
VPS35-201ENST00000299138 CALRP27797 417 aaKnown RBP8.46□□□□□ -1.05
VPS35-201ENST00000299138 KANK4Q5T7N3 995 aaPredicted RBP8.46□□□□□ -1.05
VPS35-201ENST00000299138 PHLDB1Q86UU1 1377 aa8.46□□□□□ -1.06
VPS35-201ENST00000299138 NCLP19338 710 aaKnown RBP8.46□□□□□ -1.06
VPS35-201ENST00000299138 INSRP06213 1382 aa8.45□□□□□ -1.06
VPS35-201ENST00000299138 MYOM3Q5VTT5 1437 aa8.45□□□□□ -1.06
VPS35-201ENST00000299138 ARID3AQ99856 593 aa8.45□□□□□ -1.06
VPS35-201ENST00000299138 MS4A1P11836 297 aa8.45□□□□□ -1.06
VPS35-201ENST00000299138 TNNT3P45378 269 aaPredicted RBP8.45□□□□□ -1.06
VPS35-201ENST00000299138 PTMAP06454 111 aaKnown RBP8.44□□□□□ -1.06
VPS35-201ENST00000299138 NOP58Q9Y2X3 529 aaKnown RBP8.44□□□□□ -1.06
VPS35-201ENST00000299138 CNTLNQ9NXG0 1405 aa8.44□□□□□ -1.06
VPS35-201ENST00000299138 PDS5BQ9NTI5 1447 aa8.44□□□□□ -1.06
VPS35-201ENST00000299138 NGEFQ8N5V2 710 aa8.43□□□□□ -1.06
VPS35-201ENST00000299138 TCERG1O14776 1098 aaKnown RBP8.43□□□□□ -1.06
VPS35-201ENST00000299138 EHBP1L1Q8N3D4 1523 aa8.43□□□□□ -1.06
VPS35-201ENST00000299138 P3H3Q8IVL6 736 aa8.43□□□□□ -1.06
VPS35-201ENST00000299138 SENP3Q9H4L4 574 aaPredicted RBP8.42□□□□□ -1.06
VPS35-201ENST00000299138 MAPKBP1O60336 1514 aa8.42□□□□□ -1.06
VPS35-201ENST00000299138 ROCK1Q13464 1354 aa8.42□□□□□ -1.06
VPS35-201ENST00000299138 WASHC2AQ641Q2 1341 aa8.42□□□□□ -1.06
VPS35-201ENST00000299138 WASHC2CQ9Y4E1 1318 aa8.42□□□□□ -1.06
VPS35-201ENST00000299138 NEFMP07197 916 aa8.41□□□□□ -1.06
VPS35-201ENST00000299138 CC2D2AQ9P2K1 1620 aa8.41□□□□□ -1.06
VPS35-201ENST00000299138 MRS2Q9HD23 443 aa8.41□□□□□ -1.06
VPS35-201ENST00000299138 FBLN2P98095 1184 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms