RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NISCHQ9Y2I1 1504 aa11.86□□□□□ -0.51
VPS35-201ENST00000299138 PELP1Q8IZL8 1130 aaKnown RBP10.45□□□□□ -0.74
VPS35-201ENST00000299138 MYT1Q01538 1121 aa10.29□□□□□ -0.76
VPS35-201ENST00000299138 DCAF8L2P0C7V8 631 aa10.25□□□□□ -0.77
VPS35-201ENST00000299138 ERICH6Q7L0X2 663 aa10.25□□□□□ -0.77
VPS35-201ENST00000299138 ZEB1P37275 1124 aaPredicted RBP10.2□□□□□ -0.78
VPS35-201ENST00000299138 HRCP23327 699 aa10.15□□□□□ -0.78
VPS35-201ENST00000299138 ZCCHC6Q5VYS8 1495 aaKnown RBP10.09□□□□□ -0.79
VPS35-201ENST00000299138 CCDC180Q9P1Z9 1646 aa10.09□□□□□ -0.79
VPS35-201ENST00000299138 DCAF1Q9Y4B6 1507 aa10.04□□□□□ -0.8
VPS35-201ENST00000299138 SUPT5HO00267 1087 aaKnown RBP10.01□□□□□ -0.81
VPS35-201ENST00000299138 SHROOM4Q9ULL8 1493 aa9.97□□□□□ -0.81
VPS35-201ENST00000299138 CCER1Q8TC90 406 aaPredicted RBP9.95□□□□□ -0.82
VPS35-201ENST00000299138 CHIC1Q5VXU3 224 aa9.95□□□□□ -0.82
VPS35-201ENST00000299138 TRIM26Q12899 539 aaPredicted RBP9.88□□□□□ -0.83
VPS35-201ENST00000299138 TTBK1Q5TCY1 1321 aaPredicted RBP9.83□□□□□ -0.84
VPS35-201ENST00000299138 PCGF6Q9BYE7 350 aa9.77□□□□□ -0.85
VPS35-201ENST00000299138 MYO15BQ96JP2 1530 aa9.77□□□□□ -0.85
VPS35-201ENST00000299138 EHMT2Q96KQ7 1210 aa9.76□□□□□ -0.85
VPS35-201ENST00000299138 CENPBP07199 599 aaPredicted RBP9.73□□□□□ -0.85
VPS35-201ENST00000299138 CLSPNQ9HAW4 1339 aa9.64□□□□□ -0.87
VPS35-201ENST00000299138 YTHDC1Q96MU7 727 aaKnown RBP9.61□□□□□ -0.87
VPS35-201ENST00000299138 TRIM41Q8WV44 630 aa9.58□□□□□ -0.88
VPS35-201ENST00000299138 ABCC9O60706 1549 aa9.55□□□□□ -0.88
VPS35-201ENST00000299138 NEFLP07196 543 aa9.54□□□□□ -0.88
VPS35-201ENST00000299138 EEA1Q15075 1411 aa9.52□□□□□ -0.89
VPS35-201ENST00000299138 DAXXQ9UER7 740 aaPredicted RBP9.51□□□□□ -0.89
VPS35-201ENST00000299138 AEBP2Q6ZN18 517 aaPredicted RBP9.48□□□□□ -0.89
VPS35-201ENST00000299138 RB1CC1Q8TDY2 1594 aa9.45□□□□□ -0.9
VPS35-201ENST00000299138 RSF1Q96T23 1441 aaPredicted RBP9.42□□□□□ -0.9
VPS35-201ENST00000299138 RANGAP1P46060 587 aaPredicted RBP9.4□□□□□ -0.91
VPS35-201ENST00000299138 RTL5Q5HYW3 569 aaPredicted RBP9.39□□□□□ -0.91
VPS35-201ENST00000299138 NACADO15069 1562 aa9.38□□□□□ -0.91
VPS35-201ENST00000299138 ACIN1Q9UKV3 1341 aaKnown RBP9.38□□□□□ -0.91
VPS35-201ENST00000299138 WRNQ14191 1432 aaPredicted RBP eCLIP9.37□□□□□ -0.91
VPS35-201ENST00000299138 EIF5BO60841 1220 aaKnown RBP9.34□□□□□ -0.91
VPS35-201ENST00000299138 APLP2Q06481 763 aa9.32□□□□□ -0.92
VPS35-201ENST00000299138 LOC105371045A0A1W2PR82 267 aa9.32□□□□□ -0.92
VPS35-201ENST00000299138 PPARGC1BQ86YN6 1023 aaKnown RBP9.31□□□□□ -0.92
VPS35-201ENST00000299138 SCRIBQ14160 1630 aa9.28□□□□□ -0.92
VPS35-201ENST00000299138 TNIKQ9UKE5 1360 aa9.28□□□□□ -0.92
VPS35-201ENST00000299138 DIEXFQ68CQ4 756 aaKnown RBP9.28□□□□□ -0.92
VPS35-201ENST00000299138 ZNF316A6NFI3 1004 aaPredicted RBP9.27□□□□□ -0.93
VPS35-201ENST00000299138 BAZ1AQ9NRL2 1556 aaPredicted RBP9.25□□□□□ -0.93
VPS35-201ENST00000299138 GLIPR1L2Q4G1C9 344 aa9.19□□□□□ -0.94
VPS35-201ENST00000299138 PABPN1Q86U42 306 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS35-201ENST00000299138 SCAF1Q9H7N4 1312 aaKnown RBP9.18□□□□□ -0.94
VPS35-201ENST00000299138 GOLGA3Q08378 1498 aa9.17□□□□□ -0.94
VPS35-201ENST00000299138 MYT1LQ9UL68 1186 aa9.17□□□□□ -0.94
VPS35-201ENST00000299138 CSRNP3Q8WYN3 585 aa9.16□□□□□ -0.94
VPS35-201ENST00000299138 FAM9AQ8IZU1 332 aaPredicted RBP9.14□□□□□ -0.95
VPS35-201ENST00000299138 CEP164Q9UPV0 1460 aa9.13□□□□□ -0.95
VPS35-201ENST00000299138 CEP162Q5TB80 1403 aa9.12□□□□□ -0.95
VPS35-201ENST00000299138 GTF3C3Q9Y5Q9 886 aa9.12□□□□□ -0.95
VPS35-201ENST00000299138 TIMELESSQ9UNS1 1208 aa9.11□□□□□ -0.95
VPS35-201ENST00000299138 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
VPS35-201ENST00000299138 TOP2AP11388 1531 aaKnown RBP9.09□□□□□ -0.95
VPS35-201ENST00000299138 UBTFP17480 764 aaKnown RBP9.09□□□□□ -0.95
VPS35-201ENST00000299138 NEUROD1Q13562 356 aa9.06□□□□□ -0.96
VPS35-201ENST00000299138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.04□□□□□ -0.96
VPS35-201ENST00000299138 VPS8Q8N3P4 1428 aa9.03□□□□□ -0.96
VPS35-201ENST00000299138 CLIP1P30622 1438 aa9.01□□□□□ -0.97
VPS35-201ENST00000299138 CNGB1Q14028 1251 aaPredicted RBP9.01□□□□□ -0.97
VPS35-201ENST00000299138 MROH2BQ7Z745 1585 aa9.01□□□□□ -0.97
VPS35-201ENST00000299138 BCANQ96GW7 911 aa8.99□□□□□ -0.97
VPS35-201ENST00000299138 ERICH6BQ5W0A0 696 aa8.97□□□□□ -0.97
VPS35-201ENST00000299138 POLR3GLQ9BT43 218 aa8.97□□□□□ -0.97
VPS35-201ENST00000299138 CECR2Q9BXF3 1484 aa8.96□□□□□ -0.98
VPS35-201ENST00000299138 KIF21BO75037 1637 aa8.95□□□□□ -0.98
VPS35-201ENST00000299138 EIF4G1Q04637 1599 aaKnown RBP8.9□□□□□ -0.98
VPS35-201ENST00000299138 ERICH3Q5RHP9 1530 aa8.9□□□□□ -0.98
VPS35-201ENST00000299138 AMER1Q5JTC6 1135 aaPredicted RBP8.9□□□□□ -0.98
VPS35-201ENST00000299138 ATP1B4Q9UN42 357 aaPredicted RBP8.9□□□□□ -0.98
VPS35-201ENST00000299138 CCDC88BA6NC98 1476 aa8.9□□□□□ -0.99
VPS35-201ENST00000299138 SMARCA4P51532 1647 aa8.89□□□□□ -0.99
VPS35-201ENST00000299138 CCER2I3L3R5 266 aa8.88□□□□□ -0.99
VPS35-201ENST00000299138 SMARCA2P51531 1590 aa8.88□□□□□ -0.99
VPS35-201ENST00000299138 CDK11AQ9UQ88 783 aaPredicted RBP8.87□□□□□ -0.99
VPS35-201ENST00000299138 PEG3Q9GZU2 1588 aa8.87□□□□□ -0.99
VPS35-201ENST00000299138 ANP32EQ9BTT0 268 aa8.86□□□□□ -0.99
VPS35-201ENST00000299138 MAP3K1Q13233 1512 aa8.85□□□□□ -0.99
VPS35-201ENST00000299138 CUX2O14529 1486 aa8.84□□□□□ -0.99
VPS35-201ENST00000299138 KIF27Q86VH2 1401 aa8.84□□□□□ -0.99
VPS35-201ENST00000299138 BCL11AQ9H165 835 aa8.84□□□□□ -1
VPS35-201ENST00000299138 ANP32BQ92688 251 aaKnown RBP8.83□□□□□ -1
VPS35-201ENST00000299138 FHAD1B1AJZ9 1412 aa8.83□□□□□ -1
VPS35-201ENST00000299138 HNRNPUL2Q1KMD3 747 aaKnown RBP8.82□□□□□ -1
VPS35-201ENST00000299138 MIER1Q8N108 512 aa8.81□□□□□ -1
VPS35-201ENST00000299138 ARXQ96QS3 562 aa8.81□□□□□ -1
VPS35-201ENST00000299138 NPM2Q86SE8 214 aaKnown RBP8.81□□□□□ -1
VPS35-201ENST00000299138 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.81□□□□□ -1
VPS35-201ENST00000299138 RRBP1Q9P2E9 1410 aaKnown RBP8.81□□□□□ -1
VPS35-201ENST00000299138 WIZO95785 1651 aa8.8□□□□□ -1
VPS35-201ENST00000299138 SOGA1O94964 1423 aa8.8□□□□□ -1
VPS35-201ENST00000299138 ANP32CO43423 234 aa8.79□□□□□ -1
VPS35-201ENST00000299138 CCNB3Q8WWL7 1395 aa8.79□□□□□ -1
VPS35-201ENST00000299138 NBR1Q14596 966 aa8.79□□□□□ -1
VPS35-201ENST00000299138 TNNT2P45379 298 aaPredicted RBP8.78□□□□□ -1
VPS35-201ENST00000299138 CDK11BP21127 795 aaKnown RBP8.78□□□□□ -1
VPS35-201ENST00000299138 DHX57Q6P158 1386 aaKnown RBP8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms