RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TDRD9Q8NDG6 1382 aaKnown RBP29.86■■■□□ 2.37
VPS53-201ENST00000291074 MAP3K1Q13233 1512 aa29.86■■■□□ 2.37
VPS53-201ENST00000291074 FHOD3Q2V2M9 1422 aa29.86■■■□□ 2.37
VPS53-201ENST00000291074 ZNF316A6NFI3 1004 aaPredicted RBP29.85■■■□□ 2.37
VPS53-201ENST00000291074 ABCA5Q8WWZ7 1642 aa29.84■■■□□ 2.37
VPS53-201ENST00000291074 FHAD1B1AJZ9 1412 aa29.83■■■□□ 2.37
VPS53-201ENST00000291074 DHX57Q6P158 1386 aaKnown RBP29.82■■■□□ 2.36
VPS53-201ENST00000291074 LRRC9Q6ZRR7 1453 aa29.82■■■□□ 2.36
VPS53-201ENST00000291074 ITGAEP38570 1179 aa29.8■■■□□ 2.36
VPS53-201ENST00000291074 CFAP43Q8NDM7 1665 aa29.8■■■□□ 2.36
VPS53-201ENST00000291074 ATP1B4Q9UN42 357 aaPredicted RBP29.78■■■□□ 2.36
VPS53-201ENST00000291074 EFCAB5A4FU69 1503 aa29.77■■■□□ 2.36
VPS53-201ENST00000291074 GAPVD1Q14C86 1478 aa29.77■■■□□ 2.36
VPS53-201ENST00000291074 PHLDB1Q86UU1 1377 aa29.71■■■□□ 2.35
VPS53-201ENST00000291074 FYCO1Q9BQS8 1478 aa29.68■■■□□ 2.34
VPS53-201ENST00000291074 TARBP1Q13395 1621 aaKnown RBP29.68■■■□□ 2.34
VPS53-201ENST00000291074 CLSPNQ9HAW4 1339 aa29.66■■■□□ 2.34
VPS53-201ENST00000291074 CASKIN1Q8WXD9 1431 aa29.65■■■□□ 2.34
VPS53-201ENST00000291074 AQRO60306 1485 aaKnown RBP eCLIP29.61■■■□□ 2.337e-8■■■■■ 27.9
VPS53-201ENST00000291074 SAMD9Q5K651 1589 aa29.58■■■□□ 2.33
VPS53-201ENST00000291074 SCAF1Q9H7N4 1312 aaKnown RBP29.57■■■□□ 2.32
VPS53-201ENST00000291074 RAB3GAP2Q9H2M9 1393 aa29.57■■■□□ 2.32
VPS53-201ENST00000291074 FAM50AQ14320 339 aaKnown RBP29.57■■■□□ 2.32
VPS53-201ENST00000291074 SNAPC4Q5SXM2 1469 aa29.56■■■□□ 2.32
VPS53-201ENST00000291074 FMN1Q68DA7 1419 aa29.56■■■□□ 2.32
VPS53-201ENST00000291074 PBRM1Q86U86 1689 aa29.54■■■□□ 2.32
VPS53-201ENST00000291074 LRRIQ1Q96JM4 1722 aa29.5■■■□□ 2.31
VPS53-201ENST00000291074 MRC2Q9UBG0 1479 aa29.49■■■□□ 2.31
VPS53-201ENST00000291074 SETD5Q9C0A6 1442 aa29.45■■■□□ 2.31
VPS53-201ENST00000291074 NEUROD1Q13562 356 aa29.45■■■□□ 2.31
VPS53-201ENST00000291074 ACIN1Q9UKV3 1341 aaKnown RBP29.43■■■□□ 2.3
VPS53-201ENST00000291074 MAPKBP1O60336 1514 aa29.42■■■□□ 2.3
VPS53-201ENST00000291074 GRIN2BQ13224 1484 aa29.4■■■□□ 2.3
VPS53-201ENST00000291074 ADAMTS12P58397 1594 aa29.39■■■□□ 2.3
VPS53-201ENST00000291074 MIER1Q8N108 512 aa29.39■■■□□ 2.3
VPS53-201ENST00000291074 MTUS2Q5JR59 1369 aa29.38■■■□□ 2.29
VPS53-201ENST00000291074 FGD6Q6ZV73 1430 aa29.34■■■□□ 2.29
VPS53-201ENST00000291074 ZNF608Q9ULD9 1512 aaPredicted RBP29.33■■■□□ 2.29
VPS53-201ENST00000291074 IQGAP2Q13576 1575 aa29.31■■■□□ 2.28
VPS53-201ENST00000291074 CENPBP07199 599 aaPredicted RBP29.3■■■□□ 2.28
VPS53-201ENST00000291074 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
VPS53-201ENST00000291074 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.28■■■□□ 2.28
VPS53-201ENST00000291074 WDR62O43379 1518 aa29.27■■■□□ 2.28
VPS53-201ENST00000291074 NCOA2Q15596 1464 aa29.26■■■□□ 2.27
VPS53-201ENST00000291074 IFT140Q96RY7 1462 aa29.25■■■□□ 2.27
VPS53-201ENST00000291074 YTHDC1Q96MU7 727 aaKnown RBP29.25■■■□□ 2.27
VPS53-201ENST00000291074 SUPT6HQ7KZ85 1726 aaKnown RBP29.23■■■□□ 2.27
VPS53-201ENST00000291074 MAGI3Q5TCQ9 1506 aa29.23■■■□□ 2.27
VPS53-201ENST00000291074 EHBP1L1Q8N3D4 1523 aa29.22■■■□□ 2.27
VPS53-201ENST00000291074 PELP1Q8IZL8 1130 aaKnown RBP29.19■■■□□ 2.26
VPS53-201ENST00000291074 MYOM3Q5VTT5 1437 aa29.18■■■□□ 2.26
VPS53-201ENST00000291074 SIN3AQ96ST3 1273 aa29.18■■■□□ 2.26
VPS53-201ENST00000291074 PTPRKQ15262 1439 aa29.18■■■□□ 2.26
VPS53-201ENST00000291074 HECW1Q76N89 1606 aa29.17■■■□□ 2.26
VPS53-201ENST00000291074 CCDC18Q5T9S5 1454 aa29.15■■■□□ 2.26
VPS53-201ENST00000291074 EIF4G3O43432 1585 aaKnown RBP29.14■■■□□ 2.25
VPS53-201ENST00000291074 UGGT2Q9NYU1 1516 aa29.13■■■□□ 2.25
VPS53-201ENST00000291074 CDK13Q14004 1512 aaKnown RBP29.11■■■□□ 2.25
VPS53-201ENST00000291074 ERCC6Q03468 1493 aa29.1■■■□□ 2.25
VPS53-201ENST00000291074 ARID3CA6NKF2 412 aa29.1■■■□□ 2.25
VPS53-201ENST00000291074 ARHGEF11O15085 1522 aa29.1■■■□□ 2.25
VPS53-201ENST00000291074 EPRSP07814 1512 aaKnown RBP29.1■■■□□ 2.25
VPS53-201ENST00000291074 PTPN23Q9H3S7 1636 aa29.1■■■□□ 2.25
VPS53-201ENST00000291074 GTF3C3Q9Y5Q9 886 aa29.08■■■□□ 2.25
VPS53-201ENST00000291074 HFM1A2PYH4 1435 aa29.05■■■□□ 2.24
VPS53-201ENST00000291074 GRIN2AQ12879 1464 aa29.03■■■□□ 2.24
VPS53-201ENST00000291074 KIAA0586Q9BVV6 1533 aa29.02■■■□□ 2.24
VPS53-201ENST00000291074 KIAA0556O60303 1618 aa29.01■■■□□ 2.24
VPS53-201ENST00000291074 DISP1Q96F81 1524 aa29.01■■■□□ 2.23
VPS53-201ENST00000291074 NAIPQ13075 1403 aa29■■■□□ 2.23
VPS53-201ENST00000291074 UACAQ9BZF9 1416 aa28.94■■■□□ 2.22
VPS53-201ENST00000291074 TCOF1Q13428 1488 aaKnown RBP28.93■■■□□ 2.22
VPS53-201ENST00000291074 CHIC2Q9UKJ5 165 aa28.9■■■□□ 2.22
VPS53-201ENST00000291074 RRP7BPQ9NSQ0 103 aa28.89■■■□□ 2.22
VPS53-201ENST00000291074 MAGI1Q96QZ7 1491 aaPredicted RBP28.88■■■□□ 2.21
VPS53-201ENST00000291074 CEP170Q5SW79 1584 aa28.88■■■□□ 2.21
VPS53-201ENST00000291074 NUP153P49790 1475 aaKnown RBP28.87■■■□□ 2.21
VPS53-201ENST00000291074 RAPGEF6Q8TEU7 1601 aa28.86■■■□□ 2.21
VPS53-201ENST00000291074 TIMELESSQ9UNS1 1208 aa28.86■■■□□ 2.21
VPS53-201ENST00000291074 CHMP7Q8WUX9 453 aaPredicted RBP28.85■■■□□ 2.21
VPS53-201ENST00000291074 GCC2Q8IWJ2 1684 aa28.84■■■□□ 2.21
VPS53-201ENST00000291074 FBLN2P98095 1184 aa28.84■■■□□ 2.21
VPS53-201ENST00000291074 SYNJ2O15056 1496 aa28.83■■■□□ 2.21
VPS53-201ENST00000291074 PPP1R15AO75807 674 aaPredicted RBP28.83■■■□□ 2.21
VPS53-201ENST00000291074 MIA2Q96PC5 1412 aa28.82■■■□□ 2.2
VPS53-201ENST00000291074 KDM6BO15054 1643 aa28.81■■■□□ 2.2
VPS53-201ENST00000291074 TONSLQ96HA7 1378 aa28.79■■■□□ 2.2
VPS53-201ENST00000291074 HIRIP3Q9BW71 556 aaPredicted RBP28.76■■■□□ 2.19
VPS53-201ENST00000291074 PLB1Q6P1J6 1458 aa28.73■■■□□ 2.19
VPS53-201ENST00000291074 AKNAQ7Z591 1439 aa28.72■■■□□ 2.19
VPS53-201ENST00000291074 DENND4BO75064 1496 aaPredicted RBP28.7■■■□□ 2.18
VPS53-201ENST00000291074 ZNF644Q9H582 1327 aaPredicted RBP28.69■■■□□ 2.18
VPS53-201ENST00000291074 DDX10Q13206 875 aaKnown RBP28.69■■■□□ 2.18
VPS53-201ENST00000291074 TRIM52Q96A61 297 aa28.69■■■□□ 2.18
VPS53-201ENST00000291074 NUP160Q12769 1436 aa28.68■■■□□ 2.18
VPS53-201ENST00000291074 PRG4Q92954 1404 aaPredicted RBP28.68■■■□□ 2.18
VPS53-201ENST00000291074 DAPK1P53355 1430 aa28.66■■■□□ 2.18
VPS53-201ENST00000291074 CDK11AQ9UQ88 783 aaPredicted RBP28.65■■■□□ 2.18
VPS53-201ENST00000291074 DNMT1P26358 1616 aaKnown RBP28.65■■■□□ 2.18
VPS53-201ENST00000291074 JPH4Q96JJ6 628 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms