RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FANCD2Q9BXW9 1451 aa24.22■■□□□ 1.47
VPS54-201ENST00000272322 FHOD3Q2V2M9 1422 aa24.19■■□□□ 1.46
VPS54-201ENST00000272322 RAB3GAP2Q9H2M9 1393 aa24.15■■□□□ 1.46
VPS54-201ENST00000272322 PHLDB1Q86UU1 1377 aa24.13■■□□□ 1.45
VPS54-201ENST00000272322 KCNH8Q96L42 1107 aa24.08■■□□□ 1.45
VPS54-201ENST00000272322 RRBP1Q9P2E9 1410 aaKnown RBP24.05■■□□□ 1.44
VPS54-201ENST00000272322 DDX10Q13206 875 aaKnown RBP24.03■■□□□ 1.44
VPS54-201ENST00000272322 CHIC2Q9UKJ5 165 aa24.03■■□□□ 1.44
VPS54-201ENST00000272322 POLA1P09884 1462 aaPredicted RBP24.01■■□□□ 1.43
VPS54-201ENST00000272322 TOPBP1Q92547 1522 aa23.95■■□□□ 1.42
VPS54-201ENST00000272322 LRRC9Q6ZRR7 1453 aa23.95■■□□□ 1.42
VPS54-201ENST00000272322 CLSPNQ9HAW4 1339 aa23.93■■□□□ 1.42
VPS54-201ENST00000272322 MTUS2Q5JR59 1369 aa23.92■■□□□ 1.42
VPS54-201ENST00000272322 SETD5Q9C0A6 1442 aa23.91■■□□□ 1.42
VPS54-201ENST00000272322 RRP7BPQ9NSQ0 103 aa23.91■■□□□ 1.42
VPS54-201ENST00000272322 FHAD1B1AJZ9 1412 aa23.89■■□□□ 1.41
VPS54-201ENST00000272322 TIAM1Q13009 1591 aa23.88■■□□□ 1.41
VPS54-201ENST00000272322 TRIM52Q96A61 297 aa23.83■■□□□ 1.41
VPS54-201ENST00000272322 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
VPS54-201ENST00000272322 FBLN2P98095 1184 aa23.82■■□□□ 1.4
VPS54-201ENST00000272322 URB2Q14146 1524 aaKnown RBP23.81■■□□□ 1.4
VPS54-201ENST00000272322 PELP1Q8IZL8 1130 aaKnown RBP23.79■■□□□ 1.4
VPS54-201ENST00000272322 BCANQ96GW7 911 aa23.79■■□□□ 1.4
VPS54-201ENST00000272322 ABCA10Q8WWZ4 1543 aa23.77■■□□□ 1.4
VPS54-201ENST00000272322 DNMBPQ6XZF7 1577 aa23.77■■□□□ 1.4
VPS54-201ENST00000272322 FOXD1Q16676 465 aa23.76■■□□□ 1.39
VPS54-201ENST00000272322 CNGB1Q14028 1251 aaPredicted RBP23.75■■□□□ 1.39
VPS54-201ENST00000272322 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.391e-7■■■■□ 25.8
VPS54-201ENST00000272322 GAPVD1Q14C86 1478 aa23.73■■□□□ 1.39
VPS54-201ENST00000272322 MAPKBP1O60336 1514 aa23.72■■□□□ 1.39
VPS54-201ENST00000272322 PDS5BQ9NTI5 1447 aa23.68■■□□□ 1.38
VPS54-201ENST00000272322 TONSLQ96HA7 1378 aa23.67■■□□□ 1.38
VPS54-201ENST00000272322 PRDM2Q13029 1718 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 CASKIN1Q8WXD9 1431 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 PPP1R15AO75807 674 aaPredicted RBP23.66■■□□□ 1.38
VPS54-201ENST00000272322 FMN1Q68DA7 1419 aa23.65■■□□□ 1.38
VPS54-201ENST00000272322 PTPRKQ15262 1439 aa23.65■■□□□ 1.38
VPS54-201ENST00000272322 FGD6Q6ZV73 1430 aa23.63■■□□□ 1.37
VPS54-201ENST00000272322 ZNF777Q9ULD5 760 aaPredicted RBP23.61■■□□□ 1.37
VPS54-201ENST00000272322 SUPT16HQ9Y5B9 1047 aaKnown RBP23.58■■□□□ 1.37
VPS54-201ENST00000272322 FYCO1Q9BQS8 1478 aa23.58■■□□□ 1.36
VPS54-201ENST00000272322 ZNF644Q9H582 1327 aaPredicted RBP23.56■■□□□ 1.36
VPS54-201ENST00000272322 NCOA2Q15596 1464 aa23.54■■□□□ 1.36
VPS54-201ENST00000272322 ANP32CO43423 234 aa23.53■■□□□ 1.36
VPS54-201ENST00000272322 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
VPS54-201ENST00000272322 CCDC18Q5T9S5 1454 aa23.51■■□□□ 1.35
VPS54-201ENST00000272322 POLR3GLQ9BT43 218 aa23.51■■□□□ 1.35
VPS54-201ENST00000272322 ZNF326Q5BKZ1 582 aaKnown RBP23.49■■□□□ 1.35
VPS54-201ENST00000272322 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
VPS54-201ENST00000272322 FKBP8Q14318 412 aa23.46■■□□□ 1.35
VPS54-201ENST00000272322 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
VPS54-201ENST00000272322 EFCAB5A4FU69 1503 aa23.45■■□□□ 1.35
VPS54-201ENST00000272322 SENP3-EIF4A1A0A087X0R7 540 aa23.45■■□□□ 1.34
VPS54-201ENST00000272322 CHMP7Q8WUX9 453 aaPredicted RBP23.45■■□□□ 1.34
VPS54-201ENST00000272322 ZNF608Q9ULD9 1512 aaPredicted RBP23.45■■□□□ 1.34
VPS54-201ENST00000272322 MYOM3Q5VTT5 1437 aa23.44■■□□□ 1.34
VPS54-201ENST00000272322 CDK13Q14004 1512 aaKnown RBP23.43■■□□□ 1.34
VPS54-201ENST00000272322 KIF21AQ7Z4S6 1674 aa23.43■■□□□ 1.34
VPS54-201ENST00000272322 CUL7Q14999 1698 aa23.42■■□□□ 1.34
VPS54-201ENST00000272322 NAIPQ13075 1403 aa23.41■■□□□ 1.34
VPS54-201ENST00000272322 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
VPS54-201ENST00000272322 MPHOSPH9Q99550 1183 aa23.39■■□□□ 1.33
VPS54-201ENST00000272322 CTTNBP2Q8WZ74 1663 aa23.37■■□□□ 1.33
VPS54-201ENST00000272322 IRX6P78412 446 aaPredicted RBP23.37■■□□□ 1.33
VPS54-201ENST00000272322 L3MBTL2Q969R5 705 aa23.37■■□□□ 1.33
VPS54-201ENST00000272322 HSPA5P11021 654 aaKnown RBP23.36■■□□□ 1.33
VPS54-201ENST00000272322 MAGI3Q5TCQ9 1506 aa23.36■■□□□ 1.33
VPS54-201ENST00000272322 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
VPS54-201ENST00000272322 GRIN2BQ13224 1484 aa23.35■■□□□ 1.33
VPS54-201ENST00000272322 HFM1A2PYH4 1435 aa23.34■■□□□ 1.33
VPS54-201ENST00000272322 UACAQ9BZF9 1416 aa23.33■■□□□ 1.33
VPS54-201ENST00000272322 ABCA5Q8WWZ7 1642 aa23.32■■□□□ 1.32
VPS54-201ENST00000272322 TIMELESSQ9UNS1 1208 aa23.31■■□□□ 1.32
VPS54-201ENST00000272322 HNRNPUQ00839 825 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS54-201ENST00000272322 CFDP1Q9UEE9 299 aaPredicted RBP23.29■■□□□ 1.32
VPS54-201ENST00000272322 EPRSP07814 1512 aaKnown RBP23.26■■□□□ 1.31
VPS54-201ENST00000272322 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
VPS54-201ENST00000272322 FAM9BQ8IZU0 186 aa23.25■■□□□ 1.31
VPS54-201ENST00000272322 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
VPS54-201ENST00000272322 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS54-201ENST00000272322 NEFLP07196 543 aa23.24■■□□□ 1.31
VPS54-201ENST00000272322 C11orf95C9JLR9 678 aaPredicted RBP23.24■■□□□ 1.31
VPS54-201ENST00000272322 CDK11AQ9UQ88 783 aaPredicted RBP23.24■■□□□ 1.31
VPS54-201ENST00000272322 PTPN23Q9H3S7 1636 aa23.24■■□□□ 1.31
VPS54-201ENST00000272322 EIF4G2P78344 907 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS54-201ENST00000272322 CCDC184Q52MB2 194 aa23.23■■□□□ 1.31
VPS54-201ENST00000272322 WASHC2AQ641Q2 1341 aa23.22■■□□□ 1.31
VPS54-201ENST00000272322 SAMD9Q5K651 1589 aa23.22■■□□□ 1.31
VPS54-201ENST00000272322 TARBP1Q13395 1621 aaKnown RBP23.21■■□□□ 1.31
VPS54-201ENST00000272322 THOC2Q8NI27 1593 aaKnown RBP23.21■■□□□ 1.31
VPS54-201ENST00000272322 NBPF8Q3BBV2 869 aa23.21■■□□□ 1.31
VPS54-201ENST00000272322 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.31
VPS54-201ENST00000272322 PRG4Q92954 1404 aaPredicted RBP23.2■■□□□ 1.3
VPS54-201ENST00000272322 IQGAP2Q13576 1575 aa23.19■■□□□ 1.3
VPS54-201ENST00000272322 JPH4Q96JJ6 628 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 SUPT6HQ7KZ85 1726 aaKnown RBP23.18■■□□□ 1.3
VPS54-201ENST00000272322 KDM2AQ9Y2K7 1162 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 EHBP1L1Q8N3D4 1523 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 KDM6BO15054 1643 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms