RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KIF21BO75037 1637 aa19.21■□□□□ 0.67
LDLR-201ENST00000252444 TDRD9Q8NDG6 1382 aaKnown RBP19.21■□□□□ 0.66
LDLR-201ENST00000252444 CCNB3Q8WWL7 1395 aa19.2■□□□□ 0.66
LDLR-201ENST00000252444 TONSLQ96HA7 1378 aa19.17■□□□□ 0.66
LDLR-201ENST00000252444 CLSPNQ9HAW4 1339 aa19.16■□□□□ 0.66
LDLR-201ENST00000252444 ARHGAP35Q9NRY4 1499 aa19.16■□□□□ 0.66
LDLR-201ENST00000252444 CFDP1Q9UEE9 299 aaPredicted RBP19.14■□□□□ 0.65
LDLR-201ENST00000252444 ARID3CA6NKF2 412 aa19.14■□□□□ 0.65
LDLR-201ENST00000252444 CCDC18Q5T9S5 1454 aa19.13■□□□□ 0.65
LDLR-201ENST00000252444 TOPBP1Q92547 1522 aa19.12■□□□□ 0.65
LDLR-201ENST00000252444 EFCAB5A4FU69 1503 aa19.1■□□□□ 0.65
LDLR-201ENST00000252444 RSPH4AQ5TD94 716 aa19.09■□□□□ 0.65
LDLR-201ENST00000252444 NEUROD1Q13562 356 aa19.07■□□□□ 0.64
LDLR-201ENST00000252444 CUL7Q14999 1698 aa19.06■□□□□ 0.64
LDLR-201ENST00000252444 IGF1RP08069 1367 aa19.03■□□□□ 0.64
LDLR-201ENST00000252444 KANK1Q14678 1352 aa19.02■□□□□ 0.64
LDLR-201ENST00000252444 POLR3GLQ9BT43 218 aa19.02■□□□□ 0.64
LDLR-201ENST00000252444 ABCA10Q8WWZ4 1543 aa19.01■□□□□ 0.63
LDLR-201ENST00000252444 SYNJ1O43426 1573 aa19■□□□□ 0.63
LDLR-201ENST00000252444 STAG3Q9UJ98 1225 aa18.99■□□□□ 0.63
LDLR-201ENST00000252444 CUX1P39880 1505 aa18.99■□□□□ 0.63
LDLR-201ENST00000252444 TIMELESSQ9UNS1 1208 aa18.98■□□□□ 0.63
LDLR-201ENST00000252444 BIVM-ERCC5R4GMW8 1640 aa18.98■□□□□ 0.63
LDLR-201ENST00000252444 ANP32CO43423 234 aa18.98■□□□□ 0.63
LDLR-201ENST00000252444 ZNF316A6NFI3 1004 aaPredicted RBP18.98■□□□□ 0.63
LDLR-201ENST00000252444 SLC24A1O60721 1099 aa18.98■□□□□ 0.63
LDLR-201ENST00000252444 POLA1P09884 1462 aaPredicted RBP18.96■□□□□ 0.63
LDLR-201ENST00000252444 JPH4Q96JJ6 628 aa18.95■□□□□ 0.62
LDLR-201ENST00000252444 RAD54L2Q9Y4B4 1467 aa18.94■□□□□ 0.62
LDLR-201ENST00000252444 KCNH8Q96L42 1107 aa18.93■□□□□ 0.62
LDLR-201ENST00000252444 EFCAB2Q5VUJ9 269 aa18.92■□□□□ 0.62
LDLR-201ENST00000252444 OSCARQ8IYS5 282 aa18.92■□□□□ 0.62
LDLR-201ENST00000252444 PTPRGP23470 1445 aa18.92■□□□□ 0.62
LDLR-201ENST00000252444 DIEXFQ68CQ4 756 aaKnown RBP18.92■□□□□ 0.62
LDLR-201ENST00000252444 MAGI1Q96QZ7 1491 aaPredicted RBP18.9■□□□□ 0.62
LDLR-201ENST00000252444 SLC4A1APQ9BWU0 796 aaKnown RBP18.89■□□□□ 0.62
LDLR-201ENST00000252444 WDR97A6NE52 1622 aa18.88■□□□□ 0.61
LDLR-201ENST00000252444 NESP48681 1621 aa18.88■□□□□ 0.61
LDLR-201ENST00000252444 BCANQ96GW7 911 aa18.87■□□□□ 0.61
LDLR-201ENST00000252444 ZNF326Q5BKZ1 582 aaKnown RBP18.87■□□□□ 0.61
LDLR-201ENST00000252444 ANKRD30AQ9BXX3 1397 aa18.87■□□□□ 0.61
LDLR-201ENST00000252444 PRDM2Q13029 1718 aa18.87■□□□□ 0.61
LDLR-201ENST00000252444 NEFMP07197 916 aa18.87■□□□□ 0.61
LDLR-201ENST00000252444 PRXQ9BXM0 1461 aa18.86■□□□□ 0.61
LDLR-201ENST00000252444 CHIC2Q9UKJ5 165 aa18.86■□□□□ 0.61
LDLR-201ENST00000252444 FYCO1Q9BQS8 1478 aa18.86■□□□□ 0.61
LDLR-201ENST00000252444 FHOD3Q2V2M9 1422 aa18.85■□□□□ 0.61
LDLR-201ENST00000252444 CASKIN1Q8WXD9 1431 aa18.83■□□□□ 0.61
LDLR-201ENST00000252444 HDGFP51858 240 aaKnown RBP18.83■□□□□ 0.6
LDLR-201ENST00000252444 CDCA8Q53HL2 280 aa18.82■□□□□ 0.6
LDLR-201ENST00000252444 SETD5Q9C0A6 1442 aa18.82■□□□□ 0.6
LDLR-201ENST00000252444 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.78■□□□□ 0.67e-10■■□□□ 13.2
LDLR-201ENST00000252444 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.62e-7■■■■■ 27.4
LDLR-201ENST00000252444 HECW1Q76N89 1606 aa18.78■□□□□ 0.6
LDLR-201ENST00000252444 SYNJ2O15056 1496 aa18.78■□□□□ 0.6
LDLR-201ENST00000252444 KIAA0586Q9BVV6 1533 aa18.78■□□□□ 0.6
LDLR-201ENST00000252444 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
LDLR-201ENST00000252444 CHGAP10645 457 aaKnown RBP18.75■□□□□ 0.59
LDLR-201ENST00000252444 RRP7BPQ9NSQ0 103 aa18.75■□□□□ 0.59
LDLR-201ENST00000252444 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
LDLR-201ENST00000252444 PLEKHH2Q8IVE3 1493 aa18.73■□□□□ 0.59
LDLR-201ENST00000252444 EHBP1L1Q8N3D4 1523 aa18.72■□□□□ 0.59
LDLR-201ENST00000252444 IQGAP2Q13576 1575 aa18.69■□□□□ 0.58
LDLR-201ENST00000252444 YTHDC1Q96MU7 727 aaKnown RBP18.68■□□□□ 0.58
LDLR-201ENST00000252444 EIF4G2P78344 907 aaKnown RBP eCLIP18.68■□□□□ 0.58
LDLR-201ENST00000252444 URB2Q14146 1524 aaKnown RBP18.67■□□□□ 0.58
LDLR-201ENST00000252444 MYOM3Q5VTT5 1437 aa18.67■□□□□ 0.58
LDLR-201ENST00000252444 PPP1R15AO75807 674 aaPredicted RBP18.65■□□□□ 0.58
LDLR-201ENST00000252444 MAP3K1Q13233 1512 aa18.64■□□□□ 0.57
LDLR-201ENST00000252444 ERICH6Q7L0X2 663 aa18.63■□□□□ 0.57
LDLR-201ENST00000252444 ARID4BQ4LE39 1312 aaPredicted RBP18.63■□□□□ 0.57
LDLR-201ENST00000252444 PRG4Q92954 1404 aaPredicted RBP18.61■□□□□ 0.57
LDLR-201ENST00000252444 GRIN2AQ12879 1464 aa18.61■□□□□ 0.57
LDLR-201ENST00000252444 SPAG9O60271 1321 aaKnown RBP18.59■□□□□ 0.57
LDLR-201ENST00000252444 UACAQ9BZF9 1416 aa18.59■□□□□ 0.57
LDLR-201ENST00000252444 LRRC9Q6ZRR7 1453 aa18.58■□□□□ 0.57
LDLR-201ENST00000252444 MIA2Q96PC5 1412 aa18.58■□□□□ 0.56
LDLR-201ENST00000252444 WDR62O43379 1518 aa18.58■□□□□ 0.56
LDLR-201ENST00000252444 THOC2Q8NI27 1593 aaKnown RBP18.58■□□□□ 0.56
LDLR-201ENST00000252444 STAC3Q96MF2 364 aa18.54■□□□□ 0.56
LDLR-201ENST00000252444 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.53■□□□□ 0.56
LDLR-201ENST00000252444 KANK4Q5T7N3 995 aaPredicted RBP18.52■□□□□ 0.55
LDLR-201ENST00000252444 FGD6Q6ZV73 1430 aa18.51■□□□□ 0.55
LDLR-201ENST00000252444 SUPT6HQ7KZ85 1726 aaKnown RBP18.5■□□□□ 0.55
LDLR-201ENST00000252444 TROQ12816 1431 aaPredicted RBP18.49■□□□□ 0.55
LDLR-201ENST00000252444 EIF3AQ14152 1382 aaKnown RBP18.49■□□□□ 0.55
LDLR-201ENST00000252444 TRHP20396 242 aaPredicted RBP18.48■□□□□ 0.55
LDLR-201ENST00000252444 ARAP1Q96P48 1450 aa18.48■□□□□ 0.55
LDLR-201ENST00000252444 TIAM1Q13009 1591 aa18.47■□□□□ 0.55
LDLR-201ENST00000252444 NCOA2Q15596 1464 aa18.46■□□□□ 0.55
LDLR-201ENST00000252444 RAB3GAP2Q9H2M9 1393 aa18.45■□□□□ 0.54
LDLR-201ENST00000252444 NUP155O75694 1391 aa18.45■□□□□ 0.54
LDLR-201ENST00000252444 KIF21AQ7Z4S6 1674 aa18.44■□□□□ 0.54
LDLR-201ENST00000252444 KDM2AQ9Y2K7 1162 aa18.43■□□□□ 0.54
LDLR-201ENST00000252444 ADAMTS12P58397 1594 aa18.43■□□□□ 0.54
LDLR-201ENST00000252444 ZBTB47Q9UFB7 747 aaPredicted RBP18.41■□□□□ 0.54
LDLR-201ENST00000252444 CTTNBP2Q8WZ74 1663 aa18.41■□□□□ 0.54
LDLR-201ENST00000252444 CARD11Q9BXL7 1154 aa18.41■□□□□ 0.54
LDLR-201ENST00000252444 RRBP1Q9P2E9 1410 aaKnown RBP18.4■□□□□ 0.54
LDLR-201ENST00000252444 ARHGAP5Q13017 1502 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms