RNA–Protein interactions for RNA: ENSMUST00000028280.13

Col5a1-201, Transcript of Collagen alpha-1(V) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col5a1, Length 8,406 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1-201ENSMUST00000028280 Sall2Q9QX96 1004 aa18.36■□□□□ 0.53
Col5a1-201ENSMUST00000028280 Tnnt2P50752 301 aa18.36■□□□□ 0.53
Col5a1-201ENSMUST00000028280 Eid3Q3V124 375 aa18.35■□□□□ 0.53
Col5a1-201ENSMUST00000028280 Trim30dE9PWL0 497 aa18.34■□□□□ 0.53
Col5a1-201ENSMUST00000028280 Htatsf1Q8BGC0 757 aa18.33■□□□□ 0.53
Col5a1-201ENSMUST00000028280 Cep164Q5DU05 1446 aa18.32■□□□□ 0.52
Col5a1-201ENSMUST00000028280 Znf316Q6PGE4 1016 aa18.32■□□□□ 0.52
Col5a1-201ENSMUST00000028280 Znf326O88291 580 aa18.31■□□□□ 0.52
Col5a1-201ENSMUST00000028280 Ccdc27Q3V036 639 aa18.3■□□□□ 0.52
Col5a1-201ENSMUST00000028280 Ifnlr1Q8CGK5 535 aa18.28■□□□□ 0.52
Col5a1-201ENSMUST00000028280 Plcb2A3KGF7 1181 aa18.27■□□□□ 0.51
Col5a1-201ENSMUST00000028280 Arid4bA2CG63 1314 aaKnown RBP18.26■□□□□ 0.51
Col5a1-201ENSMUST00000028280 Fam71e1A1L3C1 212 aa18.25■□□□□ 0.51
Col5a1-201ENSMUST00000028280 Rb1cc1Q9ESK9 1588 aa18.23■□□□□ 0.51
Col5a1-201ENSMUST00000028280 PnnO35691 725 aaKnown RBP18.19■□□□□ 0.5
Col5a1-201ENSMUST00000028280 Mrs2Q5NCE8 434 aa18.19■□□□□ 0.5
Col5a1-201ENSMUST00000028280 Bcl11aQ9QYE3 773 aa18.17■□□□□ 0.5
Col5a1-201ENSMUST00000028280 Trim26Q99PN3 545 aa18.16■□□□□ 0.5
Col5a1-201ENSMUST00000028280 Irx3P81067 507 aa18.13■□□□□ 0.49
Col5a1-201ENSMUST00000028280 Mak16Q8BGS0 296 aaKnown RBP18.12■□□□□ 0.49
Col5a1-201ENSMUST00000028280 Abcc8B2RUS7 1588 aa18.12■□□□□ 0.49
Col5a1-201ENSMUST00000028280 Clstn2Q9ER65 966 aa18.11■□□□□ 0.49
Col5a1-201ENSMUST00000028280 Casc1Q6TDU8 730 aa18.1■□□□□ 0.49
Col5a1-201ENSMUST00000028280 Calcoco2A2A6M5 331 aa18.08■□□□□ 0.48
Col5a1-201ENSMUST00000028280 Ppm1gQ61074 542 aa18.07■□□□□ 0.48
Col5a1-201ENSMUST00000028280 AU015836B2RUM3 263 aa18.05■□□□□ 0.48
Col5a1-201ENSMUST00000028280 1700123L14RikQ3V2K7 440 aa18.04■□□□□ 0.48
Col5a1-201ENSMUST00000028280 BlmO88700 1416 aa18.02■□□□□ 0.48
Col5a1-201ENSMUST00000028280 Erich6bQ9D4S6 220 aa18.01■□□□□ 0.47
Col5a1-201ENSMUST00000028280 SetQ9EQU5 289 aaKnown RBP18■□□□□ 0.47
Col5a1-201ENSMUST00000028280 Fkbp15Q6P9Q6 1216 aaKnown RBP18■□□□□ 0.47
Col5a1-201ENSMUST00000028280 Spryd3E9Q9B3 442 aa17.99■□□□□ 0.47
Col5a1-201ENSMUST00000028280 MsnP26041 577 aaKnown RBP17.99■□□□□ 0.47
Col5a1-201ENSMUST00000028280 Map7O88735 730 aa17.96■□□□□ 0.47
Col5a1-201ENSMUST00000028280 Ofd1Q80Z25 1017 aa17.95■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Dnttip2Q8R2M2 758 aaKnown RBP17.94■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Gm973E9Q295 1059 aa17.92■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Chic2Q9D9G3 165 aa17.92■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Pes1Q9EQ61 584 aaKnown RBP17.92■□□□□ 0.46
Col5a1-201ENSMUST00000028280 P3h3Q8CG70 732 aa17.91■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Irx6Q9ER75 438 aa17.91■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Plppr3Q7TPB0 716 aa17.9■□□□□ 0.46
Col5a1-201ENSMUST00000028280 Clstn1Q9EPL2 979 aa17.89■□□□□ 0.45
Col5a1-201ENSMUST00000028280 Chmp4bQ9D8B3 224 aaKnown RBP17.87■□□□□ 0.45
Col5a1-201ENSMUST00000028280 Wwc2Q6NXJ0 1187 aa17.87■□□□□ 0.45
Col5a1-201ENSMUST00000028280 Apbb1Q9QXJ1 710 aa17.85■□□□□ 0.45
Col5a1-201ENSMUST00000028280 Safb2Q80YR5 991 aaKnown RBP17.81■□□□□ 0.44
Col5a1-201ENSMUST00000028280 IqubQ8CDK3 788 aa17.81■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Pcmtd1P59913 357 aa17.81■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Taok2Q6ZQ29 1240 aa17.8■□□□□ 0.44
Col5a1-201ENSMUST00000028280 MccE9PWI3 1003 aa17.79■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Cwc22Q8C5N3 908 aaKnown RBP17.79■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Map7d2A2AG50 781 aa17.78■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Setd5Q5XJV7 1441 aa17.78■□□□□ 0.44
Col5a1-201ENSMUST00000028280 Dbr1Q923B1 550 aa17.77■□□□□ 0.44
Col5a1-201ENSMUST00000028280 BccipQ9CWI3 316 aa17.77■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Rgl3Q3UYI5 709 aa17.77■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Ubl4bQ9CQ84 188 aa17.76■□□□□ 0.43
Col5a1-201ENSMUST00000028280 PtmsQ9D0J8 101 aaKnown RBP17.75■□□□□ 0.43
Col5a1-201ENSMUST00000028280 KnstrnQ9D9Z1 312 aaKnown RBP17.75■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Rrp12Q6P5B0 1295 aaKnown RBP17.75■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Hsp90b1P08113 802 aaKnown RBP17.74■□□□□ 0.43
Col5a1-201ENSMUST00000028280 RdxP26043 583 aaKnown RBP17.74■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Sh3bp5Q9Z131 463 aa17.74■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Cald1E9QA15 768 aaKnown RBP17.74■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Podxl2Q8CAE9 603 aa17.74■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Mbd3Q9Z2D8 285 aaKnown RBP17.73■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Armcx1Q9CX83 456 aa17.73■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Mapk8ip3Q9ESN9 1337 aa17.73■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Rtn4Q99P72 1162 aaKnown RBP17.72■□□□□ 0.43
Col5a1-201ENSMUST00000028280 B4galnt3Q6L8S8 986 aa17.72■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Anapc15P60007 132 aa17.72■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Zfp777B9EKF4 885 aa17.71■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Kiaa0754Q69ZZ9 979 aa17.71■□□□□ 0.43
Col5a1-201ENSMUST00000028280 Neurod2Q62414 383 aa17.7■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Gm6268A2A3U9 297 aa17.69■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Exosc9Q9JHI7 438 aaKnown RBP17.69■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Card11Q8CIS0 1159 aa17.67■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Ftsj3Q9DBE9 838 aaKnown RBP17.67■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Eea1Q8BL66 1411 aa17.67■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Iqcf3Q9D498 203 aa17.66■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Srpk2O54781 681 aaKnown RBP17.66■□□□□ 0.42
Col5a1-201ENSMUST00000028280 Tpm3-rs7D3Z2H9 248 aa17.63■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Dnai1Q8C0M8 701 aa17.63■□□□□ 0.41
Col5a1-201ENSMUST00000028280 NudcO35685 332 aaKnown RBP17.63■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Ccdc18Q640L5 1455 aa17.61■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Mroh3A0A1D5RM54 893 aa17.61■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Noc3lQ8VI84 807 aaKnown RBP17.6■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Kdm2aP59997 1161 aa17.6■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Rassf8Q8CJ96 419 aa17.6■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Mia2Q91ZV0 1396 aa17.6■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Trim30aP15533 496 aa17.59■□□□□ 0.41
Col5a1-201ENSMUST00000028280 Gpatch11Q3UFS4 262 aa17.58■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Baz1aO88379 1555 aa17.58■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Ddrgk1Q80WW9 315 aa17.57■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Gm20521D3Z5F7 333 aa17.57■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Tcerg1Q8CGF7 1100 aaKnown RBP17.56■□□□□ 0.4
Col5a1-201ENSMUST00000028280 1700019A02RikA0A087WPV9 146 aa17.56■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Grwd1Q810D6 446 aaKnown RBP17.55■□□□□ 0.4
Col5a1-201ENSMUST00000028280 Becn1O88597 448 aa17.55■□□□□ 0.4
Retrieved 100 of 22,080 RNA–protein pairs in 19.8 ms