RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	YKR051W	P36142	418 aa		4.07	□□□□□ -1.76
USA1	YML029W	SWC5	P38326	303 aa		4.07	□□□□□ -1.76
USA1	YML029W	NDC80	P40460	691 aa		4.07	□□□□□ -1.76
USA1	YML029W	TMA108	P40462	946 aa		4.07	□□□□□ -1.76
USA1	YML029W	ATH1	P48016	1211 aa		4.07	□□□□□ -1.76
USA1	YML029W	INP52	P50942	1183 aa		4.07	□□□□□ -1.76
USA1	YML029W	LEE1	Q02799	301 aa	Known RBP	4.07	□□□□□ -1.76
USA1	YML029W	HOS3	Q02959	697 aa	Known RBP	4.07	□□□□□ -1.76
USA1	YML029W	SPP1	Q03012	353 aa		4.07	□□□□□ -1.76
USA1	YML029W	MUB1	Q03162	620 aa		4.07	□□□□□ -1.76
USA1	YML029W	SND1	Q04007	877 aa		4.07	□□□□□ -1.76
USA1	YML029W	YDR222W	Q04925	415 aa		4.07	□□□□□ -1.76
USA1	YML029W	APL5	Q08951	932 aa	Known RBP	4.07	□□□□□ -1.76
USA1	YML029W	DAP1	Q12091	152 aa		4.07	□□□□□ -1.76
USA1	YML029W	ERG11	P10614	530 aa		4.07	□□□□□ -1.76
USA1	YML029W	TYE7	P33122	291 aa	Predicted RBP	4.07	□□□□□ -1.76
USA1	YML029W	CEP3	P40969	608 aa		4.07	□□□□□ -1.76
USA1	YML029W	NNF1	P47149	201 aa		4.07	□□□□□ -1.76
USA1	YML029W	GPD1	Q00055	391 aa	Known RBP	4.07	□□□□□ -1.76
USA1	YML029W	VPS60	Q03390	229 aa		4.07	□□□□□ -1.76
USA1	YML029W	PRC1	P00729	532 aa		4.06	□□□□□ -1.76
USA1	YML029W	BI2	P03873	423 aa		4.06	□□□□□ -1.76
USA1	YML029W	BI4	P03879	638 aa		4.06	□□□□□ -1.76
USA1	YML029W	MAS1	P10507	462 aa		4.06	□□□□□ -1.76
USA1	YML029W	ECM13	P38195	257 aa		4.06	□□□□□ -1.76
USA1	YML029W	MMS21	P38632	267 aa		4.06	□□□□□ -1.76
USA1	YML029W	APM2	P38700	605 aa		4.06	□□□□□ -1.76
USA1	YML029W	PEX28	P38848	579 aa		4.06	□□□□□ -1.76
USA1	YML029W	MAD1	P40957	749 aa		4.06	□□□□□ -1.76
USA1	YML029W	KAP114	P53067	1004 aa		4.06	□□□□□ -1.76
USA1	YML029W	YPL014W	Q02606	381 aa		4.06	□□□□□ -1.76
USA1	YML029W	POB3	Q04636	552 aa	Known RBP	4.06	□□□□□ -1.76
USA1	YML029W	ECM22	Q05958	814 aa	Predicted RBP	4.06	□□□□□ -1.76
USA1	YML029W	DIS3	Q08162	1001 aa	Known RBP	4.06	□□□□□ -1.76
USA1	YML029W	MDM38	Q08179	573 aa		4.06	□□□□□ -1.76
USA1	YML029W	CLP1	Q08685	445 aa	Predicted RBP	4.06	□□□□□ -1.76
USA1	YML029W	NBP2	Q12163	236 aa		4.06	□□□□□ -1.76
USA1	YML029W	BI3	Q9ZZW7	517 aa		4.06	□□□□□ -1.76
USA1	YML029W	HIP1	P06775	603 aa		4.06	□□□□□ -1.76
USA1	YML029W	TUB3	P09734	445 aa	Known RBP	4.06	□□□□□ -1.76
USA1	YML029W	SFL1	P20134	766 aa		4.06	□□□□□ -1.76
USA1	YML029W	DPB3	P27344	201 aa		4.06	□□□□□ -1.76
USA1	YML029W	DBF4	P32325	704 aa		4.06	□□□□□ -1.76
USA1	YML029W	SFB3	P38810	929 aa		4.06	□□□□□ -1.76
USA1	YML029W	SAK1	P38990	1142 aa		4.06	□□□□□ -1.76
USA1	YML029W	PRM9	P39551	298 aa		4.06	□□□□□ -1.76
USA1	YML029W	GUF1	P46943	645 aa		4.06	□□□□□ -1.76
USA1	YML029W	PFD1	P46988	109 aa		4.06	□□□□□ -1.76
USA1	YML029W	ZAP1	P47043	880 aa		4.06	□□□□□ -1.76
USA1	YML029W	RNH70	P53331	553 aa		4.06	□□□□□ -1.76
USA1	YML029W	TUB4	P53378	473 aa		4.06	□□□□□ -1.76
USA1	YML029W	YNL011C	P53980	444 aa		4.06	□□□□□ -1.76
USA1	YML029W	SLG1	P54867	378 aa		4.06	□□□□□ -1.76
USA1	YML029W	PNG1	Q02890	363 aa		4.06	□□□□□ -1.76
USA1	YML029W	NSE5	Q03718	556 aa		4.06	□□□□□ -1.76
USA1	YML029W	KAP95	Q06142	861 aa	Known RBP	4.06	□□□□□ -1.76
USA1	YML029W	FLC1	Q08967	793 aa		4.06	□□□□□ -1.76
USA1	YML029W	VPS54	Q12071	889 aa		4.06	□□□□□ -1.76
USA1	YML029W	CCP1	P00431	361 aa		4.05	□□□□□ -1.76
USA1	YML029W	MIS1	P09440	975 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	RRP1	P35178	278 aa	Predicted RBP	4.05	□□□□□ -1.76
USA1	YML029W	AGP2	P38090	596 aa		4.05	□□□□□ -1.76
USA1	YML029W	REI1	P38344	393 aa	Predicted RBP	4.05	□□□□□ -1.76
USA1	YML029W	SMF1	P38925	575 aa		4.05	□□□□□ -1.76
USA1	YML029W	ARG2	P40360	574 aa		4.05	□□□□□ -1.76
USA1	YML029W	KTR7	P40504	517 aa		4.05	□□□□□ -1.76
USA1	YML029W	RTT101	P47050	842 aa		4.05	□□□□□ -1.76
USA1	YML029W	HLJ1	P48353	224 aa		4.05	□□□□□ -1.76
USA1	YML029W	DIG1	Q03063	452 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	MTG1	Q03151	367 aa	Predicted RBP	4.05	□□□□□ -1.76
USA1	YML029W	MSH6	Q03834	1242 aa		4.05	□□□□□ -1.76
USA1	YML029W	YMR114C	Q04471	368 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	PRM6	Q04705	352 aa		4.05	□□□□□ -1.76
USA1	YML029W	IVY1	Q04934	453 aa		4.05	□□□□□ -1.76
USA1	YML029W	THI7	Q05998	598 aa		4.05	□□□□□ -1.76
USA1	YML029W	PMT7	Q06644	662 aa		4.05	□□□□□ -1.76
USA1	YML029W	RIO1	Q12196	484 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	RRD2	Q12461	358 aa		4.05	□□□□□ -1.76
USA1	YML029W	LRE1	P25579	583 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	SEC1	P30619	724 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	SRB2	P34162	210 aa		4.05	□□□□□ -1.76
USA1	YML029W	BYE1	P36106	594 aa		4.05	□□□□□ -1.76
USA1	YML029W	ABZ1	P37254	787 aa	Predicted RBP	4.05	□□□□□ -1.76
USA1	YML029W	NCL1	P38205	684 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	YBR053C	P38235	358 aa		4.05	□□□□□ -1.76
USA1	YML029W	NUP60	P39705	539 aa		4.05	□□□□□ -1.76
USA1	YML029W	MND2	P40577	368 aa		4.05	□□□□□ -1.76
USA1	YML029W	SAP185	P40856	1058 aa		4.05	□□□□□ -1.76
USA1	YML029W	YJL132W	P47014	750 aa		4.05	□□□□□ -1.76
USA1	YML029W	RSM26	P47141	266 aa		4.05	□□□□□ -1.76
USA1	YML029W	TOF2	Q02208	771 aa		4.05	□□□□□ -1.76
USA1	YML029W	YLR257W	Q06146	321 aa	Known RBP	4.05	□□□□□ -1.76
USA1	YML029W	MPC54	Q08550	464 aa		4.05	□□□□□ -1.76
USA1	YML029W	SVS1	Q12254	260 aa		4.05	□□□□□ -1.76
USA1	YML029W	HRT3	Q12347	344 aa		4.05	□□□□□ -1.76
USA1	YML029W	APE1	P14904	514 aa		4.04	□□□□□ -1.76
USA1	YML029W	PAP1	P29468	568 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	RAD16	P31244	790 aa		4.04	□□□□□ -1.76
USA1	YML029W	YBR225W	P38321	900 aa		4.04	□□□□□ -1.76
USA1	YML029W	VAC8	P39968	578 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 140.7 ms