RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	RPP2A	P05319	106 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	PRP6	P19735	899 aa	Predicted RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	SED4	P25365	1065 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	RPL5	P26321	297 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	CCR4	P31384	837 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	YKR051W	P36142	418 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	HSL7	P38274	827 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	AIM20	P40451	204 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	BNA2	P47125	453 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	NPY1	P53164	384 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
LCB4	YOR171C	SLU7	Q02775	382 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	MTQ2	Q03920	221 aa	Predicted RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	RAD33	Q04231	177 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	ASM4	Q05166	528 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	ARV1	Q06541	321 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	SSP2	Q08646	371 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	CLP1	Q08685	445 aa	Predicted RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	RRP6	Q12149	733 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	NPC2	Q12408	173 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	APA1	P16550	321 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	PET123	P17558	318 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	HNM1	P19807	563 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	RNQ1	P25367	405 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	DPH2	P32461	534 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	EUG1	P32474	517 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	ARC19	P33204	171 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	VPS8	P39702	1274 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	GPD2	P41911	440 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	SAE2	P46946	345 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	SSY5	P47002	699 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	ZDS2	P54786	942 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	NSE5	Q03718	556 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	YLH47	Q06493	454 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	PCL8	Q08966	492 aa		3.54	□□□□□ -1.84
LCB4	YOR171C	NEW1	Q08972	1196 aa	Known RBP	3.54	□□□□□ -1.84
LCB4	YOR171C	TUB3	P09734	445 aa	Known RBP	3.53	□□□□□ -1.84
LCB4	YOR171C	SPO16	P17122	198 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	PRP4	P20053	465 aa	Known RBP	3.53	□□□□□ -1.84
LCB4	YOR171C	POL4	P25615	582 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	PTP2	P29461	750 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	SWC3	P31376	625 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	SEC21	P32074	935 aa	Known RBP	3.53	□□□□□ -1.84
LCB4	YOR171C	DBF20	P32328	564 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	PLC1	P32383	869 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	PRP19	P32523	503 aa	Known RBP	3.53	□□□□□ -1.84
LCB4	YOR171C	ELM1	P32801	640 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	CKB2	P38930	258 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.53	□□□□□ -1.84	not detected
LCB4	YOR171C	PLB1	P39105	664 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	YIL166C	P40445	542 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	GCD10	P41814	478 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	YFL052W	P43551	465 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	TAP42	Q04372	366 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	ESC8	Q08119	714 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	SDH5	Q08230	162 aa		3.53	□□□□□ -1.84
LCB4	YOR171C	RUD3	Q12234	484 aa	Known RBP	3.53	□□□□□ -1.84
LCB4	YOR171C	SUI2	P20459	304 aa	Known RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	TOD6	P34219	525 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	THI80	P35202	319 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	FLR1	P38124	548 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	BCD1	P38772	366 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	MSS4	P38994	779 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	SHE10	P53075	577 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	ASI2	P53895	289 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	MUS81	Q04149	632 aa	Predicted RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	YMR111C	Q04461	462 aa	Predicted RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	RPN7	Q06103	429 aa	Known RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	FAP7	Q12055	197 aa	Predicted RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	STF1	P01098	86 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	MER1	P16523	270 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	3.52	□□□□□ -1.85	not detected
LCB4	YOR171C	LST4	P34239	828 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	YKR018C	P36114	725 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	RIM4	P38741	713 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	LRP1	P38801	184 aa	Known RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	SAK1	P38990	1142 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	RTT105	P40063	208 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	PFA3	P42836	336 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	RET2	P43621	546 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	AVT1	P47082	602 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	RAD17	P48581	401 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	ALF1	P53904	254 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	ARP4	P80428	489 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	TMA10	Q06177	86 aa		3.52	□□□□□ -1.85
LCB4	YOR171C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	3.52	□□□□□ -1.85	not detected
LCB4	YOR171C	RRP36	Q12481	300 aa	Predicted RBP	3.52	□□□□□ -1.85
LCB4	YOR171C	RPC40	P07703	335 aa	Known RBP	3.51	□□□□□ -1.85
LCB4	YOR171C	DAL80	P26343	269 aa		3.51	□□□□□ -1.85
LCB4	YOR171C	TFC4	P33339	1025 aa		3.51	□□□□□ -1.85
LCB4	YOR171C	YHL041W	P38730	149 aa		3.51	□□□□□ -1.85
LCB4	YOR171C	OTU2	P38747	307 aa	Known RBP	3.51	□□□□□ -1.85
LCB4	YOR171C	YML6	P51998	286 aa		3.51	□□□□□ -1.85
LCB4	YOR171C	PCL10	P53124	433 aa		3.51	□□□□□ -1.85
LCB4	YOR171C	NCS2	P53923	493 aa	Predicted RBP	3.51	□□□□□ -1.85
LCB4	YOR171C	CWC21	Q03375	135 aa	Known RBP	3.51	□□□□□ -1.85
LCB4	YOR171C	MRPL25	P23369	157 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	KAR4	P25583	335 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	NIC96	P34077	839 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	YKL133C	P36066	463 aa		3.5	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms