RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	ARG4	P04076	463 aa	Predicted RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	VMA4	P22203	233 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	SPT5	P27692	1063 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	SMY1	P32364	656 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	SRB4	P32569	687 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	OAF3	P36023	863 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	BIM1	P40013	344 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	PRK1	P40494	810 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	BRE2	P43132	505 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	NSG2	P53898	299 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	HIF1	Q12373	385 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	HIS4	P00815	799 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	TPK2	P06245	380 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	PRO3	P32263	286 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	GDA1	P32621	518 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	VPS35	P34110	944 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	TRZ1	P36159	838 aa	Predicted RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	TSC10	P38342	320 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	ASG1	P40467	964 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	DOT5	P40553	215 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	IES1	P43579	692 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	SAE2	P46946	345 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	UTP22	P53254	1237 aa	Predicted RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	PRP3	Q03338	469 aa	Predicted RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	CDC60	P26637	1090 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	EAP1	P36041	632 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	DSN1	P40568	576 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	ILM1	P47155	203 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	YJR142W	P47173	342 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	BRO1	P48582	844 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	DON1	Q05610	365 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	CDC8	P00572	216 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	MSH3	P25336	1018 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	PSE1	P32337	1089 aa	Known RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	YKR018C	P36114	725 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	SPP381	P38282	291 aa	Predicted RBP	3.87	□□□□□ -1.79
SSM4	YIL030C	HSM3	P38348	480 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	YAP5	P40574	245 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	LCB2	P40970	561 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	NMD5	P46970	1048 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	RCF2	P53721	224 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	GUD1	Q07729	489 aa		3.87	□□□□□ -1.79
SSM4	YIL030C	NAT1	P12945	854 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	SIT4	P20604	311 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	RAD53	P22216	821 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	RIP-Chip
SSM4	YIL030C	ILV6	P25605	309 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	MSH2	P25847	964 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	RPC82	P32349	654 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	RAD54	P32863	898 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	UTP7	P40055	554 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	KAP114	P53067	1004 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	VID30	P53076	958 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	YNL011C	P53980	444 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	YDR179W-A	Q03983	463 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	GGA1	Q06336	557 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	GNT1	Q12096	491 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	MDM20	Q12387	796 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	MAK11	P20484	414 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	MRP4	P32902	394 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	YKL091C	P33324	310 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	HPC2	Q01448	625 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	RUD3	Q12234	484 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	OCA6	Q12454	224 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	HEL1	P36113	551 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	YBR287W	P38355	427 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	ALG2	P43636	503 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	SHE10	P53075	577 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	YGR125W	P53273	1036 aa		3.86	□□□□□ -1.79
SSM4	YIL030C	DAK1	P54838	584 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	RSA3	Q05942	220 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	WRS1	Q12109	432 aa	Known RBP	3.86	□□□□□ -1.79
SSM4	YIL030C	CLN3	P13365	580 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	URA4	P20051	364 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	ARG1	P22768	420 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	TPS2	P31688	896 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	TMT1	P32643	299 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	AST1	P35183	429 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	PAN5	P38787	379 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	GAA1	P39012	614 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	RIM21	P48565	533 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	SOV1	Q04748	898 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	EIS1	Q05050	843 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	TSR1	Q07381	788 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	FRA1	Q07825	749 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	CWC2	Q12046	339 aa	Predicted RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	PUS1	Q12211	544 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	YMR085W	P0CF18	432 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	PDC6	P26263	563 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	PPS1	P38148	807 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	PAN2	P53010	1115 aa	Predicted RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	SEN54	Q02825	467 aa	Predicted RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	FRK1	Q03002	865 aa	Predicted RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	YLR297W	Q05899	129 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	RAD10	P06838	210 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	RAD14	P28519	371 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	RCN1	P36054	211 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	SPT8	P38915	602 aa		3.85	□□□□□ -1.79
SSM4	YIL030C	ARB1	P40024	610 aa	Known RBP	3.85	□□□□□ -1.79
SSM4	YIL030C	LCP5	P40079	357 aa	Predicted RBP	3.85	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms