RNA–Protein interactions for RNA: YKR053C

YSR3, Transcript of Dihydrosphingosine 1-phosphate phosphatase, yeast

Gene YSR3, Length 1,215 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YSR3	YKR053C	TVP23	P38962	199 aa		11.35	□□□□□ -0.59
YSR3	YKR053C	PIL1	P53252	339 aa	Known RBP	11.35	□□□□□ -0.59
YSR3	YKR053C	YLH47	Q06493	454 aa		11.35	□□□□□ -0.59
YSR3	YKR053C	SMC5	Q08204	1093 aa		11.35	□□□□□ -0.59
YSR3	YKR053C	SMC6	Q12749	1114 aa		11.35	□□□□□ -0.59
YSR3	YKR053C	SRD1	P09007	221 aa		11.34	□□□□□ -0.59
YSR3	YKR053C	EFT1	P32324	842 aa	Known RBP	11.34	□□□□□ -0.59
YSR3	YKR053C	SDA1	P53313	767 aa	Known RBP	11.34	□□□□□ -0.59
YSR3	YKR053C	YNL115C	P53925	644 aa		11.34	□□□□□ -0.59
YSR3	YKR053C	FUB1	P25659	250 aa		11.33	□□□□□ -0.6
YSR3	YKR053C	PRX1	P34227	261 aa	Known RBP	11.33	□□□□□ -0.6
YSR3	YKR053C	FYV10	P40492	516 aa		11.33	□□□□□ -0.6
YSR3	YKR053C	INP51	P40559	946 aa	Known RBP	11.33	□□□□□ -0.6
YSR3	YKR053C	EIS1	Q05050	843 aa	Known RBP	11.33	□□□□□ -0.6
YSR3	YKR053C	PTC5	Q12511	572 aa		11.33	□□□□□ -0.6
YSR3	YKR053C	TUF1	P02992	437 aa	Known RBP	11.32	□□□□□ -0.6
YSR3	YKR053C	MAL33	P38157	468 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	JHD1	P40034	492 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	RSC8	P43609	557 aa	Known RBP	11.32	□□□□□ -0.6
YSR3	YKR053C	NPA3	P47122	385 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	PEX14	P53112	341 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	PGA2	P53903	129 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	COQ9	Q05779	260 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	ECM29	P38737	1868 aa		11.32	□□□□□ -0.6
YSR3	YKR053C	DED1	P06634	604 aa	Known RBP	11.31	□□□□□ -0.6
YSR3	YKR053C	SWI6	P09959	803 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	TCP1	P12612	559 aa	Known RBP	11.31	□□□□□ -0.6
YSR3	YKR053C	SPO74	P45819	413 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	YGR035C	P53222	116 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	CBK1	P53894	756 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	ROD1	Q02805	837 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	HIF1	Q12373	385 aa		11.31	□□□□□ -0.6
YSR3	YKR053C	CKA2	P19454	339 aa		11.3	□□□□□ -0.6
YSR3	YKR053C	MCM3	P24279	971 aa	Known RBP	11.3	□□□□□ -0.6
YSR3	YKR053C	EAF5	P39995	279 aa		11.3	□□□□□ -0.6
YSR3	YKR053C	HFI1	Q12060	488 aa		11.3	□□□□□ -0.6
YSR3	YKR053C	BUD2	P33314	1104 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	DID4	P36108	232 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	DAK2	P43550	591 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	SAD1	P43589	448 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	ACF4	P47129	309 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	ADY4	Q05955	493 aa		11.29	□□□□□ -0.6
YSR3	YKR053C	YPR117W	Q06116	2489 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	YEL076C-A	P0CX16	216 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	YLR464W	P0CX17	216 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	BIK1	P11709	440 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	FRS2	P15625	503 aa	Known RBP	11.28	□□□□□ -0.6
YSR3	YKR053C	CAD1	P24813	409 aa	Known RBP	11.28	□□□□□ -0.6
YSR3	YKR053C	URA1	P28272	314 aa	Predicted RBP	11.28	□□□□□ -0.6
YSR3	YKR053C	YEL076C	P39971	216 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	RPN3	P40016	523 aa	Known RBP	11.28	□□□□□ -0.6
YSR3	YKR053C	NUP82	P40368	713 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	THI6	P41835	540 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	JJJ3	P47138	172 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	NCR1	Q12200	1170 aa		11.28	□□□□□ -0.6
YSR3	YKR053C	HXK1	P04806	485 aa	Known RBP	11.27	□□□□□ -0.61
YSR3	YKR053C	ATG19	P35193	415 aa		11.27	□□□□□ -0.61
YSR3	YKR053C	SIP3	P38717	1229 aa		11.27	□□□□□ -0.61
YSR3	YKR053C	MCM6	P53091	1017 aa	Known RBP	11.27	□□□□□ -0.61
YSR3	YKR053C	MUK1	Q02866	612 aa		11.27	□□□□□ -0.61
YSR3	YKR053C	SKY1	Q03656	742 aa		11.27	□□□□□ -0.61
YSR3	YKR053C	MMR1	Q06324	491 aa		11.27	□□□□□ -0.61
YSR3	YKR053C	FOB1	O13329	566 aa		11.26	□□□□□ -0.61
YSR3	YKR053C	RGP1	P16664	663 aa		11.26	□□□□□ -0.61
YSR3	YKR053C	RDS1	P25611	832 aa		11.26	□□□□□ -0.61
YSR3	YKR053C	UBA2	P52488	636 aa		11.26	□□□□□ -0.61
YSR3	YKR053C	NCS2	P53923	493 aa	Predicted RBP	11.26	□□□□□ -0.61
YSR3	YKR053C	DRE2	P36152	348 aa		11.25	□□□□□ -0.61
YSR3	YKR053C	PIH1	P38768	344 aa		11.25	□□□□□ -0.61
YSR3	YKR053C	ULP2	P40537	1034 aa	Predicted RBP	11.25	□□□□□ -0.61
YSR3	YKR053C	NOC3	Q07896	663 aa	Predicted RBP	11.25	□□□□□ -0.61
YSR3	YKR053C	HIS4	P00815	799 aa	Known RBP	11.24	□□□□□ -0.61
YSR3	YKR053C	WHI2	P12611	486 aa		11.24	□□□□□ -0.61
YSR3	YKR053C	PCT1	P13259	424 aa		11.24	□□□□□ -0.61
YSR3	YKR053C	TMT1	P32643	299 aa		11.24	□□□□□ -0.61
YSR3	YKR053C	PET10	P36139	283 aa		11.24	□□□□□ -0.61
YSR3	YKR053C	CUE3	P53137	624 aa	Known RBP	11.24	□□□□□ -0.61
YSR3	YKR053C	MAG2	Q06436	670 aa	Known RBP	11.24	□□□□□ -0.61
YSR3	YKR053C	PFK1	P16861	987 aa	Known RBP	11.23	□□□□□ -0.61
YSR3	YKR053C	DPH2	P32461	534 aa		11.23	□□□□□ -0.61
YSR3	YKR053C	COT1	P32798	439 aa		11.23	□□□□□ -0.61
YSR3	YKR053C	YAP1801	P38856	637 aa		11.23	□□□□□ -0.61
YSR3	YKR053C	YNL134C	P53912	376 aa	Known RBP	11.23	□□□□□ -0.61
YSR3	YKR053C	HRQ1	Q05549	1077 aa		11.23	□□□□□ -0.61
YSR3	YKR053C	TIF1	P10081	395 aa	Known RBP	11.22	□□□□□ -0.61
YSR3	YKR053C	DBP5	P20449	482 aa	Known RBP	11.22	□□□□□ -0.61
YSR3	YKR053C	ADE2	P21264	571 aa	Known RBP	11.22	□□□□□ -0.61
YSR3	YKR053C	ISY1	P21374	235 aa	Predicted RBP	11.22	□□□□□ -0.61
YSR3	YKR053C	RAM2	P29703	316 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	AVT1	P47082	602 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	GCV2	P49095	1034 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	GUP1	P53154	560 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	CAF130	P53280	1122 aa	Predicted RBP	11.22	□□□□□ -0.61
YSR3	YKR053C	ARK1	P53974	638 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	PCD1	Q12524	340 aa		11.22	□□□□□ -0.61
YSR3	YKR053C	MSD1	P15179	658 aa	Known RBP	11.21	□□□□□ -0.61
YSR3	YKR053C	MBR1	P23493	339 aa		11.21	□□□□□ -0.61
YSR3	YKR053C	RPC53	P25441	422 aa		11.21	□□□□□ -0.61
YSR3	YKR053C	VPS35	P34110	944 aa		11.21	□□□□□ -0.61
YSR3	YKR053C	RFT1	P38206	574 aa	Predicted RBP	11.21	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms