RNA–Protein interactions for RNA: YGR100W

MDR1, Transcript of Cytoplasmic GTPase-activating protein, yeast

Gene MDR1, Length 2,853 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MDR1	YGR100W	APC5	Q08683	685 aa		4.92	□□□□□ -1.62
MDR1	YGR100W	CHC1	P22137	1653 aa	Known RBP	4.92	□□□□□ -1.62
MDR1	YGR100W	ENO2	P00925	437 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	LPD1	P09624	499 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	CDC16	P09798	840 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	SEN2	P16658	377 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	BMH1	P29311	267 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	PEP7	P32609	515 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	SCT1	P32784	759 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	PEP12	P32854	288 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	NIP100	P33420	868 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	YKL222C	P35995	705 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	MAL33	P38157	468 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	YHR020W	P38708	688 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	AIM9	P40053	627 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	SNX4	P47057	423 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	SXM1	Q04175	944 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	YLH47	Q06493	454 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	OSW1	Q08692	278 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	RTT10	Q08924	1013 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	NUP192	P47054	1683 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	GYP6	P32806	458 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	BMH2	P34730	273 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	UGA2	P38067	497 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	HSM3	P38348	480 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	GCD14	P46959	383 aa	Predicted RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	SGM1	P47166	707 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	CTF4	Q01454	927 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	PCL8	Q08966	492 aa		4.91	□□□□□ -1.62
MDR1	YGR100W	SGT2	Q12118	346 aa	Known RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	SNU66	Q12420	587 aa	Predicted RBP	4.91	□□□□□ -1.62
MDR1	YGR100W	ARG4	P04076	463 aa	Predicted RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	MST1	P07236	462 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	ADE3	P07245	946 aa	Known RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	YMR085W	P0CF18	432 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	TPM1	P17536	199 aa	Known RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	PRP6	P19735	899 aa	Predicted RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.62	not detected
MDR1	YGR100W	MSH2	P25847	964 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	VPH2	P32341	215 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	STE5	P32917	917 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	HSP78	P33416	811 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	AXL1	P40851	1208 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	MDJ2	P42834	146 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	YPT11	P48559	417 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	RSM24	Q03976	319 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	APL1	P27351	700 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	PLC1	P32383	869 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	CBF2	P32504	956 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	TFC4	P33339	1025 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	YHR218W	P38899	603 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	TMA22	P47089	198 aa	Predicted RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	SSN8	P47821	323 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	LSG1	P53145	640 aa	Known RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	RTS3	P53289	263 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	DIP5	P53388	608 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	ALR1	Q08269	859 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	CLP1	Q08685	445 aa	Predicted RBP	4.9	□□□□□ -1.62
MDR1	YGR100W	SOG2	Q08817	791 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	BBP1	Q12365	385 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	YBL111C	Q3E7Y5	667 aa		4.9	□□□□□ -1.62
MDR1	YGR100W	USO1	P25386	1790 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	URE2	P23202	354 aa	Known RBP	4.9	□□□□□ -1.63
MDR1	YGR100W	ADY2	P25613	283 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	SEC65	P29478	273 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	SEC8	P32855	1065 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	STE13	P33894	931 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	YBR062C	P38239	180 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	MCM6	P53091	1017 aa	Known RBP	4.9	□□□□□ -1.63
MDR1	YGR100W	VAC14	Q06708	880 aa		4.9	□□□□□ -1.63
MDR1	YGR100W	LEU1	P07264	779 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	ILS1	P09436	1072 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	SEC2	P17065	759 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	PHO13	P19881	312 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	REC107	P21651	314 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	YBR242W	P38331	238 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	CCC2	P38995	1004 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	UBP15	P50101	1230 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	ATG1	P53104	897 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	YGR122W	P53272	402 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	DCP2	P53550	970 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	DML1	Q03652	475 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	ARP9	Q05123	467 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	MAG2	Q06436	670 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	YLR001C	Q07895	862 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	NUR1	Q12066	484 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	RRP6	Q12149	733 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	IES3	Q12345	250 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	RMP1	Q12530	201 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	TY1B-BR	Q12193	1756 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	TY1B-GR3	Q12316	1755 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	TY1B-OR	Q92393	1755 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	PHO3	P24031	467 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	NFU1	P32860	256 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	OCT1	P35999	772 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	AAP1	P37898	856 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	BUD16	P39988	312 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	LAM5	P43560	674 aa		4.89	□□□□□ -1.63
MDR1	YGR100W	SQS1	P53866	767 aa	Known RBP	4.89	□□□□□ -1.63
MDR1	YGR100W	ALF1	P53904	254 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms