RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeastyeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP85YJR042W KCC4P25389 1037 aa4.34□□□□□ -1.71
NUP85YJR042W SFP1P32432 683 aa4.34□□□□□ -1.71
NUP85YJR042W CIC1P38779 376 aaKnown RBP4.34□□□□□ -1.71
NUP85YJR042W APE4P38821 490 aa4.34□□□□□ -1.71
NUP85YJR042W MNT3P40549 630 aa4.34□□□□□ -1.71
NUP85YJR042W NPY1P53164 384 aa4.34□□□□□ -1.71
NUP85YJR042W UTP8P53276 713 aaKnown RBP4.34□□□□□ -1.71
NUP85YJR042W CTF4Q01454 927 aa4.34□□□□□ -1.71
NUP85YJR042W RTT10Q08924 1013 aa4.34□□□□□ -1.71
NUP85YJR042W MDM12Q92328 271 aa4.34□□□□□ -1.71
NUP85YJR042W TOP3P13099 656 aa4.34□□□□□ -1.72
NUP85YJR042W NUD1P32336 851 aa4.34□□□□□ -1.72
NUP85YJR042W TBF1Q02457 562 aa4.34□□□□□ -1.72
NUP85YJR042W ULP1Q02724 621 aa4.34□□□□□ -1.72
NUP85YJR042W MTQ2Q03920 221 aaPredicted RBP4.34□□□□□ -1.72
NUP85YJR042W SHE9Q04172 456 aa4.34□□□□□ -1.72
NUP85YJR042W RRP6Q12149 733 aaKnown RBP4.34□□□□□ -1.72
NUP85YJR042W VAC17P25591 423 aa4.33□□□□□ -1.72
NUP85YJR042W IMP2'P32351 346 aa4.33□□□□□ -1.72
NUP85YJR042W ABZ1P37254 787 aaPredicted RBP4.33□□□□□ -1.72
NUP85YJR042W APM2P38700 605 aa4.33□□□□□ -1.72
NUP85YJR042W XDJ1P39102 459 aa4.33□□□□□ -1.72
NUP85YJR042W IRR1P40541 1150 aa4.33□□□□□ -1.72
NUP85YJR042W ALA1P40825 983 aaKnown RBP4.33□□□□□ -1.72
NUP85YJR042W ERR3P42222 437 aa4.33□□□□□ -1.72
NUP85YJR042W EAF1Q06337 982 aa4.33□□□□□ -1.72
NUP85YJR042W MED1Q12321 566 aa4.33□□□□□ -1.72
NUP85YJR042W SPT7P35177 1332 aa4.33□□□□□ -1.72
NUP85YJR042W TRP2P00899 507 aaKnown RBP4.33□□□□□ -1.72
NUP85YJR042W INH1P01097 85 aa4.33□□□□□ -1.72
NUP85YJR042W FLP1P03870 423 aa4.33□□□□□ -1.72
NUP85YJR042W MSS18P08593 268 aa4.33□□□□□ -1.72
NUP85YJR042W PEX21P50091 288 aa4.33□□□□□ -1.72
NUP85YJR042W YGR016WP53209 190 aa4.33□□□□□ -1.72
NUP85YJR042W ADI1Q03677 179 aa4.33□□□□□ -1.72
NUP85YJR042W SXM1Q04175 944 aaKnown RBP4.33□□□□□ -1.72
NUP85YJR042W SPO75Q07798 868 aa4.33□□□□□ -1.72
NUP85YJR042W FAP7Q12055 197 aaPredicted RBP4.33□□□□□ -1.72
NUP85YJR042W OSH2Q12451 1283 aa4.33□□□□□ -1.72
NUP85YJR042W DAL3P32459 195 aa4.32□□□□□ -1.72
NUP85YJR042W NPL4P33755 580 aa4.32□□□□□ -1.72
NUP85YJR042W TYS1P36421 394 aaKnown RBP4.32□□□□□ -1.72
NUP85YJR042W BAP2P38084 609 aa4.32□□□□□ -1.72
NUP85YJR042W PAC1P39946 494 aaKnown RBP4.32□□□□□ -1.72
NUP85YJR042W HEH2Q03281 663 aa4.32□□□□□ -1.72
NUP85YJR042W YCS4Q06156 1176 aa4.32□□□□□ -1.72
NUP85YJR042W IMH1Q06704 911 aaKnown RBP4.32□□□□□ -1.72
NUP85YJR042W CDC45Q08032 650 aa4.32□□□□□ -1.72
NUP85YJR042W MSB4Q12317 492 aa4.32□□□□□ -1.72
NUP85YJR042W YOR093CQ12275 1648 aa4.32□□□□□ -1.72
NUP85YJR042W PTP2P29461 750 aa4.31□□□□□ -1.72
NUP85YJR042W HBS1P32769 611 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W EAP1P36041 632 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W RRN3P36070 627 aa4.31□□□□□ -1.72
NUP85YJR042W NOP4P37838 685 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W CCC2P38995 1004 aa4.31□□□□□ -1.72
NUP85YJR042W YEL023CP39992 682 aa4.31□□□□□ -1.72
NUP85YJR042W SRB7P47822 140 aa4.31□□□□□ -1.72
NUP85YJR042W ISM1P48526 1002 aa4.31□□□□□ -1.72
NUP85YJR042W ERP6P53198 216 aa4.31□□□□□ -1.72
NUP85YJR042W MEP3P53390 489 aa4.31□□□□□ -1.72
NUP85YJR042W KRE33P53914 1056 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W YNL058CP53947 316 aa4.31□□□□□ -1.72
NUP85YJR042W YPQ2Q06328 317 aa4.31□□□□□ -1.72
NUP85YJR042W MPC54Q08550 464 aa4.31□□□□□ -1.72
NUP85YJR042W TIF6Q12522 245 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W NUP157P40064 1391 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W BUD3P25558 1636 aa4.31□□□□□ -1.72
NUP85YJR042W SEC7P11075 2009 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W CYB2P00175 591 aa4.31□□□□□ -1.72
NUP85YJR042W HTA1P04911 132 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W HTA2P04912 132 aa4.31□□□□□ -1.72
NUP85YJR042W ARE1P25628 610 aa4.31□□□□□ -1.72
NUP85YJR042W MRS6P32864 603 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W YFL034WP43564 1073 aa4.31□□□□□ -1.72
NUP85YJR042W NIT2P47016 307 aa4.31□□□□□ -1.72
NUP85YJR042W GPI8P49018 411 aa4.31□□□□□ -1.72
NUP85YJR042W HOS2P53096 452 aaPredicted RBP4.31□□□□□ -1.72
NUP85YJR042W NPL3Q01560 414 aaKnown RBP RIP-Chip data4.31□□□□□ -1.72not detected
NUP85YJR042W TRS130Q03660 1102 aa4.31□□□□□ -1.72
NUP85YJR042W YLR225CQ05948 407 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W RRP9Q06506 573 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W YPL066WQ12194 479 aa4.31□□□□□ -1.72
NUP85YJR042W YSP2Q06681 1438 aa4.31□□□□□ -1.72
NUP85YJR042W CHC1P22137 1653 aaKnown RBP4.31□□□□□ -1.72
NUP85YJR042W MHP1P43638 1398 aa4.3□□□□□ -1.72
NUP85YJR042W VMA3P25515 160 aa4.3□□□□□ -1.72
NUP85YJR042W ANP1P32629 500 aa4.3□□□□□ -1.72
NUP85YJR042W TFC3P34111 1160 aa4.3□□□□□ -1.72
NUP85YJR042W VPS8P39702 1274 aa4.3□□□□□ -1.72
NUP85YJR042W HXT8P40886 569 aa4.3□□□□□ -1.72
NUP85YJR042W MID1P41821 548 aa4.3□□□□□ -1.72
NUP85YJR042W UPF3P48412 387 aaKnown RBP4.3□□□□□ -1.72
NUP85YJR042W CWH41P53008 833 aa4.3□□□□□ -1.72
NUP85YJR042W DPL1Q05567 589 aa4.3□□□□□ -1.72
NUP85YJR042W PHM6Q05637 104 aa4.3□□□□□ -1.72
NUP85YJR042W CMR1Q12510 522 aaKnown RBP4.3□□□□□ -1.72
NUP85YJR042W NIC96P34077 839 aa4.3□□□□□ -1.72
NUP85YJR042W RER2P35196 286 aa4.3□□□□□ -1.72
NUP85YJR042W MET13P53128 600 aa4.3□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms