RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	DRS1	P32892	752 aa	Known RBP	7.94	□□□□□ -1.14
NUP85	YJR042W	TFA1	P36100	482 aa		7.47	□□□□□ -1.21
NUP85	YJR042W	BFR2	Q06631	534 aa	Known RBP	7.21	□□□□□ -1.26
NUP85	YJR042W	MTC1	P47018	478 aa	Known RBP	7.09	□□□□□ -1.27
NUP85	YJR042W	TAF7	Q05021	590 aa		6.88	□□□□□ -1.31
NUP85	YJR042W	RQC2	Q12532	1038 aa	Known RBP	6.88	□□□□□ -1.31
NUP85	YJR042W	FAP1	P53971	965 aa		6.82	□□□□□ -1.32
NUP85	YJR042W	AVT3	P36062	692 aa		6.76	□□□□□ -1.33
NUP85	YJR042W	DIP2	Q12220	943 aa	Predicted RBP	6.49	□□□□□ -1.37
NUP85	YJR042W	DMA1	P38823	416 aa		6.48	□□□□□ -1.37
NUP85	YJR042W	PRY3	P47033	881 aa		6.4	□□□□□ -1.38
NUP85	YJR042W	LEO1	P38439	464 aa		6.3	□□□□□ -1.4
NUP85	YJR042W	AAD16	Q02895	342 aa		6.14	□□□□□ -1.43
NUP85	YJR042W	PRI1	P10363	409 aa		6.04	□□□□□ -1.44
NUP85	YJR042W	ABP1	P15891	592 aa	Known RBP	6.03	□□□□□ -1.44
NUP85	YJR042W	HAA1	Q12753	694 aa	Known RBP	5.98	□□□□□ -1.45
NUP85	YJR042W	LEU3	P08638	886 aa		5.97	□□□□□ -1.45
NUP85	YJR042W	PTP3	P40048	928 aa		5.92	□□□□□ -1.46
NUP85	YJR042W	SAS10	Q12136	610 aa	Predicted RBP	5.91	□□□□□ -1.46
NUP85	YJR042W	ISW2	Q08773	1120 aa		5.91	□□□□□ -1.46
NUP85	YJR042W	DMA2	P53924	522 aa		5.87	□□□□□ -1.47
NUP85	YJR042W	IFH1	P39520	1085 aa		5.87	□□□□□ -1.47
NUP85	YJR042W	RSE1	Q04693	1361 aa	Known RBP	5.81	□□□□□ -1.48
NUP85	YJR042W	RPG1	P38249	964 aa	Known RBP	5.8	□□□□□ -1.48
NUP85	YJR042W	YCK3	P39962	524 aa		5.8	□□□□□ -1.48
NUP85	YJR042W	IOC4	Q04213	475 aa		5.76	□□□□□ -1.49
NUP85	YJR042W	ORC1	P54784	914 aa	Predicted RBP	5.74	□□□□□ -1.49
NUP85	YJR042W	TSR3	Q12094	313 aa	Known RBP	5.73	□□□□□ -1.49
NUP85	YJR042W	SSP1	P38871	571 aa		5.7	□□□□□ -1.5
NUP85	YJR042W	NAP1	P25293	417 aa	Known RBP	5.69	□□□□□ -1.5
NUP85	YJR042W	RLF2	Q12495	606 aa		5.68	□□□□□ -1.5
NUP85	YJR042W	RIM101	P33400	625 aa		5.66	□□□□□ -1.5
NUP85	YJR042W	RPN1	P38764	993 aa	Known RBP	5.65	□□□□□ -1.5
NUP85	YJR042W	SPT21	P35209	758 aa		5.61	□□□□□ -1.51
NUP85	YJR042W	MRPL32	P25348	183 aa		5.59	□□□□□ -1.51
NUP85	YJR042W	RPL17A	P05740	184 aa	Known RBP	5.58	□□□□□ -1.52
NUP85	YJR042W	RPL17B	P46990	184 aa	Known RBP	5.58	□□□□□ -1.52
NUP85	YJR042W	OXP1	P28273	1286 aa		5.57	□□□□□ -1.52
NUP85	YJR042W	CKB1	P43639	278 aa		5.54	□□□□□ -1.52
NUP85	YJR042W	YLR271W	Q06152	274 aa		5.54	□□□□□ -1.52
NUP85	YJR042W	NOP8	Q08287	484 aa	Predicted RBP	5.52	□□□□□ -1.53
NUP85	YJR042W	YML020W	Q03722	664 aa		5.5	□□□□□ -1.53
NUP85	YJR042W	SGS1	P35187	1447 aa		5.48	□□□□□ -1.53
NUP85	YJR042W	AIM44	Q99299	758 aa		5.47	□□□□□ -1.53
NUP85	YJR042W	URN1	Q06525	465 aa	Known RBP	5.46	□□□□□ -1.54
NUP85	YJR042W	YGL015C	P33199	130 aa		5.45	□□□□□ -1.54
NUP85	YJR042W	YAH1	Q12184	172 aa	Known RBP	5.44	□□□□□ -1.54
NUP85	YJR042W	CST9	Q06032	482 aa		5.43	□□□□□ -1.54
NUP85	YJR042W	MGA2	P40578	1113 aa		5.41	□□□□□ -1.54
NUP85	YJR042W	SPA2	P23201	1466 aa	Known RBP	5.4	□□□□□ -1.54
NUP85	YJR042W	YPR148C	Q06523	435 aa		5.4	□□□□□ -1.54
NUP85	YJR042W	INO80	P53115	1489 aa		5.39	□□□□□ -1.55
NUP85	YJR042W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.39	□□□□□ -1.55	not detected
NUP85	YJR042W	KIN1	P13185	1064 aa		5.37	□□□□□ -1.55
NUP85	YJR042W	REB1	P21538	810 aa		5.36	□□□□□ -1.55
NUP85	YJR042W	SPB4	P25808	606 aa	Predicted RBP	5.36	□□□□□ -1.55
NUP85	YJR042W	MAM3	Q12296	706 aa		5.35	□□□□□ -1.55
NUP85	YJR042W	DSF2	P38213	736 aa		5.34	□□□□□ -1.55
NUP85	YJR042W	SLX8	P40072	274 aa		5.34	□□□□□ -1.55
NUP85	YJR042W	RAM2	P29703	316 aa		5.33	□□□□□ -1.56
NUP85	YJR042W	MRX12	P47084	519 aa		5.33	□□□□□ -1.56
NUP85	YJR042W	VPS70	P47161	811 aa		5.32	□□□□□ -1.56
NUP85	YJR042W	GUA1	P38625	525 aa	Known RBP	5.31	□□□□□ -1.56
NUP85	YJR042W	SSN2	P38931	1420 aa		5.31	□□□□□ -1.56
NUP85	YJR042W	SET1	P38827	1080 aa	Known RBP	5.31	□□□□□ -1.56
NUP85	YJR042W	SUB2	Q07478	446 aa	Known RBP	5.3	□□□□□ -1.56
NUP85	YJR042W	ATG36	P46983	293 aa		5.29	□□□□□ -1.56
NUP85	YJR042W	PSD2	P53037	1138 aa	Known RBP	5.29	□□□□□ -1.56
NUP85	YJR042W	GEF1	P37020	779 aa		5.29	□□□□□ -1.56
NUP85	YJR042W	YNR021W	P53723	404 aa	Known RBP	5.29	□□□□□ -1.56
NUP85	YJR042W	GLC3	P32775	704 aa		5.28	□□□□□ -1.56
NUP85	YJR042W	PAM1	P37304	830 aa	Known RBP	5.27	□□□□□ -1.57
NUP85	YJR042W	SSA1	P10591	642 aa	Known RBP	5.26	□□□□□ -1.57
NUP85	YJR042W	TCB3	Q03640	1545 aa	Known RBP	5.25	□□□□□ -1.57
NUP85	YJR042W	TOP1	P04786	769 aa		5.24	□□□□□ -1.57
NUP85	YJR042W	RSM7	P47150	247 aa		5.24	□□□□□ -1.57
NUP85	YJR042W	AIM7	Q12156	149 aa		5.24	□□□□□ -1.57
NUP85	YJR042W	PBS2	P08018	668 aa		5.23	□□□□□ -1.57
NUP85	YJR042W	NUP42	P49686	430 aa	Known RBP	5.23	□□□□□ -1.57
NUP85	YJR042W	SNU71	P53207	620 aa	Known RBP	5.23	□□□□□ -1.57
NUP85	YJR042W	YKR023W	P36119	530 aa	Known RBP	5.23	□□□□□ -1.57
NUP85	YJR042W	LAM6	Q08001	693 aa		5.23	□□□□□ -1.57
NUP85	YJR042W	DIT2	P21595	489 aa		5.22	□□□□□ -1.57
NUP85	YJR042W	YIL055C	P40523	627 aa	Known RBP	5.22	□□□□□ -1.57
NUP85	YJR042W	RCR1	P38212	213 aa		5.21	□□□□□ -1.57
NUP85	YJR042W	GLN1	P32288	370 aa	Known RBP	5.2	□□□□□ -1.58
NUP85	YJR042W	PKC1	P24583	1151 aa		5.19	□□□□□ -1.58
NUP85	YJR042W	SEN54	Q02825	467 aa	Predicted RBP	5.19	□□□□□ -1.58
NUP85	YJR042W	TFB3	Q03290	321 aa		5.19	□□□□□ -1.58
NUP85	YJR042W	TY1B-DR4	Q07793	1604 aa		5.19	□□□□□ -1.58
NUP85	YJR042W	SWE1	P32944	819 aa		5.19	□□□□□ -1.58
NUP85	YJR042W	FAR11	P53917	953 aa		5.18	□□□□□ -1.58
NUP85	YJR042W	HPC2	Q01448	625 aa		5.17	□□□□□ -1.58
NUP85	YJR042W	SPC42	P36094	363 aa		5.17	□□□□□ -1.58
NUP85	YJR042W	OCA5	P38738	679 aa		5.16	□□□□□ -1.58
NUP85	YJR042W	NOP7	P53261	605 aa	Known RBP	5.16	□□□□□ -1.58
NUP85	YJR042W	YTA7	P40340	1379 aa		5.15	□□□□□ -1.58
NUP85	YJR042W	RRN6	P32786	894 aa		5.15	□□□□□ -1.58
NUP85	YJR042W	IES2	P40154	320 aa		5.15	□□□□□ -1.58
NUP85	YJR042W	BRL1	P38770	471 aa		5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms