Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.42■■□□□ 1.82
AP4E1Q9UPM8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
AP4E1Q9UPM8 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
AP4E1Q9UPM8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
AP4E1Q9UPM8 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.41■■□□□ 1.82
AP4E1Q9UPM8 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
AP4E1Q9UPM8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
AP4E1Q9UPM8 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
AP4E1Q9UPM8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
AP4E1Q9UPM8 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
AP4E1Q9UPM8 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
AP4E1Q9UPM8 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
AP4E1Q9UPM8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
AP4E1Q9UPM8 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
AP4E1Q9UPM8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
AP4E1Q9UPM8 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
AP4E1Q9UPM8 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
AP4E1Q9UPM8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
AP4E1Q9UPM8 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
AP4E1Q9UPM8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.37■■□□□ 1.81
AP4E1Q9UPM8 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
AP4E1Q9UPM8 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
AP4E1Q9UPM8 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
AP4E1Q9UPM8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.36■■□□□ 1.81
AP4E1Q9UPM8 LINC01971-201ENST00000617888 1048 ntBASIC26.36■■□□□ 1.81
AP4E1Q9UPM8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
AP4E1Q9UPM8 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.35■■□□□ 1.81
AP4E1Q9UPM8 ZNRF2P2-203ENST00000454624 420 ntBASIC26.35■■□□□ 1.81
AP4E1Q9UPM8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.35■■□□□ 1.81
AP4E1Q9UPM8 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
AP4E1Q9UPM8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
AP4E1Q9UPM8 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.34■■□□□ 1.81
AP4E1Q9UPM8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
AP4E1Q9UPM8 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
AP4E1Q9UPM8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.33■■□□□ 1.81
AP4E1Q9UPM8 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.33■■□□□ 1.81
AP4E1Q9UPM8 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.32■■□□□ 1.8
AP4E1Q9UPM8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
AP4E1Q9UPM8 AC110285.7-201ENST00000624417 1536 ntBASIC26.32■■□□□ 1.8
AP4E1Q9UPM8 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
AP4E1Q9UPM8 ABHD17AP4-201ENST00000411545 909 ntBASIC26.31■■□□□ 1.8
AP4E1Q9UPM8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.31■■□□□ 1.8
AP4E1Q9UPM8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
AP4E1Q9UPM8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
AP4E1Q9UPM8 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
AP4E1Q9UPM8 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
AP4E1Q9UPM8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
AP4E1Q9UPM8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
AP4E1Q9UPM8 BX255925.1-201ENST00000566954 1854 ntBASIC26.29■■□□□ 1.8
AP4E1Q9UPM8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 LINC01003-201ENST00000564834 1764 ntBASIC26.28■■□□□ 1.8
AP4E1Q9UPM8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
AP4E1Q9UPM8 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.27■■□□□ 1.8
AP4E1Q9UPM8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
AP4E1Q9UPM8 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.26■■□□□ 1.79
AP4E1Q9UPM8 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
AP4E1Q9UPM8 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 DUX4L11-201ENST00000611504 1267 ntBASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 DUX4L12-201ENST00000614593 1267 ntBASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 DUX4L14-201ENST00000621227 1267 ntBASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
AP4E1Q9UPM8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
AP4E1Q9UPM8 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
AP4E1Q9UPM8 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.24■■□□□ 1.79
AP4E1Q9UPM8 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
AP4E1Q9UPM8 AC018358.1-201ENST00000631079 1402 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L13-201ENST00000554103 1267 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L15-201ENST00000611059 1267 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L23-201ENST00000615195 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L24-201ENST00000617576 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L22-201ENST00000618238 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L20-201ENST00000619712 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L21-201ENST00000622058 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L10-201ENST00000622460 1267 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 DUX4L25-201ENST00000624915 1269 ntBASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
AP4E1Q9UPM8 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
AP4E1Q9UPM8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
AP4E1Q9UPM8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
AP4E1Q9UPM8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
AP4E1Q9UPM8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
AP4E1Q9UPM8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
AP4E1Q9UPM8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
AP4E1Q9UPM8 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
AP4E1Q9UPM8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
AP4E1Q9UPM8 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
AP4E1Q9UPM8 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.19■■□□□ 1.78
AP4E1Q9UPM8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
AP4E1Q9UPM8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
AP4E1Q9UPM8 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
AP4E1Q9UPM8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms