Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 AC136428.2-201ENST00000563187 214 ntBASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP1AQ9HD42 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP1AQ9HD42 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CHMP1AQ9HD42 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP1AQ9HD42 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 BX255925.1-201ENST00000566954 1854 ntBASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CHMP1AQ9HD42 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP1AQ9HD42 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CHMP1AQ9HD42 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.52■■□□□ 1.04
CHMP1AQ9HD42 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CHMP1AQ9HD42 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.52■■□□□ 1.04
CHMP1AQ9HD42 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP1AQ9HD42 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CHMP1AQ9HD42 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CHMP1AQ9HD42 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP1AQ9HD42 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP1AQ9HD42 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP1AQ9HD42 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.5■■□□□ 1.03
CHMP1AQ9HD42 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CHMP1AQ9HD42 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP1AQ9HD42 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.49■■□□□ 1.03
CHMP1AQ9HD42 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.49■■□□□ 1.03
CHMP1AQ9HD42 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
CHMP1AQ9HD42 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CHMP1AQ9HD42 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CHMP1AQ9HD42 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CHMP1AQ9HD42 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CHMP1AQ9HD42 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CHMP1AQ9HD42 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CHMP1AQ9HD42 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CHMP1AQ9HD42 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.47■■□□□ 1.03
CHMP1AQ9HD42 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 MIR762-201ENST00000390236 83 ntBASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CHMP1AQ9HD42 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.45■■□□□ 1.02
CHMP1AQ9HD42 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CHMP1AQ9HD42 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CHMP1AQ9HD42 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 AC100797.4-201ENST00000631653 1827 ntBASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CHMP1AQ9HD42 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CHMP1AQ9HD42 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHMP1AQ9HD42 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CHMP1AQ9HD42 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.43■■□□□ 1.02
CHMP1AQ9HD42 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CHMP1AQ9HD42 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CHMP1AQ9HD42 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP1AQ9HD42 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP1AQ9HD42 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP1AQ9HD42 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CHMP1AQ9HD42 LINC01003-201ENST00000564834 1764 ntBASIC21.4■■□□□ 1.02
CHMP1AQ9HD42 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP1AQ9HD42 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CHMP1AQ9HD42 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.39■■□□□ 1.01
CHMP1AQ9HD42 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CHMP1AQ9HD42 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CHMP1AQ9HD42 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CHMP1AQ9HD42 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP1AQ9HD42 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CHMP1AQ9HD42 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP1AQ9HD42 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP1AQ9HD42 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CHMP1AQ9HD42 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP1AQ9HD42 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP1AQ9HD42 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms