Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CCDC65Q8IXS2 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.24■■■□□ 2.11
CCDC65Q8IXS2 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC65Q8IXS2 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC65Q8IXS2 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
CCDC65Q8IXS2 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.22■■■□□ 2.11
CCDC65Q8IXS2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC65Q8IXS2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC65Q8IXS2 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC65Q8IXS2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC65Q8IXS2 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC65Q8IXS2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC65Q8IXS2 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
CCDC65Q8IXS2 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC65Q8IXS2 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC28.19■■■□□ 2.1
CCDC65Q8IXS2 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC65Q8IXS2 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC65Q8IXS2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC65Q8IXS2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC65Q8IXS2 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC65Q8IXS2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.15■■■□□ 2.1
CCDC65Q8IXS2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
CCDC65Q8IXS2 LINC01971-201ENST00000617888 1048 ntBASIC28.14■■■□□ 2.1
CCDC65Q8IXS2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.14■■■□□ 2.09
CCDC65Q8IXS2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC65Q8IXS2 BX255925.1-201ENST00000566954 1854 ntBASIC28.12■■■□□ 2.09
CCDC65Q8IXS2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.12■■■□□ 2.09
CCDC65Q8IXS2 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.11■■■□□ 2.09
CCDC65Q8IXS2 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.11■■■□□ 2.09
CCDC65Q8IXS2 AC110285.7-201ENST00000624417 1536 ntBASIC28.11■■■□□ 2.09
CCDC65Q8IXS2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.1■■■□□ 2.09
CCDC65Q8IXS2 LINC01003-201ENST00000564834 1764 ntBASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 ZNRF2P2-203ENST00000454624 420 ntBASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC65Q8IXS2 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC65Q8IXS2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC65Q8IXS2 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC65Q8IXS2 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
CCDC65Q8IXS2 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
CCDC65Q8IXS2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
CCDC65Q8IXS2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC65Q8IXS2 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.07■■■□□ 2.08
CCDC65Q8IXS2 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 AC018358.1-201ENST00000631079 1402 ntBASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CCDC65Q8IXS2 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
CCDC65Q8IXS2 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.05■■■□□ 2.08
CCDC65Q8IXS2 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CCDC65Q8IXS2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 ABHD17AP4-201ENST00000411545 909 ntBASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
CCDC65Q8IXS2 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.03■■■□□ 2.08
CCDC65Q8IXS2 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CCDC65Q8IXS2 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC65Q8IXS2 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
CCDC65Q8IXS2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC65Q8IXS2 DUX4L11-201ENST00000611504 1267 ntBASIC28.01■■■□□ 2.07
CCDC65Q8IXS2 DUX4L12-201ENST00000614593 1267 ntBASIC28.01■■■□□ 2.07
CCDC65Q8IXS2 DUX4L14-201ENST00000621227 1267 ntBASIC28.01■■■□□ 2.07
CCDC65Q8IXS2 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC65Q8IXS2 DUX4L13-201ENST00000554103 1267 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L15-201ENST00000611059 1267 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L23-201ENST00000615195 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L24-201ENST00000617576 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L22-201ENST00000618238 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L20-201ENST00000619712 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L21-201ENST00000622058 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L10-201ENST00000622460 1267 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 DUX4L25-201ENST00000624915 1269 ntBASIC28■■■□□ 2.07
CCDC65Q8IXS2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
CCDC65Q8IXS2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
CCDC65Q8IXS2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC65Q8IXS2 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.99■■■□□ 2.07
CCDC65Q8IXS2 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.99■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms