Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC010864.1-201ENST00000609407 1511 ntBASIC21.21■□□□□ 0.99
CSPG4Q6UVK1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CSPG4Q6UVK1 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CSPG4Q6UVK1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CSPG4Q6UVK1 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CSPG4Q6UVK1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CSPG4Q6UVK1 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.19■□□□□ 0.98
CSPG4Q6UVK1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 MIR219A2-201ENST00000608502 1504 ntBASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CSPG4Q6UVK1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CSPG4Q6UVK1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.17■□□□□ 0.98
CSPG4Q6UVK1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.17■□□□□ 0.98
CSPG4Q6UVK1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CSPG4Q6UVK1 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSPG4Q6UVK1 AC129492.7-201ENST00000622992 756 ntBASIC21.16■□□□□ 0.98
CSPG4Q6UVK1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSPG4Q6UVK1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSPG4Q6UVK1 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSPG4Q6UVK1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSPG4Q6UVK1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.15■□□□□ 0.98
CSPG4Q6UVK1 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSPG4Q6UVK1 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSPG4Q6UVK1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSPG4Q6UVK1 AC127502.1-201ENST00000399971 1502 ntBASIC21.14■□□□□ 0.97
CSPG4Q6UVK1 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.13■□□□□ 0.97
CSPG4Q6UVK1 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.13■□□□□ 0.97
CSPG4Q6UVK1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSPG4Q6UVK1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSPG4Q6UVK1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSPG4Q6UVK1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSPG4Q6UVK1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSPG4Q6UVK1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSPG4Q6UVK1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CSPG4Q6UVK1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CSPG4Q6UVK1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSPG4Q6UVK1 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSPG4Q6UVK1 AC110285.7-201ENST00000624417 1536 ntBASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.1■□□□□ 0.97
CSPG4Q6UVK1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CSPG4Q6UVK1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSPG4Q6UVK1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CSPG4Q6UVK1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSPG4Q6UVK1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CSPG4Q6UVK1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.08■□□□□ 0.97
CSPG4Q6UVK1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CSPG4Q6UVK1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CSPG4Q6UVK1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.08■□□□□ 0.97
CSPG4Q6UVK1 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
CSPG4Q6UVK1 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CSPG4Q6UVK1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.07■□□□□ 0.96
CSPG4Q6UVK1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CSPG4Q6UVK1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 ECEL1P2-201ENST00000461596 1295 ntBASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 AC131212.1-201ENST00000613771 668 ntBASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.06■□□□□ 0.96
CSPG4Q6UVK1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSPG4Q6UVK1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.05■□□□□ 0.96
CSPG4Q6UVK1 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CSPG4Q6UVK1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.05■□□□□ 0.96
CSPG4Q6UVK1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.05■□□□□ 0.96
CSPG4Q6UVK1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 DUX4L18-201ENST00000553347 1267 ntBASIC21.04■□□□□ 0.96
CSPG4Q6UVK1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CSPG4Q6UVK1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CSPG4Q6UVK1 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.02■□□□□ 0.96
CSPG4Q6UVK1 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CSPG4Q6UVK1 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CSPG4Q6UVK1 AC133552.2-201ENST00000619106 1032 ntBASIC21.02■□□□□ 0.96
CSPG4Q6UVK1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 AC009299.2-201ENST00000482477 511 ntBASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 AL157400.5-201ENST00000507624 621 ntBASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CSPG4Q6UVK1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CSPG4Q6UVK1 REST-210ENST00000638187 1334 ntTSL 5 BASIC21■□□□□ 0.95
CSPG4Q6UVK1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CSPG4Q6UVK1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21■□□□□ 0.95
CSPG4Q6UVK1 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CSPG4Q6UVK1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CSPG4Q6UVK1 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms